Wall clock time and date at job start Mon Mar 30 2020 05:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37789 * 120.11351 * 2 1 4 4 C 1.38792 * 120.66383 * 180.02562 * 3 2 1 5 5 C 1.36668 * 120.53063 * 359.97438 * 4 3 2 6 6 C 1.39593 * 119.76269 * 0.02562 * 5 4 3 7 7 C 1.46491 * 134.03377 * 179.97438 * 6 5 4 8 8 C 1.50690 * 126.50199 * 0.02562 * 7 6 5 9 9 H 1.08994 * 109.47682 * 39.99673 * 8 7 6 10 10 N 1.46901 * 109.47237 * 160.00146 * 8 7 6 11 11 C 1.50705 * 109.46898 * 279.99510 * 8 7 6 12 12 H 1.07997 * 119.99812 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99996 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99946 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 119.99932 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47177 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47304 * 120.00056 * 15 13 11 18 18 H 1.48504 * 109.47196 * 239.99587 * 15 13 11 19 19 C 1.34242 * 106.99467 * 180.02562 * 7 6 5 20 20 N 1.36833 * 109.94036 * 0.02562 * 19 7 6 21 21 C 1.46499 * 125.06296 * 179.97438 * 20 19 7 22 22 C 1.37692 * 109.87406 * 0.22279 * 20 19 7 23 23 H 1.09001 * 109.47054 * 89.99618 * 1 2 3 24 24 H 1.08993 * 109.47536 * 210.00056 * 1 2 3 25 25 H 1.09004 * 109.46514 * 330.00274 * 1 2 3 26 26 H 1.07993 * 119.66713 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.73146 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.11304 * 179.97438 * 5 4 3 29 29 H 1.00896 * 111.00486 * 59.99463 * 10 8 7 30 30 H 1.00903 * 111.00024 * 183.95419 * 10 8 7 31 31 H 0.96999 * 119.99892 * 179.97438 * 14 13 11 32 32 H 1.07995 * 125.02584 * 179.97438 * 19 7 6 33 33 H 1.09002 * 109.47391 * 90.01941 * 21 20 19 34 34 H 1.09001 * 109.46813 * 330.01997 * 21 20 19 35 35 H 1.09004 * 109.47041 * 210.02124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0005 5 6 4.2917 0.0348 -0.0005 6 6 3.6116 -1.1843 -0.0006 7 6 4.0353 -2.5866 -0.0010 8 6 5.4540 -3.0944 -0.0012 9 1 6.0614 -2.4759 0.6595 10 7 5.4765 -4.4849 0.4720 11 6 6.0101 -3.0309 -1.4004 12 1 5.3975 -2.6596 -2.2086 13 6 7.3010 -3.4469 -1.6488 14 7 8.0472 -3.8986 -0.6645 15 14 7.9905 -3.3676 -3.3831 16 1 6.9578 -2.8251 -4.3020 17 1 9.1837 -2.4838 -3.4015 18 1 8.3780 -4.7316 -3.8246 19 6 2.9198 -3.3335 -0.0013 20 7 1.8164 -2.5242 -0.0017 21 6 0.4286 -2.9935 -0.0026 22 6 2.2047 -1.2032 -0.0066 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3632 0.8901 0.5138 26 1 1.6547 2.1251 -0.0004 27 1 4.1127 2.1482 -0.0001 28 1 5.3716 0.0530 -0.0014 29 1 4.9202 -5.0789 -0.1244 30 1 6.4229 -4.8276 0.5424 31 1 8.9552 -4.1916 -0.8393 32 1 2.8968 -4.4132 -0.0021 33 1 0.0837 -3.1099 1.0248 34 1 0.3699 -3.9530 -0.5165 35 1 -0.2004 -2.2668 -0.5169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259583890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:04 Heat of formation + Delta-G solvation = 55.192744 kcal Electronic energy + Delta-G solvation = -17364.696501 eV Core-core repulsion = 14748.721448 eV Total energy + Delta-G solvation = -2615.975053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75172 -36.68857 -34.96938 -33.04511 -31.27429 -30.30989 -28.07264 -27.34679 -25.93221 -24.80411 -22.22962 -21.24958 -20.90319 -18.01264 -16.41415 -16.17751 -15.80043 -14.92684 -14.86016 -14.55251 -14.07471 -13.50406 -13.26715 -12.95744 -12.82734 -12.71223 -12.48176 -12.15916 -11.85246 -11.38963 -11.15672 -10.92514 -10.83187 -10.61355 -10.56999 -10.27184 -9.94607 -9.59178 -8.75965 -8.49108 -7.52341 -7.18622 -6.72129 -5.98432 -4.15675 1.72050 2.20619 3.25358 3.33919 3.37780 3.40557 3.55109 4.38542 4.53331 5.01729 5.10971 5.19462 5.25145 5.34968 5.45607 5.52863 5.59552 5.64853 5.71557 5.91422 6.06858 6.15692 6.30100 6.47959 6.58695 6.74609 6.94344 7.04615 7.22496 7.45758 7.46171 7.79033 7.83780 7.90570 8.07045 8.23126 8.78755 9.03114 9.18745 9.55495 10.96774 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.007166 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.682756 B = 3906.562642 C = 4407.705401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.163 4.163 5 C -0.055 4.055 6 C -0.096 4.096 7 C -0.099 4.099 8 C 0.272 3.728 9 H 0.045 0.955 10 N -0.851 5.851 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.064 3.936 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.285 1.285 19 C 0.022 3.978 20 N -0.494 5.494 21 C 0.079 3.921 22 C 0.097 3.903 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.308 0.692 30 H 0.355 0.645 31 H 0.263 0.737 32 H 0.161 0.839 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.274 4.550 1.260 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.115 4.115 3 C -0.128 4.128 4 C -0.183 4.183 5 C -0.074 4.074 6 C -0.101 4.101 7 C -0.106 4.106 8 C 0.161 3.839 9 H 0.063 0.937 10 N -0.380 5.380 11 C -0.573 4.573 12 H 0.073 0.927 13 C -0.138 4.138 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.211 1.211 19 C -0.099 4.099 20 N -0.180 5.180 21 C -0.063 4.063 22 C -0.009 4.009 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.171 0.829 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.737 4.592 1.985 14.619 hybrid contribution 0.910 -0.223 -1.999 2.208 sum -12.827 4.370 -0.014 13.550 Atomic orbital electron populations 1.20836 0.92332 1.02179 1.01426 1.18670 0.94603 0.90445 1.07809 1.20504 0.94127 0.95743 1.02435 1.20474 0.93813 0.97554 1.06456 1.20389 0.99916 0.90520 0.96538 1.19203 0.91331 0.93930 1.05667 1.20976 0.96349 0.89657 1.03619 1.17347 0.85245 0.87527 0.93751 0.93711 1.59474 1.19222 1.04434 1.54840 1.21909 0.97987 1.42443 0.94968 0.92705 1.25016 0.96626 0.95022 0.97122 1.69752 1.09240 1.43756 1.30918 0.86520 0.78974 0.77619 0.84792 1.19823 1.20908 1.21084 1.21400 0.84215 0.95952 1.08334 1.43602 1.05538 1.03779 1.65041 1.21978 0.81421 1.00868 1.02048 1.18061 0.93710 0.84320 1.04840 0.92089 0.92009 0.91913 0.86813 0.86810 0.85899 0.88348 0.82856 0.92672 0.82158 0.92200 0.90640 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.80 36.00 0.32 -1.01 16 2 C -0.11 -1.82 5.89 -104.47 -0.62 -2.43 16 3 C -0.11 -1.69 9.67 -39.54 -0.38 -2.07 16 4 C -0.16 -2.75 9.97 -39.94 -0.40 -3.15 16 5 C -0.06 -1.11 10.05 -39.64 -0.40 -1.50 16 6 C -0.10 -2.07 6.35 -105.14 -0.67 -2.74 16 7 C -0.10 -2.28 5.41 -102.71 -0.56 -2.84 16 8 C 0.27 6.96 3.23 -70.02 -0.23 6.73 16 9 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 10 N -0.85 -20.38 8.88 -6.65 -0.06 -20.44 16 11 C -0.53 -14.64 8.71 -34.44 -0.30 -14.94 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.74 5.38 -17.82 -0.10 1.64 16 14 N -0.90 -24.98 11.54 55.43 0.64 -24.34 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.02 0.44 10.54 -16.73 -0.18 0.26 16 20 N -0.49 -8.64 3.18 -121.80 -0.39 -9.02 16 21 C 0.08 0.96 9.76 59.85 0.58 1.54 16 22 C 0.10 1.85 6.74 -83.99 -0.57 1.28 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.68 5.51 -51.93 -0.29 0.39 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 29 H 0.31 6.92 8.00 -39.29 -0.31 6.60 16 30 H 0.36 9.12 7.08 -39.29 -0.28 8.84 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.16 2.87 7.31 -52.49 -0.38 2.49 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.84 5.68 -51.93 -0.30 0.55 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -29.93 289.41 -8.43 -38.36 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.48 Total: 13.99 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.48 Total: -19.23 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.19 Total: -53.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.93 -8.43 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.553 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds