Wall clock time and date at job start Mon Mar 30 2020 07:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 111.00094 * 2 1 4 4 H 1.09002 * 109.46706 * 37.89208 * 3 2 1 5 5 C 1.52995 * 109.47162 * 157.89106 * 3 2 1 6 6 C 1.50706 * 109.47265 * 295.00033 * 5 3 2 7 7 H 1.08000 * 119.99673 * 359.97438 * 6 5 3 8 8 C 1.37877 * 119.99847 * 179.97438 * 6 5 3 9 9 N 1.31511 * 120.00252 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99552 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47291 * 90.00278 * 10 8 6 12 12 H 1.48501 * 109.46887 * 210.00301 * 10 8 6 13 13 H 1.48501 * 109.47214 * 329.99970 * 10 8 6 14 14 C 1.50699 * 109.47177 * 277.89042 * 3 2 1 15 15 C 1.34244 * 126.50228 * 333.77814 * 14 3 2 16 16 N 1.36831 * 109.92949 * 180.18650 * 15 14 3 17 17 H 0.97001 * 125.05898 * 179.81430 * 16 15 14 18 18 C 1.37685 * 109.87242 * 359.54957 * 16 15 14 19 19 C 1.39127 * 133.50830 * 180.26461 * 18 16 15 20 20 C 1.37746 * 119.77996 * 179.97438 * 19 18 16 21 21 C 1.38828 * 120.66891 * 0.02562 * 20 19 18 22 22 C 1.36629 * 120.52558 * 359.97438 * 21 20 19 23 23 C 1.39634 * 119.76504 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46847 * 64.95723 * 1 2 3 25 25 H 1.08992 * 109.46811 * 184.95866 * 1 2 3 26 26 H 1.09000 * 109.47169 * 304.95882 * 1 2 3 27 27 H 1.00902 * 111.00090 * 236.04326 * 2 1 3 28 28 H 1.09002 * 109.47212 * 54.99915 * 5 3 2 29 29 H 1.08999 * 109.47382 * 174.99939 * 5 3 2 30 30 H 0.97000 * 119.99869 * 180.02562 * 9 8 6 31 31 H 1.08004 * 125.03100 * 0.02562 * 15 14 3 32 32 H 1.08004 * 120.10525 * 359.97438 * 19 18 16 33 33 H 1.07998 * 119.66444 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.73950 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.11639 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3685 2.0013 0.6312 5 6 3.4259 1.3686 0.5429 6 6 3.4134 0.9464 1.9895 7 1 2.4785 0.7047 2.4734 8 6 4.5953 0.8687 2.6953 9 7 5.7335 1.1635 2.1062 10 14 4.5796 0.3460 4.4886 11 1 4.7195 -1.1298 4.5753 12 1 5.7094 0.9932 5.2027 13 1 3.2974 0.7593 5.1134 14 6 1.9935 1.9103 -1.4073 15 6 2.0648 1.1905 -2.5382 16 7 2.0410 2.0233 -3.6236 17 1 2.0838 1.7345 -4.5486 18 6 1.9413 3.3319 -3.2072 19 6 1.8750 4.5484 -3.8791 20 6 1.7766 5.7210 -3.1630 21 6 1.7432 5.7026 -1.7753 22 6 1.8070 4.5193 -1.0952 23 6 1.9071 3.3186 -1.8011 24 1 -0.3633 0.4350 -0.9310 25 1 -0.3632 -1.0238 0.0888 26 1 -0.3633 0.5888 0.8422 27 1 1.8306 -0.5262 -0.7813 28 1 4.0322 0.6704 -0.0341 29 1 3.8479 2.3703 0.4604 30 1 6.5650 1.1085 2.6026 31 1 2.1337 0.1136 -2.5843 32 1 1.9007 4.5732 -4.9586 33 1 1.7248 6.6642 -3.6865 34 1 1.6654 6.6309 -1.2289 35 1 1.7810 4.5126 -0.0156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259464698.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:35 Heat of formation + Delta-G solvation = 33.847328 kcal Electronic energy + Delta-G solvation = -17139.117878 eV Core-core repulsion = 14522.217218 eV Total energy + Delta-G solvation = -2616.900660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.19195 -38.25042 -37.32652 -34.78383 -32.87709 -31.31680 -30.22225 -29.48995 -26.81897 -24.97126 -23.72342 -23.04101 -22.51463 -20.06670 -18.98930 -18.19137 -17.26157 -16.58653 -16.32776 -15.85134 -15.58982 -15.40431 -14.83155 -14.59629 -14.53897 -14.29336 -13.60316 -13.48470 -13.18173 -12.73159 -12.58003 -12.54632 -12.49345 -12.42082 -11.98556 -11.76207 -11.54630 -11.10317 -10.47856 -10.38243 -9.12030 -9.10909 -8.50749 -8.06423 -6.13239 0.23732 0.74002 1.43303 1.45277 1.55849 1.76831 2.27312 2.50050 3.02287 3.24817 3.55580 3.87601 3.96942 4.16951 4.27380 4.43861 4.47743 4.59905 4.69086 4.73106 4.79630 4.95096 4.99268 5.08269 5.14971 5.24945 5.54356 5.57961 5.66137 5.73036 5.79537 5.85865 5.93078 6.24631 6.35698 6.48032 6.73906 6.78121 7.00846 7.52405 9.04955 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.006465 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.019940 B = 4329.855966 C = 4852.612726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.681 5.681 3 C 0.182 3.818 4 H 0.052 0.948 5 C 0.055 3.945 6 C -0.501 4.501 7 H 0.058 0.942 8 C -0.007 4.007 9 N -0.941 5.941 10 Si 0.961 3.039 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.266 1.266 14 C -0.211 4.211 15 C 0.049 3.951 16 N -0.582 5.582 17 H 0.431 0.569 18 C 0.081 3.919 19 C -0.133 4.133 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.096 4.096 23 C -0.132 4.132 24 H 0.021 0.979 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.339 0.661 28 H -0.011 1.011 29 H -0.019 1.019 30 H 0.258 0.742 31 H 0.189 0.811 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.491 4.115 -13.758 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.311 5.311 3 C 0.071 3.929 4 H 0.070 0.930 5 C 0.017 3.983 6 C -0.540 4.540 7 H 0.076 0.924 8 C -0.202 4.202 9 N -0.583 5.583 10 Si 0.786 3.214 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.220 4.220 15 C -0.077 4.077 16 N -0.186 5.186 17 H 0.271 0.729 18 C -0.027 4.027 19 C -0.154 4.154 20 C -0.121 4.121 21 C -0.171 4.171 22 C -0.115 4.115 23 C -0.138 4.138 24 H 0.039 0.961 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.157 0.843 28 H 0.008 0.992 29 H 0.000 1.000 30 H 0.067 0.933 31 H 0.206 0.794 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.158 0.842 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.281 3.950 -13.151 17.154 hybrid contribution 0.367 -0.176 -0.088 0.416 sum -9.914 3.773 -13.239 16.964 Atomic orbital electron populations 1.22160 0.87482 1.02096 0.99525 1.60444 1.07787 1.13158 1.49694 1.19715 0.96434 0.87858 0.88877 0.92993 1.18833 0.90869 0.93752 0.94804 1.21494 0.92803 1.42865 0.96807 0.92419 1.25903 0.95351 0.96181 1.02807 1.70121 0.98349 1.51510 1.38328 0.85512 0.77605 0.78370 0.79885 1.20029 1.21185 1.19064 1.21485 1.11532 0.92404 0.96567 1.21675 1.04029 0.96805 0.85198 1.41542 1.64802 1.03427 1.08848 0.72922 1.18563 1.04407 0.86586 0.93097 1.20388 1.05666 0.88766 1.00536 1.21188 0.99049 0.98330 0.93505 1.20908 1.03522 0.97338 0.95308 1.20496 0.99589 0.91965 0.99439 1.19437 1.07164 0.93616 0.93539 0.96050 0.90150 0.93172 0.84278 0.99247 1.00044 0.93288 0.79433 0.83256 0.82407 0.84208 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.52 127.69 1.34 2.47 16 2 N -0.68 -25.95 6.25 -518.53 -3.24 -29.19 16 3 C 0.18 7.98 2.44 44.17 0.11 8.09 16 4 H 0.05 2.42 7.77 -2.39 -0.02 2.41 16 5 C 0.06 3.05 4.64 29.85 0.14 3.19 16 6 C -0.50 -29.66 8.84 25.60 0.23 -29.43 16 7 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 8 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 9 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 10 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 11 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 14 C -0.21 -8.05 5.11 -18.63 -0.10 -8.15 16 15 C 0.05 1.48 11.03 83.00 0.92 2.40 16 16 N -0.58 -14.72 6.07 -187.60 -1.14 -15.86 16 17 H 0.43 7.18 8.96 -92.71 -0.83 6.34 16 18 C 0.08 2.44 7.28 39.03 0.28 2.72 16 19 C -0.13 -3.18 10.08 22.37 0.23 -2.96 16 20 C -0.10 -2.35 10.01 22.29 0.22 -2.12 16 21 C -0.15 -4.22 9.97 22.03 0.22 -4.00 16 22 C -0.10 -3.43 10.05 22.23 0.22 -3.21 16 23 C -0.13 -4.92 6.35 -20.20 -0.13 -5.05 16 24 H 0.02 0.60 7.99 -2.39 -0.02 0.58 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.62 7.94 -2.39 -0.02 1.60 16 27 H 0.34 11.43 6.94 -89.69 -0.62 10.81 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 30 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.19 4.50 6.90 -2.91 -0.02 4.48 16 32 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.10 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -73.97 297.46 1.72 -72.25 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.35 Total: 19.57 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 4.15 Total: -35.98 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.09 Total: -104.43 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.97 1.72 -72.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259464698.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.098 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds