Wall clock time and date at job start Mon Mar 30 2020 07:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47396 * 300.00516 * 3 2 1 6 6 H 1.48506 * 109.46704 * 60.00442 * 3 2 1 7 7 C 1.37885 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 173.70621 * 7 2 1 9 9 C 1.50705 * 119.99754 * 353.70378 * 7 2 1 10 10 C 1.53000 * 110.01548 * 300.93813 * 9 7 2 11 11 C 1.52994 * 109.47400 * 302.95715 * 10 9 7 12 12 C 1.50700 * 109.47389 * 176.10503 * 11 10 9 13 13 C 1.38237 * 120.00148 * 89.99682 * 12 11 10 14 14 C 1.38230 * 119.99923 * 180.02562 * 13 12 11 15 15 C 1.38233 * 119.99923 * 359.94805 * 14 13 12 16 16 C 1.38232 * 120.00449 * 0.28354 * 15 14 13 17 17 C 1.38228 * 119.99777 * 270.02403 * 12 11 10 18 18 C 1.54262 * 110.07200 * 62.35905 * 9 7 2 19 19 C 1.54896 * 104.19699 * 95.69441 * 18 9 7 20 20 C 1.54886 * 102.74513 * 37.94073 * 19 18 9 21 21 C 1.53879 * 110.02825 * 179.54651 * 9 7 2 22 22 H 0.96998 * 120.00308 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46387 * 182.95275 * 10 9 7 24 24 H 1.09000 * 109.46949 * 62.95810 * 10 9 7 25 25 H 1.09000 * 109.47312 * 56.09657 * 11 10 9 26 26 H 1.09007 * 109.46842 * 296.10413 * 11 10 9 27 27 H 1.07998 * 119.99660 * 359.97438 * 13 12 11 28 28 H 1.08003 * 119.99784 * 179.97438 * 14 13 12 29 29 H 1.08003 * 119.99839 * 180.02562 * 15 14 13 30 30 H 1.07996 * 120.00179 * 179.71876 * 16 15 14 31 31 H 1.07996 * 120.00215 * 359.97438 * 17 12 11 32 32 H 1.09002 * 110.48466 * 214.37290 * 18 9 7 33 33 H 1.09005 * 110.49029 * 337.01856 * 18 9 7 34 34 H 1.08994 * 110.75573 * 279.62511 * 19 18 9 35 35 H 1.09004 * 110.75607 * 156.25482 * 19 18 9 36 36 H 1.09001 * 110.48727 * 203.37518 * 20 19 18 37 37 H 1.09000 * 110.48804 * 80.73620 * 20 19 18 38 38 H 1.09003 * 110.03313 * 359.95492 * 21 9 7 39 39 H 1.09004 * 110.02597 * 121.38166 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0796 -1.1968 -0.1031 9 6 1.2578 -2.4954 0.1420 10 6 0.4773 -2.5098 1.4579 11 6 1.4405 -2.2830 2.6247 12 6 0.6604 -2.2018 3.9116 13 6 0.4111 -3.3484 4.6423 14 6 -0.3048 -3.2739 5.8224 15 6 -0.7706 -2.0527 6.2723 16 6 -0.5254 -0.9067 5.5392 17 6 0.1938 -0.9807 4.3609 18 6 0.2932 -2.6852 -1.0467 19 6 1.0881 -3.5638 -2.0445 20 6 1.8438 -4.5421 -1.1113 21 6 2.2438 -3.6761 0.1009 22 1 -0.4850 0.8400 0.0004 23 1 -0.0167 -3.4741 1.5766 24 1 -0.2710 -1.7173 1.4452 25 1 1.9852 -1.3515 2.4705 26 1 2.1464 -3.1118 2.6795 27 1 0.7750 -4.3025 4.2907 28 1 -0.5000 -4.1699 6.3931 29 1 -1.3296 -1.9944 7.1946 30 1 -0.8932 0.0468 5.8885 31 1 0.3885 -0.0849 3.7901 32 1 -0.6129 -3.1983 -0.7246 33 1 0.0484 -1.7231 -1.4969 34 1 1.7893 -2.9583 -2.6187 35 1 0.4119 -4.1054 -2.7060 36 1 2.7306 -4.9353 -1.6085 37 1 1.1881 -5.3552 -0.7996 38 1 3.2622 -3.3079 -0.0229 39 1 2.1661 -4.2593 1.0185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259527658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:32 Heat of formation + Delta-G solvation = -14.580672 kcal Electronic energy + Delta-G solvation = -17853.318844 eV Core-core repulsion = 15337.858532 eV Total energy + Delta-G solvation = -2515.460312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.24255 -39.21571 -34.93238 -34.02421 -31.68380 -31.12667 -29.11905 -28.12187 -26.19344 -23.87396 -23.34215 -21.82959 -21.05086 -19.99795 -17.72964 -17.49835 -16.70670 -16.20527 -16.02078 -15.74119 -15.30330 -14.45890 -14.26661 -14.04263 -13.95550 -13.85034 -13.56336 -13.17585 -12.85418 -12.46869 -12.40751 -12.23205 -11.97068 -11.86967 -11.67074 -11.48014 -11.37357 -11.11237 -10.98613 -10.69654 -10.53224 -10.21176 -9.74412 -9.39601 -7.94367 -6.02784 0.57383 0.58249 1.37301 1.43125 1.50160 2.48306 2.98740 3.30787 4.07097 4.07908 4.20077 4.24128 4.29493 4.32038 4.37216 4.57251 4.74351 4.82508 4.86332 4.93501 5.00012 5.05473 5.14275 5.18373 5.22500 5.26161 5.28824 5.40006 5.44036 5.57316 5.64186 5.67234 5.68864 5.78665 5.80843 5.84407 5.96828 6.20285 6.24111 6.32971 6.61484 7.04257 7.60802 9.06637 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.008736 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.004522 B = 3204.497959 C = 4302.012367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 0.922 3.078 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.499 4.499 8 H 0.042 0.958 9 C 0.062 3.938 10 C -0.077 4.077 11 C -0.060 4.060 12 C -0.083 4.083 13 C -0.134 4.134 14 C -0.119 4.119 15 C -0.136 4.136 16 C -0.126 4.126 17 C -0.140 4.140 18 C -0.098 4.098 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.113 4.113 22 H 0.253 0.747 23 H 0.023 0.977 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.023 0.977 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -6.752 7.984 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.169 4.169 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.061 3.939 10 C -0.115 4.115 11 C -0.097 4.097 12 C -0.083 4.083 13 C -0.152 4.152 14 C -0.137 4.137 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.136 4.136 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.150 4.150 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.152 0.848 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.430 -6.619 7.982 10.378 hybrid contribution 0.359 1.550 -0.351 1.630 sum -0.070 -5.069 7.631 9.161 Atomic orbital electron populations 1.70046 1.06419 1.25933 1.51428 1.25370 0.95240 1.00652 0.95659 0.86063 0.79582 0.82214 0.77154 1.19680 1.21420 1.21217 1.21402 0.92466 0.91548 1.48347 0.93979 1.18798 0.91753 0.92184 0.91136 1.21355 0.97803 0.97846 0.94525 1.20452 0.96954 1.01495 0.90843 1.20317 0.97833 0.93786 0.96337 1.21265 1.00308 0.97767 0.95868 1.21457 0.97434 0.98828 0.96000 1.21414 1.00887 0.92230 1.00798 1.21359 0.98492 0.99873 0.94681 1.21150 0.99997 0.97370 0.97354 1.22214 0.96270 0.97761 0.97345 1.22421 0.98505 0.97247 0.97375 1.22288 0.99509 0.97192 0.96143 1.22308 0.98882 0.96566 0.97255 0.93747 0.95861 0.93091 0.92874 0.91865 0.85232 0.83315 0.83365 0.84848 0.88523 0.95809 0.93417 0.93299 0.91956 0.91492 0.91612 0.93859 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.84 9.93 21.45 0.21 -49.62 16 2 C 0.03 1.60 4.97 84.66 0.42 2.02 16 3 Si 0.92 43.35 29.54 68.60 2.03 45.37 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 7 C -0.50 -26.11 6.55 25.60 0.17 -25.94 16 8 H 0.04 2.25 7.33 -2.91 -0.02 2.22 16 9 C 0.06 2.87 0.37 -52.20 -0.02 2.86 16 10 C -0.08 -3.55 3.70 30.59 0.11 -3.44 16 11 C -0.06 -2.52 4.87 29.85 0.15 -2.37 16 12 C -0.08 -3.12 5.13 -19.87 -0.10 -3.22 16 13 C -0.13 -4.19 9.70 22.27 0.22 -3.98 16 14 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 15 C -0.14 -3.47 10.05 22.27 0.22 -3.24 16 16 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 17 C -0.14 -5.29 9.70 22.27 0.22 -5.07 16 18 C -0.10 -4.57 5.43 31.67 0.17 -4.40 16 19 C -0.12 -4.56 6.91 31.89 0.22 -4.34 16 20 C -0.11 -3.93 6.83 31.67 0.22 -3.71 16 21 C -0.11 -4.49 5.62 31.32 0.18 -4.31 16 22 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.05 2.69 6.38 -2.39 -0.02 2.68 16 25 H 0.05 2.50 6.96 -2.39 -0.02 2.48 16 26 H 0.06 2.42 6.81 -2.38 -0.02 2.41 16 27 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 28 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.10 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 33 H 0.05 2.55 6.29 -2.38 -0.01 2.53 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.77 7.37 -2.39 -0.02 1.75 16 39 H 0.05 1.98 6.63 -2.38 -0.02 1.97 16 Total: -1.00 -57.62 305.64 5.85 -51.77 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.00 Total: 18.10 kcal Atomic # 6 Polarization: -68.23 SS G_CDS: 2.61 Total: -65.61 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.21 Total: -49.62 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -57.62 5.85 -51.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259527658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.185 kcal (2) G-P(sol) polarization free energy of solvation -57.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds