Wall clock time and date at job start Mon Mar 30 2020 05:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38834 * 119.66166 * 2 1 4 4 C 1.36627 * 120.52294 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.76662 * 0.02562 * 4 3 2 6 6 C 1.46487 * 134.03458 * 180.02562 * 5 4 3 7 7 C 1.34233 * 106.99699 * 179.97438 * 6 5 4 8 8 C 1.50707 * 125.03617 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47269 * 155.24850 * 8 7 6 10 10 N 1.46904 * 109.46938 * 35.24016 * 8 7 6 11 11 C 1.50705 * 109.46857 * 275.24603 * 8 7 6 12 12 H 1.07993 * 120.00154 * 359.97438 * 11 8 7 13 13 C 1.37884 * 119.99546 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00100 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 119.99641 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47148 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46514 * 120.00018 * 15 13 11 18 18 H 1.48499 * 109.46896 * 239.99758 * 15 13 11 19 19 N 1.36824 * 109.93205 * 0.02562 * 7 6 5 20 20 C 1.46508 * 125.06394 * 179.97438 * 19 7 6 21 21 C 1.37679 * 109.87457 * 359.97438 * 19 7 6 22 22 C 1.37741 * 119.66902 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46868 * 270.02087 * 1 2 3 24 24 H 1.09001 * 109.47295 * 30.02002 * 1 2 3 25 25 H 1.09002 * 109.47370 * 150.02478 * 1 2 3 26 26 H 1.07994 * 119.73790 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.11625 * 179.97438 * 4 3 2 28 28 H 1.08002 * 126.50078 * 0.22685 * 6 5 4 29 29 H 1.00896 * 110.99441 * 173.69225 * 10 8 7 30 30 H 1.00897 * 111.00095 * 297.65418 * 10 8 7 31 31 H 0.96996 * 119.99910 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.46762 * 84.81330 * 20 19 7 33 33 H 1.08998 * 109.47136 * 204.81465 * 20 19 7 34 34 H 1.08997 * 109.47083 * 324.81565 * 20 19 7 35 35 H 1.08004 * 120.11073 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2270 0.0005 5 6 4.2715 0.0254 0.0005 6 6 5.6965 -0.3142 0.0015 7 6 5.7806 -1.6539 0.0015 8 6 7.0663 -2.4401 0.0029 9 1 6.8889 -3.4258 0.4329 10 7 8.0733 -1.7305 0.8032 11 6 7.5641 -2.5913 -1.4115 12 1 7.0053 -2.1614 -2.2295 13 6 8.7332 -3.2784 -1.6610 14 7 9.4136 -3.8022 -0.6649 15 14 9.3500 -3.4663 -3.4143 16 1 8.4099 -2.7913 -4.3448 17 1 10.6947 -2.8478 -3.5348 18 1 9.4361 -4.9087 -3.7567 19 7 4.5260 -2.2000 0.0001 20 6 4.2329 -3.6354 -0.0008 21 6 3.5801 -1.1996 -0.0003 22 6 2.1888 -1.1968 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6443 2.1360 0.0004 27 1 4.0880 2.1692 0.0001 28 1 6.5227 0.3813 0.0059 29 1 8.9101 -2.2848 0.9052 30 1 8.2834 -0.8285 0.4028 31 1 10.2358 -4.2859 -0.8405 32 1 4.2503 -4.0104 1.0224 33 1 3.2467 -3.8046 -0.4331 34 1 4.9836 -4.1592 -0.5925 35 1 1.6452 -2.1301 0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259499685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:13 Heat of formation + Delta-G solvation = 46.354583 kcal Electronic energy + Delta-G solvation = -17157.394846 eV Core-core repulsion = 14541.036542 eV Total energy + Delta-G solvation = -2616.358304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71539 -37.20459 -34.57820 -32.69672 -31.51201 -30.08060 -29.50607 -26.51405 -25.75799 -25.14092 -22.75475 -21.01390 -20.48272 -18.43147 -16.63236 -16.38392 -15.85523 -14.88037 -14.68589 -14.40102 -13.99606 -13.56479 -13.41601 -13.04894 -12.79915 -12.55513 -12.15166 -12.10199 -11.93330 -11.66282 -11.32781 -11.18343 -11.01247 -10.82092 -10.42822 -10.37776 -9.99623 -9.80472 -8.98400 -8.75325 -7.48662 -7.28604 -6.87277 -6.19650 -4.37594 1.66813 2.11497 3.15277 3.24526 3.29410 3.48107 3.56901 4.25966 4.39714 5.02304 5.08485 5.21653 5.27392 5.49544 5.52751 5.68576 5.70764 5.73307 5.87704 5.96595 5.98378 6.08703 6.23428 6.38446 6.57717 6.66054 6.74850 6.99304 7.04657 7.12449 7.39313 7.64901 7.69073 7.83813 8.03143 8.09932 8.56337 8.81764 9.02177 9.35326 10.77153 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.005815 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.516763 B = 4813.820038 C = 4897.635176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.090 4.090 3 C -0.155 4.155 4 C -0.076 4.076 5 C -0.102 4.102 6 C -0.223 4.223 7 C 0.149 3.851 8 C 0.264 3.736 9 H 0.046 0.954 10 N -0.844 5.844 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.892 5.892 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.483 5.483 20 C 0.081 3.919 21 C 0.089 3.911 22 C -0.128 4.128 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.358 0.642 30 H 0.318 0.682 31 H 0.267 0.733 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.700 4.031 1.206 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.091 4.091 3 C -0.174 4.174 4 C -0.094 4.094 5 C -0.107 4.107 6 C -0.247 4.247 7 C 0.041 3.959 8 C 0.153 3.847 9 H 0.063 0.937 10 N -0.375 5.375 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.135 4.135 14 N -0.531 5.531 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.166 5.166 20 C -0.061 4.061 21 C -0.017 4.017 22 C -0.149 4.149 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.100 3.508 1.855 12.734 hybrid contribution 1.013 -0.345 -1.879 2.162 sum -11.087 3.162 -0.024 11.529 Atomic orbital electron populations 1.20671 0.91785 1.02018 1.01594 1.19329 0.95068 0.92402 1.02335 1.20321 0.93872 0.96733 1.06487 1.20167 0.93427 0.96202 0.99631 1.19328 0.93933 0.92075 1.05343 1.21182 0.93124 0.94004 1.16374 1.21153 0.85758 0.93274 0.95709 1.17583 0.83467 0.91264 0.92407 0.93650 1.59307 1.17108 1.07280 1.53795 1.21802 1.08071 1.35525 0.93074 0.92325 1.25010 0.96395 0.94384 0.97717 1.69752 1.16502 1.36023 1.30848 0.86409 0.78771 0.77894 0.84232 1.19665 1.20744 1.20817 1.43787 1.04585 1.05079 1.63154 1.21847 1.02414 0.79303 1.02566 1.18218 0.90537 0.88133 1.04812 1.19714 0.90037 0.97555 1.07547 0.91871 0.91999 0.92231 0.86971 0.86697 0.84367 0.82544 0.87206 0.92332 0.91964 0.91084 0.89115 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.99 36.01 0.36 -0.77 16 2 C -0.09 -1.34 5.88 -104.58 -0.61 -1.95 16 3 C -0.15 -2.33 9.62 -39.94 -0.38 -2.71 16 4 C -0.08 -1.29 10.05 -39.64 -0.40 -1.69 16 5 C -0.10 -2.04 6.37 -105.14 -0.67 -2.71 16 6 C -0.22 -4.84 10.35 -37.67 -0.39 -5.23 16 7 C 0.15 3.36 5.83 -81.77 -0.48 2.88 16 8 C 0.26 6.46 2.75 -70.01 -0.19 6.26 16 9 H 0.05 1.19 7.44 -51.93 -0.39 0.80 16 10 N -0.84 -19.92 8.98 -6.64 -0.06 -19.98 16 11 C -0.54 -14.31 8.69 -34.44 -0.30 -14.61 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 14 N -0.89 -23.69 11.57 55.43 0.64 -23.05 16 15 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 N -0.48 -9.81 3.18 -117.19 -0.37 -10.19 16 20 C 0.08 1.34 10.48 59.85 0.63 1.97 16 21 C 0.09 1.75 6.80 -83.99 -0.57 1.17 16 22 C -0.13 -2.11 9.52 -39.43 -0.38 -2.48 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.14 2.85 7.45 -52.49 -0.39 2.46 16 29 H 0.36 8.89 7.15 -39.29 -0.28 8.61 16 30 H 0.32 7.22 8.03 -39.29 -0.32 6.91 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 34 H 0.09 1.60 7.66 -51.93 -0.40 1.20 16 35 H 0.11 1.56 7.90 -52.48 -0.41 1.15 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -28.19 294.38 -8.52 -36.71 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.66 Total: 14.78 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -3.48 Total: -18.19 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.21 Total: -53.21 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.19 -8.52 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.065 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds