Wall clock time and date at job start Mon Mar 30 2020 07:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 111.00094 * 2 1 4 4 H 1.09002 * 109.46706 * 37.89208 * 3 2 1 5 5 C 1.52995 * 109.47162 * 157.89106 * 3 2 1 6 6 C 1.50706 * 109.47265 * 295.00033 * 5 3 2 7 7 H 1.08000 * 119.99673 * 359.97438 * 6 5 3 8 8 C 1.37877 * 119.99847 * 179.97438 * 6 5 3 9 9 N 1.31511 * 120.00252 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99552 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47291 * 90.00278 * 10 8 6 12 12 H 1.48501 * 109.46887 * 210.00301 * 10 8 6 13 13 H 1.48501 * 109.47214 * 329.99970 * 10 8 6 14 14 C 1.50699 * 109.47177 * 277.89042 * 3 2 1 15 15 C 1.34244 * 126.50228 * 333.77814 * 14 3 2 16 16 N 1.36831 * 109.92949 * 180.18650 * 15 14 3 17 17 H 0.97001 * 125.05898 * 179.81430 * 16 15 14 18 18 C 1.37685 * 109.87242 * 359.54957 * 16 15 14 19 19 C 1.39127 * 133.50830 * 180.26461 * 18 16 15 20 20 C 1.37746 * 119.77996 * 179.97438 * 19 18 16 21 21 C 1.38828 * 120.66891 * 0.02562 * 20 19 18 22 22 C 1.36629 * 120.52558 * 359.97438 * 21 20 19 23 23 C 1.39634 * 119.76504 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46847 * 64.95723 * 1 2 3 25 25 H 1.08992 * 109.46811 * 184.95866 * 1 2 3 26 26 H 1.09000 * 109.47169 * 304.95882 * 1 2 3 27 27 H 1.00902 * 111.00090 * 236.04326 * 2 1 3 28 28 H 1.09002 * 109.47212 * 54.99915 * 5 3 2 29 29 H 1.08999 * 109.47382 * 174.99939 * 5 3 2 30 30 H 0.97000 * 119.99869 * 180.02562 * 9 8 6 31 31 H 1.08004 * 125.03100 * 0.02562 * 15 14 3 32 32 H 1.08004 * 120.10525 * 359.97438 * 19 18 16 33 33 H 1.07998 * 119.66444 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.73950 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.11639 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3685 2.0013 0.6312 5 6 3.4259 1.3686 0.5429 6 6 3.4134 0.9464 1.9895 7 1 2.4785 0.7047 2.4734 8 6 4.5953 0.8687 2.6953 9 7 5.7335 1.1635 2.1062 10 14 4.5796 0.3460 4.4886 11 1 4.7195 -1.1298 4.5753 12 1 5.7094 0.9932 5.2027 13 1 3.2974 0.7593 5.1134 14 6 1.9935 1.9103 -1.4073 15 6 2.0648 1.1905 -2.5382 16 7 2.0410 2.0233 -3.6236 17 1 2.0838 1.7345 -4.5486 18 6 1.9413 3.3319 -3.2072 19 6 1.8750 4.5484 -3.8791 20 6 1.7766 5.7210 -3.1630 21 6 1.7432 5.7026 -1.7753 22 6 1.8070 4.5193 -1.0952 23 6 1.9071 3.3186 -1.8011 24 1 -0.3633 0.4350 -0.9310 25 1 -0.3632 -1.0238 0.0888 26 1 -0.3633 0.5888 0.8422 27 1 1.8306 -0.5262 -0.7813 28 1 4.0322 0.6704 -0.0341 29 1 3.8479 2.3703 0.4604 30 1 6.5650 1.1085 2.6026 31 1 2.1337 0.1136 -2.5843 32 1 1.9007 4.5732 -4.9586 33 1 1.7248 6.6642 -3.6865 34 1 1.6654 6.6309 -1.2289 35 1 1.7810 4.5126 -0.0156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259464698.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:36 Heat of formation + Delta-G solvation = 55.505839 kcal Electronic energy + Delta-G solvation = -17138.178694 eV Core-core repulsion = 14522.217218 eV Total energy + Delta-G solvation = -2615.961476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.99521 -36.93599 -35.94430 -32.63205 -31.61808 -29.68802 -28.98792 -28.05288 -25.05153 -23.36820 -22.56880 -21.45782 -21.13305 -18.64875 -17.72624 -16.22311 -15.94811 -15.20923 -14.66239 -14.28274 -14.14647 -14.08791 -13.65199 -13.39609 -13.08095 -12.46135 -12.19495 -11.86422 -11.54532 -11.42692 -11.30362 -10.88844 -10.75656 -10.58183 -10.49751 -10.11553 -9.67603 -9.02429 -8.91934 -8.19495 -7.94552 -7.64974 -7.25578 -5.81277 -3.79298 1.40091 1.89633 3.04132 3.37202 3.44288 3.49749 3.53916 4.20278 4.62435 4.96264 4.99789 5.12957 5.24428 5.37995 5.55520 5.60405 5.72998 5.82345 5.91398 5.96573 6.07757 6.22384 6.25628 6.33245 6.49620 6.70245 6.87797 6.93348 7.00941 7.19068 7.42593 7.62863 7.77181 7.78552 8.08350 8.11506 8.22914 8.65293 9.26282 9.81604 11.30512 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.006465 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.019940 B = 4329.855966 C = 4852.612726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.664 5.664 3 C 0.161 3.839 4 H 0.073 0.927 5 C 0.043 3.957 6 C -0.489 4.489 7 H 0.059 0.941 8 C 0.050 3.950 9 N -0.903 5.903 10 Si 0.890 3.110 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.276 1.276 14 C -0.164 4.164 15 C 0.027 3.973 16 N -0.599 5.599 17 H 0.410 0.590 18 C 0.095 3.905 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.057 4.057 23 C -0.097 4.097 24 H 0.010 0.990 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.329 0.671 28 H 0.016 0.984 29 H 0.019 0.981 30 H 0.256 0.744 31 H 0.163 0.837 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 4.106 -12.174 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.293 5.293 3 C 0.050 3.950 4 H 0.091 0.909 5 C 0.005 3.995 6 C -0.527 4.527 7 H 0.077 0.923 8 C -0.149 4.149 9 N -0.544 5.544 10 Si 0.719 3.281 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.201 1.201 14 C -0.173 4.173 15 C -0.098 4.098 16 N -0.202 5.202 17 H 0.246 0.754 18 C -0.013 4.013 19 C -0.161 4.161 20 C -0.121 4.121 21 C -0.176 4.176 22 C -0.076 4.076 23 C -0.103 4.103 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.180 0.820 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.194 3.941 -11.529 15.264 hybrid contribution 0.045 -0.231 -0.503 0.555 sum -9.149 3.709 -12.032 15.564 Atomic orbital electron populations 1.22178 0.89705 1.00717 0.99387 1.60582 1.05655 1.14284 1.48761 1.20384 1.00428 0.86735 0.87416 0.90919 1.19068 0.87711 0.97032 0.95685 1.21163 0.92829 1.43236 0.95514 0.92260 1.24999 0.95775 0.96169 0.97964 1.69977 0.97673 1.50360 1.36394 0.86630 0.77262 0.78557 0.85686 1.20943 1.21667 1.20057 1.21739 1.07201 0.91218 0.97100 1.21384 1.07064 0.95750 0.85568 1.41600 1.66136 1.04267 1.08173 0.75398 1.18288 1.03864 0.85171 0.93940 1.19912 1.07714 0.89772 0.98666 1.20715 1.00574 0.96697 0.94163 1.20573 1.05294 0.97644 0.94116 1.20417 0.96586 0.90603 0.99985 1.19145 1.05846 0.93588 0.91722 0.97185 0.92542 0.92123 0.85374 0.96608 0.96235 0.93392 0.81969 0.86870 0.86286 0.86334 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.52 60.07 0.63 1.11 16 2 N -0.66 -12.55 6.25 -115.25 -0.72 -13.27 16 3 C 0.16 3.35 2.44 -68.86 -0.17 3.19 16 4 H 0.07 1.58 7.77 -51.93 -0.40 1.17 16 5 C 0.04 1.11 4.64 -27.88 -0.13 0.98 16 6 C -0.49 -13.93 8.84 -34.44 -0.30 -14.24 16 7 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 8 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 9 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 10 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C -0.16 -3.04 5.11 -102.71 -0.52 -3.57 16 15 C 0.03 0.41 11.03 -16.73 -0.18 0.23 16 16 N -0.60 -8.20 6.07 -10.65 -0.06 -8.26 16 17 H 0.41 4.07 8.96 -40.82 -0.37 3.70 16 18 C 0.09 1.49 7.28 -83.99 -0.61 0.88 16 19 C -0.14 -1.89 10.08 -39.43 -0.40 -2.29 16 20 C -0.10 -1.33 10.01 -39.54 -0.40 -1.73 16 21 C -0.16 -2.24 9.97 -39.94 -0.40 -2.64 16 22 C -0.06 -0.97 10.05 -39.64 -0.40 -1.37 16 23 C -0.10 -1.77 6.35 -105.14 -0.67 -2.43 16 24 H 0.01 0.14 7.99 -51.93 -0.41 -0.27 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.98 7.94 -51.93 -0.41 0.56 16 27 H 0.33 5.61 6.94 -39.29 -0.27 5.34 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.16 2.10 6.90 -52.48 -0.36 1.74 16 32 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -32.75 297.46 -8.96 -41.72 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.73 Total: 5.53 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.65 Total: -20.51 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.05 Total: -48.54 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.75 -8.96 -41.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259464698.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.225 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds