Wall clock time and date at job start Mon Mar 30 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38833 * 119.66891 * 2 1 4 4 C 1.36619 * 120.52952 * 180.25592 * 3 2 1 5 5 C 1.39630 * 119.76480 * 359.74992 * 4 3 2 6 6 C 1.46487 * 134.03338 * 180.02562 * 5 4 3 7 7 C 1.34240 * 106.99511 * 179.97438 * 6 5 4 8 8 C 1.50701 * 125.03480 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47381 * 204.97037 * 8 7 6 10 10 N 1.46898 * 109.47369 * 324.97120 * 8 7 6 11 11 C 1.50704 * 109.47120 * 84.97125 * 8 7 6 12 12 H 1.07998 * 120.00301 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99848 * 180.02562 * 11 8 7 14 14 N 1.31522 * 120.00292 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00215 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46888 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47215 * 119.99662 * 15 13 11 18 18 H 1.48498 * 109.47327 * 240.00287 * 15 13 11 19 19 N 1.36823 * 109.93318 * 359.97438 * 7 6 5 20 20 C 1.46498 * 125.06618 * 180.02562 * 19 7 6 21 21 C 1.37693 * 109.87160 * 0.02562 * 19 7 6 22 22 C 1.37745 * 119.66547 * 179.74752 * 2 1 3 23 23 H 1.08998 * 109.47057 * 270.25408 * 1 2 3 24 24 H 1.09002 * 109.46787 * 30.24916 * 1 2 3 25 25 H 1.08996 * 109.47001 * 150.24799 * 1 2 3 26 26 H 1.08005 * 119.73383 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.12058 * 179.72939 * 4 3 2 28 28 H 1.08002 * 126.50749 * 0.02562 * 6 5 4 29 29 H 1.00899 * 111.00040 * 296.05232 * 10 8 7 30 30 H 1.00902 * 110.99862 * 59.99422 * 10 8 7 31 31 H 0.96999 * 120.00259 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.47446 * 270.02470 * 20 19 7 33 33 H 1.08994 * 109.47045 * 30.03092 * 20 19 7 34 34 H 1.09001 * 109.47099 * 150.02682 * 20 19 7 35 35 H 1.08002 * 120.11529 * 0.02826 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.2063 0.0000 4 6 3.5603 1.2268 -0.0053 5 6 4.2716 0.0253 -0.0054 6 6 5.6965 -0.3144 -0.0096 7 6 5.7806 -1.6541 -0.0068 8 6 7.0662 -2.4404 -0.0089 9 1 6.8889 -3.4258 -0.4399 10 7 8.0732 -1.7302 -0.8086 11 6 7.5641 -2.5929 1.4053 12 1 7.0053 -2.1638 2.2238 13 6 8.7332 -3.2802 1.6542 14 7 9.4135 -3.8032 0.6575 15 14 9.3508 -3.4687 3.4070 16 1 8.4106 -2.7948 4.3382 17 1 9.4367 -4.9112 3.7492 18 1 10.6956 -2.8505 3.5272 19 7 4.5260 -2.2002 -0.0005 20 6 4.2328 -3.6355 0.0047 21 6 3.5801 -1.1996 0.0003 22 6 2.1888 -1.1969 0.0053 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8922 -0.5100 26 1 1.6445 2.1360 -0.0004 27 1 4.0882 2.1691 -0.0096 28 1 6.5229 0.3811 -0.0134 29 1 7.7915 -1.6717 -1.7757 30 1 8.2553 -0.8132 -0.4291 31 1 10.2361 -4.2864 0.8326 32 1 4.1566 -3.9945 -1.0217 33 1 5.0337 -4.1681 0.5174 34 1 3.2898 -3.8119 0.5222 35 1 1.6452 -2.1301 0.0089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259499688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:15 Heat of formation + Delta-G solvation = 35.530302 kcal Electronic energy + Delta-G solvation = -17158.533765 eV Core-core repulsion = 14541.706085 eV Total energy + Delta-G solvation = -2616.827681 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20980 -38.58790 -36.21509 -34.11149 -33.50859 -31.41174 -30.88088 -28.34913 -27.14276 -26.58526 -24.34125 -22.50067 -21.84220 -20.07506 -18.53846 -17.79048 -17.16874 -16.63134 -16.18540 -15.89783 -15.76273 -15.06600 -14.76467 -14.58414 -14.37955 -14.17581 -13.54776 -13.40070 -13.17914 -13.08807 -12.85810 -12.76437 -12.64668 -12.39528 -11.97024 -11.74965 -11.62235 -11.20978 -10.60745 -10.39659 -9.16550 -8.83691 -8.40027 -8.02878 -6.26290 0.28478 0.77255 1.39698 1.42832 1.52903 1.87820 2.05136 2.45566 3.01721 3.19928 3.81860 3.94560 4.05803 4.10927 4.31188 4.38014 4.40066 4.49574 4.60537 4.66324 4.72322 4.86541 4.92955 4.98484 5.05268 5.07887 5.33921 5.34951 5.66205 5.70580 5.77414 5.94640 6.02144 6.14116 6.38700 6.54385 6.60202 6.99556 7.15865 7.46563 8.99213 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.005827 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.298074 B = 4804.460995 C = 4888.603952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.086 4.086 5 C -0.136 4.136 6 C -0.246 4.246 7 C 0.080 3.920 8 C 0.286 3.714 9 H 0.021 0.979 10 N -0.808 5.808 11 C -0.542 4.542 12 H 0.038 0.962 13 C 0.042 3.958 14 N -0.874 5.874 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.277 1.277 18 H -0.279 1.279 19 N -0.488 5.488 20 C 0.077 3.923 21 C 0.071 3.929 22 C -0.140 4.140 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.313 0.687 30 H 0.327 0.673 31 H 0.258 0.742 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 5.530 -1.990 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.080 4.080 3 C -0.169 4.169 4 C -0.104 4.104 5 C -0.141 4.141 6 C -0.271 4.271 7 C -0.031 4.031 8 C 0.174 3.826 9 H 0.038 0.962 10 N -0.334 5.334 11 C -0.581 4.581 12 H 0.057 0.943 13 C -0.162 4.162 14 N -0.510 5.510 15 Si 0.774 3.226 16 H -0.201 1.201 17 H -0.202 1.202 18 H -0.205 1.205 19 N -0.171 5.171 20 C -0.064 4.064 21 C -0.035 4.035 22 C -0.161 4.161 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.888 4.446 -1.854 15.648 hybrid contribution 0.231 0.353 0.686 0.806 sum -14.657 4.799 -1.168 15.467 Atomic orbital electron populations 1.20769 0.88474 1.03687 1.03029 1.19925 0.97436 0.91613 0.99053 1.20794 0.93228 0.98487 1.04373 1.20476 0.94560 0.95864 0.99505 1.19527 0.93129 0.93766 1.07631 1.21355 0.94722 0.93837 1.17153 1.22498 0.87535 0.94478 0.98571 1.17539 0.80783 0.90605 0.93650 0.96161 1.59147 1.47167 1.23438 1.03641 1.20969 1.09035 1.36953 0.91133 0.94331 1.25593 0.96354 0.94348 0.99929 1.70209 1.15200 1.33812 1.31749 0.85683 0.78143 0.77822 0.80904 1.20132 1.20215 1.20475 1.44042 1.04120 1.06332 1.62642 1.22002 1.03373 0.77643 1.03359 1.18720 0.91778 0.87796 1.05203 1.20101 0.88895 0.99448 1.07667 0.90409 0.90035 0.90973 0.83461 0.85137 0.84606 0.87604 0.86077 0.93242 0.90572 0.90731 0.88392 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.99 71.24 0.71 -0.98 16 2 C -0.08 -2.01 5.88 -19.84 -0.12 -2.12 16 3 C -0.15 -3.89 9.62 22.03 0.21 -3.68 16 4 C -0.09 -2.70 10.05 22.23 0.22 -2.47 16 5 C -0.14 -5.28 6.37 -20.20 -0.13 -5.41 16 6 C -0.25 -10.54 10.33 23.51 0.24 -10.30 16 7 C 0.08 3.58 5.82 40.87 0.24 3.82 16 8 C 0.29 14.33 2.62 43.42 0.11 14.44 16 9 H 0.02 1.11 7.34 -2.38 -0.02 1.10 16 10 N -0.81 -38.44 8.37 -174.94 -1.46 -39.91 16 11 C -0.54 -29.99 8.71 25.60 0.22 -29.77 16 12 H 0.04 2.22 7.74 -2.91 -0.02 2.19 16 13 C 0.04 2.33 5.39 84.65 0.46 2.79 16 14 N -0.87 -50.13 12.77 21.45 0.27 -49.86 16 15 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 N -0.49 -19.54 3.18 -524.71 -1.67 -21.21 16 20 C 0.08 2.53 10.56 127.77 1.35 3.88 16 21 C 0.07 2.67 6.81 39.03 0.27 2.93 16 22 C -0.14 -4.20 9.59 22.37 0.21 -3.99 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 26 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.14 5.57 7.39 -2.91 -0.02 5.55 16 29 H 0.31 13.42 9.06 -89.69 -0.81 12.61 16 30 H 0.33 14.98 7.94 -89.69 -0.71 14.27 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.73 7.40 -2.39 -0.02 2.71 16 34 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 35 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -65.21 296.81 2.75 -62.46 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.42 Total: 33.67 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 4.01 Total: -30.86 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -2.86 Total: -110.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -65.21 2.75 -62.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.989 kcal (2) G-P(sol) polarization free energy of solvation -65.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds