Wall clock time and date at job start Mon Mar 30 2020 07:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00116 * 2 1 4 4 H 1.08999 * 109.47335 * 323.42749 * 3 2 1 5 5 C 1.53009 * 109.47291 * 203.42670 * 3 2 1 6 6 C 1.50696 * 109.46637 * 64.99910 * 5 3 2 7 7 H 1.07995 * 120.00845 * 0.02562 * 6 5 3 8 8 C 1.37880 * 119.99711 * 179.97438 * 6 5 3 9 9 N 1.31519 * 119.99800 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00044 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47285 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47191 * 120.00477 * 10 8 6 13 13 H 1.48500 * 109.47371 * 240.00096 * 10 8 6 14 14 C 1.50697 * 109.47067 * 83.42920 * 3 2 1 15 15 C 1.34232 * 126.50405 * 25.97644 * 14 3 2 16 16 N 1.36834 * 109.93135 * 179.87074 * 15 14 3 17 17 H 0.97006 * 125.06168 * 180.14901 * 16 15 14 18 18 C 1.37682 * 109.87548 * 0.40958 * 16 15 14 19 19 C 1.39127 * 133.51683 * 179.76243 * 18 16 15 20 20 C 1.37745 * 119.78472 * 179.97438 * 19 18 16 21 21 C 1.38841 * 120.66489 * 0.02562 * 20 19 18 22 22 C 1.36618 * 120.52620 * 359.97438 * 21 20 19 23 23 C 1.39632 * 119.76610 * 0.04738 * 22 21 20 24 24 H 1.08995 * 109.47167 * 304.75019 * 1 2 3 25 25 H 1.09001 * 109.46845 * 64.74896 * 1 2 3 26 26 H 1.09003 * 109.47219 * 184.74447 * 1 2 3 27 27 H 1.00896 * 111.00255 * 123.95727 * 2 1 3 28 28 H 1.08997 * 109.46943 * 185.00143 * 5 3 2 29 29 H 1.08995 * 109.46957 * 305.00406 * 5 3 2 30 30 H 0.97003 * 119.99725 * 179.97438 * 9 8 6 31 31 H 1.08002 * 125.03537 * 359.97438 * 15 14 3 32 32 H 1.08000 * 120.10339 * 359.97181 * 19 18 16 33 33 H 1.07997 * 119.67357 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.73479 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.11821 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3552 2.0064 -0.6123 5 6 3.4140 1.3732 -0.5735 6 6 3.3702 0.9629 -2.0229 7 1 2.4253 0.7251 -2.4886 8 6 4.5365 0.8922 -2.7548 9 7 5.6872 1.1823 -2.1879 10 14 4.4825 0.3829 -4.5512 11 1 3.0772 0.1112 -4.9466 12 1 5.0302 1.4772 -5.3927 13 1 5.2971 -0.8438 -4.7428 14 6 2.0237 1.8986 1.4115 15 6 2.1147 1.1692 2.5346 16 7 2.1146 1.9931 3.6271 17 1 2.1739 1.6965 4.5488 18 6 2.0120 3.3055 3.2237 19 6 1.9636 4.5167 3.9066 20 6 1.8570 5.6956 3.2022 21 6 1.7966 5.6887 1.8151 22 6 1.8425 4.5109 1.1244 23 6 1.9500 3.3040 1.8183 24 1 -0.3633 0.5857 0.8443 25 1 -0.3633 0.4384 -0.9295 26 1 -0.3634 -1.0242 0.0850 27 1 1.8306 -0.5261 0.7813 28 1 3.8376 2.3742 -0.4918 29 1 4.0323 0.6703 -0.0155 30 1 6.5078 1.1321 -2.7027 31 1 2.1800 0.0918 2.5706 32 1 2.0095 4.5324 4.9855 33 1 1.8192 6.6347 3.7341 34 1 1.7135 6.6219 1.2779 35 1 1.7954 4.5132 0.0454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259464695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:32 Heat of formation + Delta-G solvation = 33.805040 kcal Electronic energy + Delta-G solvation = -17138.289948 eV Core-core repulsion = 14521.387454 eV Total energy + Delta-G solvation = -2616.902493 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.19232 -38.25032 -37.32725 -34.78422 -32.87977 -31.31586 -30.22217 -29.49551 -26.81996 -24.97758 -23.72246 -23.03844 -22.51383 -20.06318 -18.98954 -18.19524 -17.26105 -16.58399 -16.32879 -15.85996 -15.58916 -15.40609 -14.83344 -14.59944 -14.54815 -14.30348 -13.59746 -13.48178 -13.18704 -12.73832 -12.58072 -12.53201 -12.50331 -12.41172 -11.98354 -11.75699 -11.54794 -11.08716 -10.48573 -10.38517 -9.12539 -9.10735 -8.50924 -8.06641 -6.13343 0.23750 0.73918 1.43179 1.43545 1.57398 1.76791 2.27272 2.49955 3.02218 3.24653 3.55480 3.87534 3.96988 4.16862 4.27372 4.44661 4.48135 4.60343 4.69025 4.71191 4.79542 4.94979 4.99653 5.08078 5.15292 5.25048 5.54485 5.57908 5.66100 5.73001 5.79432 5.85849 5.93100 6.24554 6.35665 6.47863 6.74643 6.78185 7.00973 7.52295 9.04931 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.006468 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.951856 B = 4327.671335 C = 4852.109719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.681 5.681 3 C 0.182 3.818 4 H 0.051 0.949 5 C 0.055 3.945 6 C -0.500 4.500 7 H 0.057 0.943 8 C -0.007 4.007 9 N -0.941 5.941 10 Si 0.961 3.039 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.281 1.281 14 C -0.211 4.211 15 C 0.050 3.950 16 N -0.581 5.581 17 H 0.431 0.569 18 C 0.081 3.919 19 C -0.133 4.133 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.096 4.096 23 C -0.132 4.132 24 H 0.019 0.981 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.338 0.662 28 H -0.019 1.019 29 H -0.011 1.011 30 H 0.258 0.742 31 H 0.189 0.811 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 3.969 14.054 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.311 5.311 3 C 0.071 3.929 4 H 0.069 0.931 5 C 0.017 3.983 6 C -0.538 4.538 7 H 0.076 0.924 8 C -0.203 4.203 9 N -0.583 5.583 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.206 1.206 14 C -0.220 4.220 15 C -0.077 4.077 16 N -0.186 5.186 17 H 0.271 0.729 18 C -0.026 4.026 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.171 4.171 22 C -0.115 4.115 23 C -0.138 4.138 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.157 0.843 28 H -0.001 1.001 29 H 0.008 0.992 30 H 0.067 0.933 31 H 0.206 0.794 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.158 0.842 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.007 3.797 13.445 17.185 hybrid contribution 0.357 -0.152 0.058 0.392 sum -9.650 3.645 13.503 16.992 Atomic orbital electron populations 1.22158 0.87487 1.01847 0.99796 1.60433 1.07797 1.13202 1.49669 1.19703 0.96449 0.87932 0.88792 0.93053 1.18836 0.90960 0.93738 0.94735 1.21517 0.92916 1.42977 0.96420 0.92446 1.25908 0.95287 0.96180 1.02916 1.70132 0.98463 1.51694 1.38035 0.85459 0.78299 0.77671 0.79937 1.18845 1.20828 1.20649 1.21468 1.11600 0.92394 0.96528 1.21677 1.03968 0.96921 0.85101 1.41542 1.64746 1.03409 1.08911 0.72908 1.18562 1.04384 0.86512 0.93189 1.20387 1.05664 0.88800 1.00493 1.21192 0.99028 0.98261 0.93591 1.20908 1.03528 0.97407 0.95235 1.20492 0.99611 0.91942 0.99451 1.19441 1.07170 0.93610 0.93548 0.96224 0.93191 0.89946 0.84290 1.00054 0.99228 0.93294 0.79378 0.83245 0.82402 0.84216 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.49 127.69 1.34 2.46 16 2 N -0.68 -25.98 6.26 -518.53 -3.24 -29.23 16 3 C 0.18 7.99 2.44 44.17 0.11 8.10 16 4 H 0.05 2.40 7.88 -2.39 -0.02 2.38 16 5 C 0.05 3.05 4.64 29.85 0.14 3.18 16 6 C -0.50 -29.60 8.84 25.60 0.23 -29.37 16 7 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 8 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 9 N -0.94 -59.68 13.29 21.45 0.28 -59.40 16 10 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 11 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 C -0.21 -8.06 5.05 -18.63 -0.09 -8.15 16 15 C 0.05 1.49 11.02 83.00 0.91 2.41 16 16 N -0.58 -14.69 6.07 -187.61 -1.14 -15.83 16 17 H 0.43 7.15 8.96 -92.70 -0.83 6.32 16 18 C 0.08 2.44 7.28 39.03 0.28 2.72 16 19 C -0.13 -3.18 10.08 22.37 0.23 -2.96 16 20 C -0.10 -2.35 10.01 22.30 0.22 -2.13 16 21 C -0.15 -4.23 9.97 22.04 0.22 -4.01 16 22 C -0.10 -3.44 10.05 22.23 0.22 -3.22 16 23 C -0.13 -4.93 6.35 -20.20 -0.13 -5.06 16 24 H 0.02 0.57 7.86 -2.39 -0.02 0.55 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.34 11.37 6.89 -89.70 -0.62 10.75 16 28 H -0.02 -1.17 8.14 -2.39 -0.02 -1.18 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.19 4.49 6.88 -2.91 -0.02 4.47 16 32 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 34 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.10 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -74.22 297.47 1.72 -72.50 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.35 Total: 19.30 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.14 Total: -35.98 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.10 Total: -104.46 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -74.22 1.72 -72.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259464695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.303 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds