Wall clock time and date at job start Mon Mar 30 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38833 * 119.66891 * 2 1 4 4 C 1.36619 * 120.52952 * 180.25592 * 3 2 1 5 5 C 1.39630 * 119.76480 * 359.74992 * 4 3 2 6 6 C 1.46487 * 134.03338 * 180.02562 * 5 4 3 7 7 C 1.34240 * 106.99511 * 179.97438 * 6 5 4 8 8 C 1.50701 * 125.03480 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47381 * 204.97037 * 8 7 6 10 10 N 1.46898 * 109.47369 * 324.97120 * 8 7 6 11 11 C 1.50704 * 109.47120 * 84.97125 * 8 7 6 12 12 H 1.07998 * 120.00301 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99848 * 180.02562 * 11 8 7 14 14 N 1.31522 * 120.00292 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00215 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46888 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47215 * 119.99662 * 15 13 11 18 18 H 1.48498 * 109.47327 * 240.00287 * 15 13 11 19 19 N 1.36823 * 109.93318 * 359.97438 * 7 6 5 20 20 C 1.46498 * 125.06618 * 180.02562 * 19 7 6 21 21 C 1.37693 * 109.87160 * 0.02562 * 19 7 6 22 22 C 1.37745 * 119.66547 * 179.74752 * 2 1 3 23 23 H 1.08998 * 109.47057 * 270.25408 * 1 2 3 24 24 H 1.09002 * 109.46787 * 30.24916 * 1 2 3 25 25 H 1.08996 * 109.47001 * 150.24799 * 1 2 3 26 26 H 1.08005 * 119.73383 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.12058 * 179.72939 * 4 3 2 28 28 H 1.08002 * 126.50749 * 0.02562 * 6 5 4 29 29 H 1.00899 * 111.00040 * 296.05232 * 10 8 7 30 30 H 1.00902 * 110.99862 * 59.99422 * 10 8 7 31 31 H 0.96999 * 120.00259 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.47446 * 270.02470 * 20 19 7 33 33 H 1.08994 * 109.47045 * 30.03092 * 20 19 7 34 34 H 1.09001 * 109.47099 * 150.02682 * 20 19 7 35 35 H 1.08002 * 120.11529 * 0.02826 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.2063 0.0000 4 6 3.5603 1.2268 -0.0053 5 6 4.2716 0.0253 -0.0054 6 6 5.6965 -0.3144 -0.0096 7 6 5.7806 -1.6541 -0.0068 8 6 7.0662 -2.4404 -0.0089 9 1 6.8889 -3.4258 -0.4399 10 7 8.0732 -1.7302 -0.8086 11 6 7.5641 -2.5929 1.4053 12 1 7.0053 -2.1638 2.2238 13 6 8.7332 -3.2802 1.6542 14 7 9.4135 -3.8032 0.6575 15 14 9.3508 -3.4687 3.4070 16 1 8.4106 -2.7948 4.3382 17 1 9.4367 -4.9112 3.7492 18 1 10.6956 -2.8505 3.5272 19 7 4.5260 -2.2002 -0.0005 20 6 4.2328 -3.6355 0.0047 21 6 3.5801 -1.1996 0.0003 22 6 2.1888 -1.1969 0.0053 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8922 -0.5100 26 1 1.6445 2.1360 -0.0004 27 1 4.0882 2.1691 -0.0096 28 1 6.5229 0.3811 -0.0134 29 1 7.7915 -1.6717 -1.7757 30 1 8.2553 -0.8132 -0.4291 31 1 10.2361 -4.2864 0.8326 32 1 4.1566 -3.9945 -1.0217 33 1 5.0337 -4.1681 0.5174 34 1 3.2898 -3.8119 0.5222 35 1 1.6452 -2.1301 0.0089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259499688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:16 Heat of formation + Delta-G solvation = 53.402534 kcal Electronic energy + Delta-G solvation = -17157.758767 eV Core-core repulsion = 14541.706085 eV Total energy + Delta-G solvation = -2616.052682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80117 -37.28416 -34.39660 -32.76150 -31.60847 -30.14239 -29.54771 -26.52954 -25.81092 -25.12116 -22.71677 -21.05553 -20.54454 -18.53218 -16.51879 -16.38432 -15.80511 -14.82668 -14.73418 -14.40387 -14.13150 -13.67849 -13.45641 -13.42925 -12.92292 -12.36993 -12.20927 -12.14305 -11.99259 -11.73898 -11.40173 -11.09341 -10.88477 -10.77066 -10.46527 -10.41854 -9.90267 -9.31652 -8.99805 -8.52334 -7.51510 -7.32175 -6.92927 -5.97100 -4.13058 1.58708 2.04210 3.28029 3.34854 3.37900 3.44468 3.47655 4.30591 4.43323 5.01910 5.15457 5.23032 5.28920 5.42406 5.47590 5.64227 5.64755 5.68744 5.81513 5.91340 5.93914 6.04279 6.17950 6.22831 6.39399 6.53405 6.58890 6.90458 6.99391 7.05633 7.29684 7.54378 7.82923 7.84372 7.93985 8.09007 8.53073 8.90914 9.03221 9.56563 11.06828 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.005827 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.298074 B = 4804.460995 C = 4888.603952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.077 4.077 5 C -0.101 4.101 6 C -0.240 4.240 7 C 0.107 3.893 8 C 0.275 3.725 9 H 0.046 0.954 10 N -0.800 5.800 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.085 3.915 14 N -0.845 5.845 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.282 1.282 19 N -0.480 5.480 20 C 0.080 3.920 21 C 0.088 3.912 22 C -0.127 4.127 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.301 0.699 30 H 0.323 0.677 31 H 0.257 0.743 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.045 4.568 -2.374 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.173 4.173 4 C -0.095 4.095 5 C -0.106 4.106 6 C -0.264 4.264 7 C -0.003 4.003 8 C 0.164 3.836 9 H 0.064 0.936 10 N -0.325 5.325 11 C -0.571 4.571 12 H 0.074 0.926 13 C -0.122 4.122 14 N -0.480 5.480 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.208 1.208 19 N -0.163 5.163 20 C -0.062 4.062 21 C -0.019 4.019 22 C -0.148 4.148 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.155 0.845 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.388 3.489 -2.236 13.062 hybrid contribution -0.378 0.560 0.838 1.076 sum -12.766 4.048 -1.398 13.465 Atomic orbital electron populations 1.20678 0.91709 1.02046 1.01686 1.19354 0.95138 0.92389 1.02139 1.20334 0.93860 0.96790 1.06310 1.20168 0.93464 0.96179 0.99705 1.19280 0.93777 0.92127 1.05400 1.21217 0.93478 0.94048 1.17676 1.22992 0.87359 0.94251 0.95672 1.17973 0.79290 0.91242 0.95093 0.93606 1.59298 1.46903 1.23346 1.02924 1.20812 1.08976 1.37139 0.90132 0.92607 1.24937 0.96216 0.94632 0.96436 1.70110 1.14831 1.33048 1.29990 0.86644 0.78943 0.77687 0.85302 1.19839 1.21045 1.20848 1.43936 1.04620 1.05142 1.62617 1.21871 1.02931 0.79201 1.02231 1.18303 0.90640 0.88227 1.04696 1.19742 0.90081 0.97600 1.07400 0.91800 0.91961 0.92182 0.86902 0.86708 0.84514 0.88886 0.86416 0.93320 0.92106 0.88586 0.91166 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.99 36.01 0.36 -0.75 16 2 C -0.09 -1.29 5.88 -104.58 -0.61 -1.91 16 3 C -0.15 -2.26 9.62 -39.95 -0.38 -2.64 16 4 C -0.08 -1.27 10.05 -39.65 -0.40 -1.67 16 5 C -0.10 -1.97 6.37 -105.14 -0.67 -2.64 16 6 C -0.24 -5.00 10.33 -37.67 -0.39 -5.39 16 7 C 0.11 2.33 5.82 -81.77 -0.48 1.86 16 8 C 0.28 6.62 2.62 -70.02 -0.18 6.44 16 9 H 0.05 1.18 7.34 -51.93 -0.38 0.80 16 10 N -0.80 -18.38 8.37 -6.65 -0.06 -18.43 16 11 C -0.53 -14.23 8.71 -34.44 -0.30 -14.53 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.09 2.30 5.39 -17.82 -0.10 2.21 16 14 N -0.85 -23.77 12.77 55.43 0.71 -23.07 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 N -0.48 -9.46 3.18 -117.20 -0.37 -9.84 16 20 C 0.08 1.29 10.56 59.85 0.63 1.92 16 21 C 0.09 1.67 6.81 -83.99 -0.57 1.10 16 22 C -0.13 -2.06 9.59 -39.43 -0.38 -2.44 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.14 2.69 7.39 -52.49 -0.39 2.30 16 29 H 0.30 6.23 9.06 -39.29 -0.36 5.87 16 30 H 0.32 7.15 7.94 -39.29 -0.31 6.84 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.67 7.40 -51.93 -0.38 1.29 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -29.89 296.81 -8.47 -38.37 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.74 Total: 11.02 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.47 Total: -18.44 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.28 Total: -51.34 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.89 -8.47 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.771 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds