Wall clock time and date at job start Mon Mar 30 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46820 * 2 1 4 4 N 1.46495 * 109.47209 * 119.99986 * 2 1 3 5 5 C 1.36044 * 126.35045 * 120.64702 * 4 2 1 6 6 C 1.50699 * 124.94730 * 359.96153 * 5 4 2 7 7 C 1.50702 * 109.46662 * 266.49568 * 6 5 4 8 8 H 1.07995 * 120.00175 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99480 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00374 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99445 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47520 * 60.00094 * 11 9 7 13 13 H 1.48500 * 109.46891 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47051 * 299.99436 * 11 9 7 15 15 N 1.30109 * 110.09835 * 180.02562 * 5 4 2 16 16 C 1.35785 * 109.64793 * 359.92376 * 15 5 4 17 17 C 1.39740 * 133.60556 * 180.02562 * 16 15 5 18 18 C 1.36604 * 119.88659 * 179.97438 * 17 16 15 19 19 C 1.38772 * 120.67101 * 0.02562 * 18 17 16 20 20 C 1.37864 * 120.45045 * 0.02562 * 19 18 17 21 21 C 1.38054 * 126.35168 * 300.59176 * 4 2 1 22 22 H 1.08994 * 109.47783 * 305.25953 * 1 2 3 23 23 H 1.09005 * 109.47261 * 65.26317 * 1 2 3 24 24 H 1.09001 * 109.47146 * 185.25932 * 1 2 3 25 25 H 1.08998 * 109.47194 * 240.00323 * 2 1 3 26 26 H 1.09004 * 109.47297 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47562 * 299.99649 * 3 2 1 28 28 H 1.08999 * 109.47431 * 60.00458 * 3 2 1 29 29 H 1.08998 * 109.47430 * 26.49788 * 6 5 4 30 30 H 1.09000 * 109.46674 * 146.49891 * 6 5 4 31 31 H 0.97001 * 119.99930 * 179.97438 * 10 9 7 32 32 H 1.07994 * 120.05477 * 0.26012 * 17 16 15 33 33 H 1.07992 * 119.66316 * 180.02562 * 18 17 16 34 34 H 1.08000 * 119.77835 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.15339 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8137 -1.7940 1.2219 6 6 3.3379 -2.5089 0.0033 7 6 2.4031 -3.6338 -0.3600 8 1 1.5178 -3.8127 0.2320 9 6 2.6783 -4.4344 -1.4483 10 7 3.7566 -4.2168 -2.1689 11 14 1.5191 -5.8282 -1.8990 12 1 0.1717 -5.2768 -2.1909 13 1 2.0364 -6.5336 -3.0991 14 1 1.4284 -6.7828 -0.7652 15 7 3.0546 -2.1428 2.4520 16 6 2.4311 -1.2852 3.3002 17 6 2.3537 -1.1924 4.6924 18 6 1.6278 -0.1887 5.2684 19 6 0.9629 0.7436 4.4847 20 6 1.0242 0.6711 3.1093 21 6 1.7576 -0.3417 2.5062 22 1 -0.3634 0.5932 0.8391 23 1 -0.3634 0.4300 -0.9334 24 1 -0.3633 -1.0233 0.0942 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.4039 -1.8081 -0.8289 30 1 4.3273 -2.9133 0.2170 31 1 3.9503 -4.7804 -2.9343 32 1 2.8708 -1.9102 5.3119 33 1 1.5708 -0.1202 6.3447 34 1 0.3928 1.5310 4.9553 35 1 0.5045 1.3990 2.5040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259426880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:10 Heat of formation + Delta-G solvation = 55.134509 kcal Electronic energy + Delta-G solvation = -17455.908990 eV Core-core repulsion = 14839.931412 eV Total energy + Delta-G solvation = -2615.977578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.41 seconds Orbital eigenvalues (eV) -41.59501 -37.09499 -35.52550 -33.31080 -31.09998 -30.25784 -29.26254 -27.39274 -27.16147 -23.78832 -22.69205 -21.41324 -20.70136 -19.25908 -16.73282 -16.53336 -16.33954 -15.05050 -14.82228 -14.45617 -14.35742 -13.92893 -13.28107 -13.03000 -12.56118 -12.38271 -12.28075 -12.14532 -11.95666 -11.43011 -11.39239 -11.13116 -10.99951 -10.82752 -10.76412 -10.54110 -10.01127 -9.80973 -9.52910 -9.13022 -8.55012 -7.74277 -7.48757 -6.17371 -4.21967 1.47596 1.98160 3.20126 3.26856 3.31189 3.34454 3.53418 4.32889 4.42672 4.82788 4.85454 5.14432 5.14503 5.19622 5.23757 5.36452 5.50223 5.59943 5.65944 5.79015 5.80655 5.93525 5.96345 6.14400 6.15139 6.28392 6.32058 6.56708 6.85838 6.90632 7.06560 7.19691 7.30669 7.48362 7.77299 7.84190 8.12014 8.77389 8.79936 9.42359 10.92479 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.007170 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.115071 B = 3904.421315 C = 4388.888017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.162 4.162 4 N -0.486 5.486 5 C 0.340 3.660 6 C 0.087 3.913 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.900 3.100 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.274 1.274 15 N -0.516 5.516 16 C 0.053 3.947 17 C -0.074 4.074 18 C -0.137 4.137 19 C -0.127 4.127 20 C -0.107 4.107 21 C 0.037 3.963 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 11.406 6.047 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.176 5.176 5 C 0.077 3.923 6 C 0.048 3.952 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.200 1.200 15 N -0.235 5.235 16 C -0.067 4.067 17 C -0.094 4.094 18 C -0.158 4.158 19 C -0.147 4.147 20 C -0.128 4.128 21 C -0.072 4.072 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.159 10.725 6.024 13.340 hybrid contribution -1.117 -0.119 -0.547 1.249 sum -6.276 10.607 5.478 13.487 Atomic orbital electron populations 1.22147 0.94082 1.03335 1.02267 1.21362 0.95054 0.93233 0.87422 1.22192 1.02105 0.95176 1.02555 1.45684 1.42243 1.25318 1.04353 1.25008 0.87718 0.83383 0.96234 1.18074 0.97953 0.94161 0.84973 1.20812 1.08381 1.13822 1.12318 0.92395 1.24933 0.95489 0.97506 0.95903 1.69921 1.25319 1.39464 1.18215 0.86511 0.80733 0.82035 0.77967 1.20175 1.21038 1.19952 1.70611 1.27037 1.26901 0.98953 1.19296 0.99099 0.94129 0.94142 1.19926 0.99664 0.98678 0.91136 1.20450 0.99972 0.96094 0.99261 1.20675 1.01548 0.99927 0.92535 1.19919 1.00898 0.97470 0.94473 1.18859 1.03421 0.99993 0.84939 0.92375 0.90960 0.91410 0.86710 0.91918 0.90854 0.92145 0.94265 0.92459 0.92458 0.86093 0.86297 0.86292 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.19 37.16 0.34 -1.91 16 2 C 0.13 2.12 3.50 -67.94 -0.24 1.89 16 3 C -0.16 -2.10 9.26 37.16 0.34 -1.76 16 4 N -0.49 -9.61 2.65 -104.12 -0.28 -9.89 16 5 C 0.34 7.96 7.04 -154.82 -1.09 6.87 16 6 C 0.09 2.21 5.17 -29.03 -0.15 2.05 16 7 C -0.51 -14.10 9.09 -34.44 -0.31 -14.42 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 11 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 N -0.52 -12.47 11.27 -8.23 -0.09 -12.56 16 16 C 0.05 1.11 7.23 -84.70 -0.61 0.50 16 17 C -0.07 -1.30 10.05 -39.61 -0.40 -1.69 16 18 C -0.14 -1.96 9.96 -39.97 -0.40 -2.36 16 19 C -0.13 -1.75 10.03 -39.52 -0.40 -2.14 16 20 C -0.11 -1.65 8.87 -39.50 -0.35 -2.00 16 21 C 0.04 0.71 6.22 -83.99 -0.52 0.19 16 22 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.11 2.00 6.55 -51.93 -0.34 1.66 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.75 6.40 -51.93 -0.33 0.41 16 29 H 0.04 0.97 6.88 -51.93 -0.36 0.62 16 30 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.11 1.49 6.00 -52.49 -0.32 1.17 16 LS Contribution 292.35 15.07 4.41 4.41 Total: -1.00 -30.45 292.35 -8.73 -39.18 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.60 Total: 0.30 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.88 Total: -13.12 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.37 Total: -46.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.45 -8.73 -39.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259426880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.315 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.41 seconds