Wall clock time and date at job start Mon Mar 30 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46820 * 2 1 4 4 N 1.46495 * 109.47209 * 119.99986 * 2 1 3 5 5 C 1.36044 * 126.35045 * 120.64702 * 4 2 1 6 6 C 1.50699 * 124.94730 * 359.96153 * 5 4 2 7 7 C 1.50702 * 109.46662 * 266.49568 * 6 5 4 8 8 H 1.07995 * 120.00175 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99480 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00374 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99445 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47520 * 60.00094 * 11 9 7 13 13 H 1.48500 * 109.46891 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47051 * 299.99436 * 11 9 7 15 15 N 1.30109 * 110.09835 * 180.02562 * 5 4 2 16 16 C 1.35785 * 109.64793 * 359.92376 * 15 5 4 17 17 C 1.39740 * 133.60556 * 180.02562 * 16 15 5 18 18 C 1.36604 * 119.88659 * 179.97438 * 17 16 15 19 19 C 1.38772 * 120.67101 * 0.02562 * 18 17 16 20 20 C 1.37864 * 120.45045 * 0.02562 * 19 18 17 21 21 C 1.38054 * 126.35168 * 300.59176 * 4 2 1 22 22 H 1.08994 * 109.47783 * 305.25953 * 1 2 3 23 23 H 1.09005 * 109.47261 * 65.26317 * 1 2 3 24 24 H 1.09001 * 109.47146 * 185.25932 * 1 2 3 25 25 H 1.08998 * 109.47194 * 240.00323 * 2 1 3 26 26 H 1.09004 * 109.47297 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47562 * 299.99649 * 3 2 1 28 28 H 1.08999 * 109.47431 * 60.00458 * 3 2 1 29 29 H 1.08998 * 109.47430 * 26.49788 * 6 5 4 30 30 H 1.09000 * 109.46674 * 146.49891 * 6 5 4 31 31 H 0.97001 * 119.99930 * 179.97438 * 10 9 7 32 32 H 1.07994 * 120.05477 * 0.26012 * 17 16 15 33 33 H 1.07992 * 119.66316 * 180.02562 * 18 17 16 34 34 H 1.08000 * 119.77835 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.15339 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8137 -1.7940 1.2219 6 6 3.3379 -2.5089 0.0033 7 6 2.4031 -3.6338 -0.3600 8 1 1.5178 -3.8127 0.2320 9 6 2.6783 -4.4344 -1.4483 10 7 3.7566 -4.2168 -2.1689 11 14 1.5191 -5.8282 -1.8990 12 1 0.1717 -5.2768 -2.1909 13 1 2.0364 -6.5336 -3.0991 14 1 1.4284 -6.7828 -0.7652 15 7 3.0546 -2.1428 2.4520 16 6 2.4311 -1.2852 3.3002 17 6 2.3537 -1.1924 4.6924 18 6 1.6278 -0.1887 5.2684 19 6 0.9629 0.7436 4.4847 20 6 1.0242 0.6711 3.1093 21 6 1.7576 -0.3417 2.5062 22 1 -0.3634 0.5932 0.8391 23 1 -0.3634 0.4300 -0.9334 24 1 -0.3633 -1.0233 0.0942 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.4039 -1.8081 -0.8289 30 1 4.3273 -2.9133 0.2170 31 1 3.9503 -4.7804 -2.9343 32 1 2.8708 -1.9102 5.3119 33 1 1.5708 -0.1202 6.3447 34 1 0.3928 1.5310 4.9553 35 1 0.5045 1.3990 2.5040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259426880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:10 Heat of formation + Delta-G solvation = 38.090992 kcal Electronic energy + Delta-G solvation = -17456.648053 eV Core-core repulsion = 14839.931412 eV Total energy + Delta-G solvation = -2616.716641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.06811 -38.38719 -36.86485 -35.37616 -32.43325 -32.05536 -30.60637 -29.02858 -28.23541 -25.74669 -23.98056 -22.81374 -22.13639 -20.72538 -18.65662 -18.13833 -17.67355 -16.73575 -16.35115 -15.94465 -15.62677 -15.17157 -14.55261 -14.45793 -14.23587 -14.10980 -13.81148 -13.35068 -13.19777 -12.89243 -12.86271 -12.62182 -12.58633 -12.29573 -12.27739 -12.00561 -11.85533 -11.55002 -11.19254 -10.70226 -10.67743 -9.10430 -8.93955 -8.28095 -6.42179 0.13110 0.70585 1.36845 1.40275 1.48239 1.79511 1.96693 2.38042 3.02777 3.03814 3.46432 3.62960 3.73212 3.97649 4.06835 4.21646 4.28314 4.43358 4.58512 4.61503 4.67068 4.69501 4.75058 4.90135 4.93912 5.09638 5.14705 5.19814 5.20977 5.33380 5.60742 5.64866 5.68615 5.77678 5.95662 6.12695 6.39336 6.63135 7.17311 7.26148 8.80926 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.007170 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.115071 B = 3904.421315 C = 4388.888017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.480 5.480 5 C 0.306 3.694 6 C 0.102 3.898 7 C -0.530 4.530 8 H 0.043 0.957 9 C 0.019 3.981 10 N -0.920 5.920 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.273 1.273 14 H -0.276 1.276 15 N -0.554 5.554 16 C 0.001 3.999 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.111 4.111 21 C 0.028 3.972 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.037 0.963 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.022 0.978 31 H 0.271 0.729 32 H 0.124 0.876 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 13.709 7.290 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 C -0.209 4.209 4 N -0.170 5.170 5 C 0.041 3.959 6 C 0.064 3.936 7 C -0.569 4.569 8 H 0.062 0.938 9 C -0.181 4.181 10 N -0.558 5.558 11 Si 0.789 3.211 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.202 1.202 15 N -0.275 5.275 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.142 4.142 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.081 4.081 22 H 0.094 0.906 23 H 0.121 0.879 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.732 13.055 7.262 16.821 hybrid contribution -0.339 -0.730 -0.766 1.111 sum -8.071 12.325 6.496 16.101 Atomic orbital electron populations 1.22108 0.92076 1.02060 1.04675 1.21681 0.96649 0.94543 0.85311 1.22139 1.01091 0.92964 1.04713 1.45749 1.41165 1.24206 1.05860 1.24309 0.90605 0.85703 0.95331 1.17645 0.96025 0.93839 0.86126 1.20964 1.08360 1.14986 1.12613 0.93827 1.25752 0.97013 0.99767 0.95545 1.70019 1.26690 1.40504 1.18603 0.85505 0.79092 0.78734 0.77773 1.18935 1.19730 1.20193 1.70409 1.28334 1.28792 0.99981 1.19816 1.01033 0.95127 0.95728 1.20238 1.00975 1.00309 0.89802 1.20964 0.97568 0.94231 1.01471 1.21311 0.99670 0.99855 0.91719 1.20366 1.00270 0.96815 0.95728 1.19270 1.03968 1.00767 0.84065 0.90555 0.87930 0.94387 0.89281 0.93501 0.87681 0.90809 0.94771 0.95961 0.92027 0.85848 0.82200 0.81449 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.19 71.98 0.66 -3.36 16 2 C 0.12 3.86 3.50 44.99 0.16 4.02 16 3 C -0.15 -3.65 9.26 71.98 0.67 -2.99 16 4 N -0.48 -19.58 2.65 -483.31 -1.28 -20.86 16 5 C 0.31 15.31 7.04 137.92 0.97 16.28 16 6 C 0.10 5.63 5.17 29.10 0.15 5.78 16 7 C -0.53 -30.78 9.09 25.60 0.23 -30.55 16 8 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 9 C 0.02 1.08 5.46 84.66 0.46 1.55 16 10 N -0.92 -53.76 13.29 21.45 0.28 -53.47 16 11 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 N -0.55 -28.60 11.27 -179.96 -2.03 -30.62 16 16 C 0.00 0.06 7.23 39.45 0.29 0.34 16 17 C -0.09 -3.18 10.05 22.25 0.22 -2.96 16 18 C -0.12 -3.00 9.96 22.02 0.22 -2.78 16 19 C -0.11 -2.35 10.03 22.31 0.22 -2.13 16 20 C -0.11 -3.03 8.87 22.32 0.20 -2.83 16 21 C 0.03 1.07 6.22 38.86 0.24 1.31 16 22 H 0.08 1.72 6.43 -2.39 -0.02 1.71 16 23 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 3.28 6.55 -2.39 -0.02 3.27 16 26 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 1.58 6.40 -2.39 -0.02 1.56 16 29 H 0.03 1.85 6.88 -2.39 -0.02 1.83 16 30 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 3.01 6.00 -2.91 -0.02 3.00 16 Total: -1.00 -71.51 292.35 4.77 -66.74 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.08 Total: 10.35 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.69 Total: -18.31 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.03 Total: -104.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.51 4.77 -66.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259426880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.831 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds