Wall clock time and date at job start Mon Mar 30 2020 07:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36829 * 125.06281 * 2 1 4 4 C 1.50703 * 125.03167 * 0.02562 * 3 2 1 5 5 H 1.08996 * 109.47418 * 334.72417 * 4 3 2 6 6 C 1.50700 * 109.46611 * 94.72526 * 4 3 2 7 7 H 1.07999 * 120.00425 * 34.98186 * 6 4 3 8 8 C 1.37886 * 119.99891 * 214.98050 * 6 4 3 9 9 N 1.31511 * 120.00078 * 184.77552 * 8 6 4 10 10 Si 1.86803 * 119.99706 * 4.77723 * 8 6 4 11 11 H 1.48495 * 109.47518 * 84.86342 * 10 8 6 12 12 H 1.48504 * 109.46890 * 204.86770 * 10 8 6 13 13 H 1.48505 * 109.47055 * 324.85997 * 10 8 6 14 14 C 1.53002 * 109.46990 * 214.72129 * 4 3 2 15 15 N 1.46892 * 109.47066 * 65.17493 * 14 4 3 16 16 C 1.34236 * 109.93303 * 179.73980 * 3 2 1 17 17 C 1.46489 * 106.99431 * 0.26765 * 16 3 2 18 18 C 1.39631 * 134.03459 * 180.02562 * 17 16 3 19 19 C 1.36618 * 119.77059 * 179.97438 * 18 17 16 20 20 C 1.38837 * 120.52371 * 359.97438 * 19 18 17 21 21 C 1.37737 * 120.66908 * 359.97438 * 20 19 18 22 22 C 1.37686 * 125.06263 * 180.21140 * 2 1 3 23 23 H 1.08999 * 109.46849 * 89.99989 * 1 2 3 24 24 H 1.09004 * 109.46687 * 209.99957 * 1 2 3 25 25 H 1.08999 * 109.46834 * 329.99429 * 1 2 3 26 26 H 0.97004 * 119.99859 * 179.97438 * 9 8 6 27 27 H 1.09001 * 109.47245 * 305.16674 * 14 4 3 28 28 H 1.09001 * 109.46741 * 185.17347 * 14 4 3 29 29 H 1.00899 * 111.00855 * 56.04214 * 15 14 4 30 30 H 1.00901 * 111.00219 * 180.02562 * 15 14 4 31 31 H 1.07993 * 126.50480 * 180.28736 * 16 3 2 32 32 H 1.08004 * 120.11561 * 359.97438 * 18 17 16 33 33 H 1.08000 * 119.73880 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.66053 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.11313 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 1.7380 2.5370 0.0006 5 1 0.7404 2.5624 -0.4378 6 6 1.6776 3.0487 1.4167 7 1 2.4242 2.7418 2.1342 8 6 0.6690 3.9087 1.7966 9 7 0.6687 4.4292 3.0043 10 14 -0.6969 4.3346 0.5956 11 1 -1.7528 3.2922 0.6568 12 1 -1.2802 5.6518 0.9561 13 1 -0.1436 4.3985 -0.7811 14 6 2.6789 3.4204 -0.8212 15 7 2.6428 2.9984 -2.2278 16 6 3.5469 0.7696 0.0057 17 6 3.5946 -0.6945 0.0032 18 6 4.6295 -1.6319 0.0070 19 6 4.3362 -2.9662 0.0034 20 6 3.0167 -3.3981 -0.0035 21 6 1.9804 -2.4907 -0.0063 22 6 2.2560 -1.1270 -0.0042 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 -0.0407 5.0346 3.2713 27 1 3.6949 3.3234 -0.4386 28 1 2.3598 4.4599 -0.7454 29 1 1.7002 3.0177 -2.5872 30 1 3.2569 3.5668 -2.7917 31 1 4.3936 1.4399 0.0115 32 1 5.6583 -1.3032 0.0127 33 1 5.1370 -3.6908 0.0059 34 1 2.8007 -4.4563 -0.0059 35 1 0.9573 -2.8366 -0.0112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259542910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:17 Heat of formation + Delta-G solvation = 54.966478 kcal Electronic energy + Delta-G solvation = -17489.399094 eV Core-core repulsion = 14873.414230 eV Total energy + Delta-G solvation = -2615.984865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.69305 -36.91672 -35.05636 -32.55663 -32.13337 -30.17694 -29.66377 -27.29889 -25.52762 -23.80806 -22.41639 -20.90911 -20.59640 -18.46648 -17.24573 -16.45258 -15.81819 -15.12618 -14.95329 -14.61130 -13.91632 -13.67642 -13.55252 -13.37159 -12.75659 -12.54795 -12.42533 -12.39216 -11.82355 -11.56097 -11.25361 -11.13553 -10.81187 -10.74800 -10.29915 -10.06740 -9.90633 -9.46376 -8.99506 -8.77061 -8.04750 -7.40278 -6.84493 -6.27529 -4.29220 1.72941 2.17631 3.06495 3.15017 3.18808 3.49738 3.63124 4.18657 4.48308 4.95909 5.19702 5.30035 5.36664 5.42663 5.52642 5.60594 5.65252 5.90214 5.97200 6.04022 6.09136 6.28094 6.36887 6.41833 6.63316 6.69148 6.73832 6.95040 7.01284 7.13271 7.36821 7.42724 7.66839 7.76504 7.95498 8.00403 8.05858 8.34798 8.82128 9.31410 10.84949 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028759 B = 0.007451 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.386300 B = 3756.737717 C = 4001.363318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.482 5.482 3 C 0.164 3.836 4 C 0.072 3.928 5 H 0.038 0.962 6 C -0.511 4.511 7 H 0.081 0.919 8 C 0.076 3.924 9 N -0.888 5.888 10 Si 0.871 3.129 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.071 3.929 15 N -0.852 5.852 16 C -0.222 4.222 17 C -0.094 4.094 18 C -0.080 4.080 19 C -0.158 4.158 20 C -0.121 4.121 21 C -0.128 4.128 22 C 0.086 3.914 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.267 0.733 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.328 0.672 30 H 0.328 0.672 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -8.446 -8.047 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.165 5.165 3 C 0.057 3.943 4 C 0.052 3.948 5 H 0.056 0.944 6 C -0.549 4.549 7 H 0.099 0.901 8 C -0.127 4.127 9 N -0.525 5.525 10 Si 0.698 3.302 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.059 4.059 15 N -0.379 5.379 16 C -0.245 4.245 17 C -0.099 4.099 18 C -0.098 4.098 19 C -0.177 4.177 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.020 4.020 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.913 -8.963 -7.609 11.793 hybrid contribution -1.307 1.275 -0.630 1.932 sum -0.394 -7.688 -8.239 11.276 Atomic orbital electron populations 1.21845 0.78372 1.04172 1.01936 1.43757 1.05366 1.04164 1.63240 1.20763 0.89669 0.88400 0.95437 1.18027 0.94415 0.85476 0.96927 0.94440 1.20849 1.13376 1.27518 0.93181 0.90055 1.25056 0.97539 0.95131 0.94989 1.69875 1.33396 1.30670 1.18512 0.86975 0.82826 0.78420 0.81960 1.19953 1.21089 1.19231 1.22171 1.01027 0.96443 0.86284 1.58902 1.13176 1.61491 1.04370 1.21099 0.95543 0.91311 1.16562 1.19301 0.91868 0.94068 1.04694 1.20175 0.97620 0.92084 0.99954 1.20430 0.96057 0.95275 1.05940 1.20555 0.92392 0.98069 1.03043 1.19893 0.98826 0.89503 1.06646 1.18240 0.90585 0.88106 1.05048 0.92234 0.90909 0.89361 0.92281 0.91060 0.95617 0.86082 0.86130 0.84607 0.86833 0.87040 0.86813 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.57 59.85 0.63 1.96 16 2 N -0.48 -9.73 3.18 -117.19 -0.37 -10.10 16 3 C 0.16 3.58 5.49 -81.77 -0.45 3.13 16 4 C 0.07 1.60 1.50 -92.92 -0.14 1.46 16 5 H 0.04 0.83 4.51 -51.93 -0.23 0.60 16 6 C -0.51 -13.55 8.84 -34.44 -0.30 -13.85 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 8 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 10 Si 0.87 19.81 26.99 -169.99 -4.59 15.22 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -5.74 6.82 56.52 0.39 -5.36 16 14 C 0.07 1.44 5.83 -3.83 -0.02 1.41 16 15 N -0.85 -14.50 9.34 -10.37 -0.10 -14.60 16 16 C -0.22 -4.71 10.16 -37.67 -0.38 -5.09 16 17 C -0.09 -1.88 6.37 -105.13 -0.67 -2.55 16 18 C -0.08 -1.36 10.05 -39.65 -0.40 -1.76 16 19 C -0.16 -2.38 9.97 -39.94 -0.40 -2.78 16 20 C -0.12 -1.81 10.01 -39.54 -0.40 -2.20 16 21 C -0.13 -2.12 9.97 -39.43 -0.39 -2.51 16 22 C 0.09 1.69 6.81 -83.99 -0.57 1.11 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 1.05 8.11 -51.93 -0.42 0.62 16 25 H 0.09 1.62 7.40 -51.93 -0.38 1.24 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.07 1.44 6.91 -51.93 -0.36 1.08 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.33 5.36 8.99 -39.29 -0.35 5.01 16 30 H 0.33 4.70 9.08 -39.29 -0.36 4.34 16 31 H 0.14 2.76 7.14 -52.49 -0.37 2.39 16 32 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -29.81 292.58 -8.06 -37.87 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -4.59 Total: 11.89 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.59 Total: -19.72 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.30 Total: -49.67 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.59 Total: 15.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.81 -8.06 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.834 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds