Wall clock time and date at job start Mon Mar 30 2020 07:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46910 * 110.99728 * 2 1 4 4 H 1.08996 * 109.47029 * 326.43755 * 3 2 1 5 5 C 1.50697 * 109.46813 * 206.43620 * 3 2 1 6 6 H 1.08009 * 119.99888 * 239.99728 * 5 3 2 7 7 C 1.37873 * 120.00456 * 60.00449 * 5 3 2 8 8 N 1.31515 * 119.99670 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00490 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47035 * 59.99581 * 9 7 5 11 11 H 1.48494 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46989 * 300.00123 * 9 7 5 13 13 C 1.50697 * 109.46862 * 86.43489 * 3 2 1 14 14 C 1.34231 * 126.50356 * 25.87677 * 13 3 2 15 15 N 1.36837 * 109.93128 * 179.97438 * 14 13 3 16 16 C 1.46503 * 125.06331 * 179.97438 * 15 14 13 17 17 C 1.37680 * 109.87125 * 359.97438 * 15 14 13 18 18 C 1.39127 * 133.50289 * 179.97438 * 17 15 14 19 19 C 1.37748 * 119.77829 * 180.02562 * 18 17 15 20 20 C 1.38825 * 120.66757 * 0.03217 * 19 18 17 21 21 C 1.36627 * 120.52625 * 0.22674 * 20 19 18 22 22 C 1.39629 * 119.76905 * 359.49669 * 21 20 19 23 23 H 1.09003 * 109.46777 * 184.83542 * 1 2 3 24 24 H 1.08998 * 109.47451 * 304.83240 * 1 2 3 25 25 H 1.08994 * 109.47309 * 64.84020 * 1 2 3 26 26 H 1.00894 * 111.00411 * 236.04557 * 2 1 3 27 27 H 0.97003 * 120.00089 * 180.02562 * 8 7 5 28 28 H 1.08000 * 125.04022 * 359.97438 * 14 13 3 29 29 H 1.08999 * 109.46825 * 269.99462 * 16 15 14 30 30 H 1.09004 * 109.47417 * 29.99590 * 16 15 14 31 31 H 1.08998 * 109.47083 * 149.99496 * 16 15 14 32 32 H 1.07997 * 120.11094 * 0.03324 * 18 17 15 33 33 H 1.08002 * 119.66706 * 180.02562 * 19 18 17 34 34 H 1.07998 * 119.74013 * 179.97438 * 20 19 18 35 35 H 1.08003 * 120.11662 * 179.74848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3261 2.0176 -0.5681 5 6 3.3631 1.3846 -0.6325 6 1 4.2176 1.7217 -0.0645 7 6 3.5237 0.9663 -1.9364 8 7 2.4833 0.5554 -2.6280 9 14 5.2190 0.9831 -2.7208 10 1 6.1312 0.1033 -1.9468 11 1 5.1229 0.4891 -4.1179 12 1 5.7506 2.3696 -2.7208 13 6 2.0928 1.8721 1.4181 14 6 2.2365 1.1216 2.5217 15 7 2.2886 1.9247 3.6284 16 6 2.4402 1.4503 5.0061 17 6 2.1775 3.2450 3.2541 18 6 2.1701 4.4434 3.9608 19 6 2.0389 5.6360 3.2840 20 6 1.9131 5.6554 1.9016 21 6 1.9126 4.4901 1.1883 22 6 2.0502 3.2701 1.8534 23 1 -0.3633 -1.0240 0.0866 24 1 -0.3634 0.5870 0.8435 25 1 -0.3633 0.4369 -0.9301 26 1 1.8306 -0.5261 -0.7813 27 1 2.5963 0.2607 -3.5453 28 1 2.3014 0.0437 2.5344 29 1 1.4559 1.2727 5.4395 30 1 3.0118 0.5222 5.0101 31 1 2.9655 2.2030 5.5939 32 1 2.2669 4.4387 5.0364 33 1 2.0337 6.5652 3.8344 34 1 1.8107 6.5989 1.3862 35 1 1.8102 4.5127 0.1134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259580536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:45 Heat of formation + Delta-G solvation = 62.711762 kcal Electronic energy + Delta-G solvation = -17418.463363 eV Core-core repulsion = 14802.814359 eV Total energy + Delta-G solvation = -2615.649004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.61268 -36.50275 -35.45925 -32.19901 -31.76373 -29.79523 -28.41858 -27.52609 -25.26767 -23.56004 -22.12285 -21.59929 -20.68775 -18.43036 -16.58437 -16.05451 -15.79402 -14.86845 -14.77213 -14.66077 -13.76434 -13.49576 -13.36291 -12.86842 -12.78593 -12.46552 -12.27219 -11.94151 -11.78984 -11.32248 -11.02589 -10.90953 -10.77938 -10.66368 -10.53212 -10.16159 -9.68452 -9.35359 -8.72303 -8.66272 -7.51340 -6.96412 -6.74478 -6.06630 -4.14142 1.76486 2.20545 3.31746 3.35710 3.38550 3.43002 3.61154 4.40475 4.56984 5.06030 5.15338 5.22443 5.40401 5.48941 5.57065 5.60948 5.70805 5.96873 6.13597 6.17672 6.38274 6.41038 6.53188 6.61689 6.74061 6.82302 6.94803 7.04982 7.23174 7.37187 7.50667 7.64656 7.88255 7.93708 8.00163 8.22686 8.73709 8.94317 9.17724 9.52455 10.97636 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.007872 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.490255 B = 3555.932877 C = 4003.917050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.690 5.690 3 C 0.276 3.724 4 H 0.011 0.989 5 C -0.500 4.500 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.106 4.106 14 C 0.039 3.961 15 N -0.499 5.499 16 C 0.087 3.913 17 C 0.091 3.909 18 C -0.141 4.141 19 C -0.110 4.110 20 C -0.166 4.166 21 C -0.055 4.055 22 C -0.099 4.099 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.012 0.988 26 H 0.361 0.639 27 H 0.265 0.735 28 H 0.167 0.833 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 3.590 11.196 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.324 5.324 3 C 0.167 3.833 4 H 0.029 0.971 5 C -0.539 4.539 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.113 4.113 14 C -0.082 4.082 15 N -0.185 5.185 16 C -0.055 4.055 17 C -0.015 4.015 18 C -0.162 4.162 19 C -0.129 4.129 20 C -0.186 4.186 21 C -0.073 4.073 22 C -0.105 4.105 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.183 0.817 27 H 0.074 0.926 28 H 0.184 0.816 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.675 3.252 11.999 12.544 hybrid contribution 0.701 0.218 -1.299 1.492 sum -0.973 3.471 10.700 11.291 Atomic orbital electron populations 1.21994 0.92035 0.98854 0.98521 1.60754 1.04099 1.16797 1.50762 1.17415 0.94776 0.86021 0.85059 0.97126 1.21209 0.93572 1.42618 0.96514 0.92218 1.25043 0.97078 0.94900 0.96917 1.69798 1.29293 1.44475 1.10552 0.86549 0.84289 0.78520 0.78046 1.20162 1.21330 1.20221 1.20984 1.04626 0.89204 0.96493 1.21555 1.06412 0.96364 0.83855 1.43758 1.64335 1.04110 1.06253 1.21736 1.01711 1.00663 0.81416 1.18263 1.04400 0.84746 0.94132 1.19817 1.08185 0.90027 0.98168 1.20602 1.01698 0.96230 0.94375 1.20483 1.06557 0.97563 0.93977 1.20384 0.96549 0.90625 0.99748 1.19296 1.05501 0.94103 0.91607 0.94127 0.94031 0.96990 0.81720 0.92556 0.81554 0.92268 0.90422 0.91084 0.87442 0.86813 0.86889 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.48 60.06 0.63 1.41 16 2 N -0.69 -16.51 6.11 -116.50 -0.71 -17.22 16 3 C 0.28 7.03 2.42 -70.01 -0.17 6.87 16 4 H 0.01 0.32 7.83 -51.93 -0.41 -0.09 16 5 C -0.50 -13.72 8.67 -34.44 -0.30 -14.02 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.06 1.68 5.11 -17.82 -0.09 1.59 16 8 N -0.90 -24.95 11.79 55.43 0.65 -24.29 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C -0.11 -2.45 5.14 -102.72 -0.53 -2.97 16 14 C 0.04 0.80 10.70 -16.73 -0.18 0.62 16 15 N -0.50 -8.81 3.18 -121.80 -0.39 -9.20 16 16 C 0.09 1.06 11.03 59.85 0.66 1.72 16 17 C 0.09 1.73 6.81 -83.99 -0.57 1.16 16 18 C -0.14 -2.28 9.97 -39.43 -0.39 -2.67 16 19 C -0.11 -1.68 10.01 -39.54 -0.40 -2.08 16 20 C -0.17 -2.77 9.97 -39.95 -0.40 -3.17 16 21 C -0.05 -1.08 10.05 -39.64 -0.40 -1.48 16 22 C -0.10 -2.14 6.35 -105.14 -0.67 -2.81 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.36 9.35 6.52 -39.30 -0.26 9.09 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.17 3.20 7.98 -52.49 -0.42 2.78 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -29.38 297.89 -8.62 -38.00 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.84 Total: 7.89 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.80 Total: -15.84 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.45 Total: -50.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.38 -8.62 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.707 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds