Wall clock time and date at job start Mon Mar 30 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46490 * 126.49947 * 2 1 4 4 C 1.39637 * 134.03474 * 359.93886 * 3 2 1 5 5 C 1.36622 * 119.76484 * 180.02562 * 4 3 2 6 6 C 1.38835 * 120.53039 * 359.74186 * 5 4 3 7 7 C 1.37751 * 120.66143 * 0.52104 * 6 5 4 8 8 C 1.50703 * 120.11036 * 179.76457 * 7 6 5 9 9 C 1.39128 * 119.77831 * 359.48372 * 7 6 5 10 10 N 1.37686 * 133.49962 * 180.22639 * 9 7 6 11 11 H 0.96995 * 125.06874 * 0.03320 * 10 9 7 12 12 C 1.34236 * 126.50320 * 179.97438 * 2 1 3 13 13 C 1.50692 * 125.03672 * 0.03815 * 12 2 1 14 14 H 1.09002 * 109.47465 * 39.99393 * 13 12 2 15 15 N 1.46902 * 109.47437 * 159.99570 * 13 12 2 16 16 C 1.50705 * 109.47279 * 279.99730 * 13 12 2 17 17 H 1.07997 * 119.99424 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00127 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00064 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99649 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47367 * 60.00177 * 20 18 16 22 22 H 1.48499 * 109.46942 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47353 * 299.99948 * 20 18 16 24 24 H 1.08998 * 109.47064 * 90.02904 * 1 2 3 25 25 H 1.09005 * 109.46682 * 210.02191 * 1 2 3 26 26 H 1.08999 * 109.47068 * 330.02595 * 1 2 3 27 27 H 1.07999 * 120.11348 * 0.05292 * 4 3 2 28 28 H 1.07996 * 119.73594 * 180.02562 * 5 4 3 29 29 H 1.07993 * 119.67057 * 180.25953 * 6 5 4 30 30 H 1.09002 * 109.47152 * 269.72032 * 8 7 6 31 31 H 1.09001 * 109.46980 * 149.72132 * 8 7 6 32 32 H 1.09004 * 109.47113 * 29.72113 * 8 7 6 33 33 H 1.00896 * 111.00006 * 60.00385 * 15 13 12 34 34 H 1.00906 * 110.99975 * 183.95090 * 15 13 12 35 35 H 0.97002 * 119.99578 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1487 2.5549 -0.0011 5 6 3.2070 3.4190 -0.0012 6 6 4.5096 2.9387 0.0050 7 6 4.7589 1.5839 0.0008 8 6 6.1778 1.0763 0.0023 9 6 3.6962 0.6859 0.0009 10 7 3.6171 -0.6887 0.0014 11 1 4.3776 -1.2907 0.0021 12 6 2.3055 -1.0790 0.0005 13 6 1.8284 -2.5084 0.0003 14 1 0.9669 -2.6038 -0.6606 15 7 2.9080 -3.3851 -0.4729 16 6 1.4346 -2.9068 1.3994 17 1 1.5208 -2.1957 2.2077 18 6 0.9632 -4.1785 1.6472 19 7 0.8578 -5.0442 0.6628 20 14 0.4745 -4.6719 3.3813 21 1 -0.6168 -3.7855 3.8592 22 1 0.0044 -6.0805 3.3812 23 1 1.6479 -4.5423 4.2822 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 1.1381 2.9358 -0.0013 28 1 3.0288 4.4842 -0.0017 29 1 5.3358 3.6342 0.0091 30 1 6.5206 0.9528 -1.0250 31 1 6.2197 0.1164 0.5171 32 1 6.8193 1.7924 0.5159 33 1 3.7186 -3.3147 0.1238 34 1 2.5929 -4.3410 -0.5434 35 1 0.5265 -5.9390 0.8373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259548825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:16 Heat of formation + Delta-G solvation = 16.874885 kcal Electronic energy + Delta-G solvation = -17308.011783 eV Core-core repulsion = 14690.375143 eV Total energy + Delta-G solvation = -2617.636640 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16650 -38.32947 -36.19117 -34.46804 -33.23693 -32.21422 -29.90852 -28.21709 -27.53885 -27.08192 -24.45720 -22.69451 -21.24740 -19.71370 -18.66092 -18.50590 -16.97363 -16.70055 -16.18735 -15.61356 -15.51963 -15.07828 -14.74595 -14.27646 -14.12163 -13.69834 -13.53484 -13.39103 -13.27044 -13.05881 -12.98219 -12.83558 -12.66968 -12.26124 -12.16711 -11.92412 -11.77889 -11.48369 -10.77896 -10.10150 -9.39177 -8.89189 -8.34142 -8.09186 -6.42952 0.34021 0.85782 1.36299 1.38064 1.45685 1.92767 2.33489 2.42566 3.00768 3.07741 3.90106 3.99622 4.14234 4.31217 4.40998 4.51501 4.55011 4.67777 4.80684 4.81491 4.88851 4.97229 5.06810 5.09714 5.21152 5.33585 5.34376 5.44794 5.59160 5.75197 5.81723 5.90774 6.06015 6.16416 6.41678 6.57566 6.78635 6.85381 6.97055 7.32260 8.76967 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.006592 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.684277 B = 4246.607726 C = 4573.426094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.222 4.222 3 C -0.121 4.121 4 C -0.096 4.096 5 C -0.145 4.145 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.106 4.106 9 C 0.069 3.931 10 N -0.579 5.579 11 H 0.415 0.585 12 C 0.121 3.879 13 C 0.272 3.728 14 H 0.030 0.970 15 N -0.844 5.844 16 C -0.555 4.555 17 H 0.043 0.957 18 C 0.030 3.970 19 N -0.912 5.912 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.278 1.278 23 H -0.276 1.276 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.315 0.685 34 H 0.353 0.647 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 12.203 -0.615 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.229 4.229 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.164 4.164 6 C -0.133 4.133 7 C -0.110 4.110 8 C -0.163 4.163 9 C -0.038 4.038 10 N -0.181 5.181 11 H 0.253 0.747 12 C 0.011 3.989 13 C 0.161 3.839 14 H 0.048 0.952 15 N -0.373 5.373 16 C -0.595 4.595 17 H 0.061 0.939 18 C -0.172 4.172 19 N -0.551 5.551 20 Si 0.783 3.217 21 H -0.200 1.200 22 H -0.204 1.204 23 H -0.201 1.201 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.168 0.832 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.699 12.336 -1.350 14.102 hybrid contribution -0.383 -1.578 1.746 2.384 sum 6.316 10.758 0.396 12.482 Atomic orbital electron populations 1.19943 0.89423 1.01651 1.00971 1.20218 0.95936 0.90509 1.16236 1.19409 0.92201 0.94042 1.06983 1.20439 1.00217 0.90236 1.00591 1.20883 0.92011 1.00278 1.03274 1.21007 0.97808 0.93256 1.01198 1.19255 0.93821 0.92632 1.05318 1.20707 0.91510 1.01350 1.02718 1.18505 0.95885 0.83438 1.05977 1.41564 1.07096 1.04802 1.64632 0.74693 1.20740 0.82882 0.96385 0.98904 1.17468 0.90108 0.82939 0.93406 0.95248 1.59465 1.08321 1.14975 1.54531 1.21806 1.45216 0.97775 0.94703 0.93895 1.25643 0.94425 0.96288 1.00798 1.69800 1.46456 1.06162 1.32637 0.85623 0.78631 0.77291 0.80160 1.20016 1.20354 1.20099 0.92362 0.93172 0.91274 0.85442 0.83381 0.82972 0.90674 0.93006 0.89178 0.87570 0.83163 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.44 10.11 71.24 0.72 -1.72 16 2 C -0.22 -9.65 6.31 -18.63 -0.12 -9.77 16 3 C -0.12 -4.73 6.35 -20.20 -0.13 -4.86 16 4 C -0.10 -3.05 10.05 22.23 0.22 -2.83 16 5 C -0.15 -3.74 9.97 22.03 0.22 -3.52 16 6 C -0.11 -2.85 9.67 22.30 0.22 -2.64 16 7 C -0.11 -3.17 5.89 -19.76 -0.12 -3.29 16 8 C -0.11 -2.38 10.02 71.24 0.71 -1.67 16 9 C 0.07 2.57 6.95 39.03 0.27 2.85 16 10 N -0.58 -22.95 5.89 -175.92 -1.04 -23.99 16 11 H 0.42 14.88 7.88 -92.71 -0.73 14.15 16 12 C 0.12 5.51 6.00 40.86 0.25 5.75 16 13 C 0.27 13.63 2.60 43.42 0.11 13.74 16 14 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 15 N -0.84 -39.22 8.97 -174.95 -1.57 -40.79 16 16 C -0.56 -29.69 8.47 25.60 0.22 -29.48 16 17 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 18 C 0.03 1.55 5.38 84.65 0.46 2.01 16 19 N -0.91 -49.00 11.54 21.45 0.25 -48.75 16 20 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 2.16 7.59 -2.38 -0.02 2.14 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.21 7.99 -2.39 -0.02 1.19 16 32 H 0.09 1.56 8.08 -2.38 -0.02 1.54 16 33 H 0.32 13.63 8.10 -89.70 -0.73 12.90 16 34 H 0.35 17.57 7.08 -89.69 -0.63 16.93 16 35 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -59.55 294.51 1.73 -57.82 By element: Atomic # 1 Polarization: 47.72 SS G_CDS: -0.97 Total: 46.75 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.03 Total: -35.43 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -2.36 Total: -113.52 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -59.55 1.73 -57.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.696 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds