Wall clock time and date at job start Mon Mar 30 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36855 * 125.06222 * 2 1 4 4 H 0.96996 * 125.07423 * 0.02562 * 3 2 1 5 5 C 1.37702 * 109.85469 * 180.02562 * 3 2 1 6 6 C 1.39218 * 133.35607 * 180.02562 * 5 3 2 7 7 C 1.37868 * 120.11758 * 179.97438 * 6 5 3 8 8 C 1.38598 * 120.77580 * 359.97438 * 7 6 5 9 9 C 1.38617 * 120.26304 * 0.02897 * 8 7 6 10 10 N 1.38964 * 120.26088 * 180.02562 * 9 8 7 11 11 C 1.46496 * 120.00339 * 89.97654 * 10 9 8 12 12 C 1.36832 * 119.99726 * 269.97689 * 10 9 8 13 13 H 1.07994 * 120.00340 * 19.20961 * 12 10 9 14 14 C 1.38736 * 119.99821 * 199.20455 * 12 10 9 15 15 N 1.31630 * 119.99789 * 15.40418 * 14 12 10 16 16 Si 1.86799 * 119.99769 * 195.39651 * 14 12 10 17 17 H 1.48498 * 109.47024 * 60.00660 * 16 14 12 18 18 H 1.48509 * 109.46867 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47450 * 300.00189 * 16 14 12 20 20 C 1.40423 * 119.47306 * 359.97438 * 9 8 7 21 21 C 1.34333 * 125.07140 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.50380 * 359.72258 * 21 2 1 23 23 H 1.09004 * 109.47224 * 269.97245 * 1 2 3 24 24 H 1.08994 * 109.47429 * 29.97790 * 1 2 3 25 25 H 1.09001 * 109.46782 * 149.97304 * 1 2 3 26 26 H 1.08000 * 119.94169 * 359.95422 * 6 5 3 27 27 H 1.08003 * 119.60858 * 179.97438 * 7 6 5 28 28 H 1.07991 * 119.86544 * 180.02562 * 8 7 6 29 29 H 1.09000 * 109.47080 * 95.14893 * 11 10 9 30 30 H 1.08996 * 109.47586 * 215.15149 * 11 10 9 31 31 H 1.08998 * 109.47057 * 335.14943 * 11 10 9 32 32 H 0.97004 * 119.99586 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.47193 * 90.02089 * 22 21 2 34 34 H 1.08992 * 109.46975 * 210.01786 * 22 21 2 35 35 H 1.09003 * 109.47055 * 330.02235 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2932 1.1202 0.0000 4 1 1.9636 2.0325 0.0004 5 6 3.6220 0.7590 -0.0006 6 6 4.8098 1.4851 -0.0004 7 6 6.0221 0.8284 -0.0006 8 6 6.0784 -0.5565 -0.0005 9 6 4.9105 -1.3031 -0.0008 10 7 4.9671 -2.6916 -0.0001 11 6 4.9967 -3.4230 1.2689 12 6 4.9950 -3.3757 -1.1848 13 1 5.2825 -2.8692 -2.0943 14 6 4.6542 -4.7202 -1.2177 15 7 4.0216 -5.2638 -0.1995 16 14 5.0931 -5.7587 -2.7071 17 1 6.5661 -5.7574 -2.8947 18 1 4.6217 -7.1511 -2.4958 19 1 4.4397 -5.1934 -3.9147 20 6 3.6699 -0.6453 -0.0006 21 6 2.2789 -1.0994 -0.0005 22 6 1.8026 -2.5292 0.0047 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 4.7817 2.5647 -0.0004 27 1 6.9385 1.3998 -0.0009 28 1 7.0360 -1.0557 -0.0002 29 1 3.9847 -3.7259 1.5374 30 1 5.6249 -4.3076 1.1639 31 1 5.4027 -2.7797 2.0495 32 1 3.7829 -6.2037 -0.2226 33 1 1.6840 -2.8765 -1.0217 34 1 2.5339 -3.1539 0.5174 35 1 0.8452 -2.5914 0.5222 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259629908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:55 Heat of formation + Delta-G solvation = 78.472753 kcal Electronic energy + Delta-G solvation = -17793.915935 eV Core-core repulsion = 15178.950379 eV Total energy + Delta-G solvation = -2614.965556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61517 -36.94891 -34.99528 -32.17869 -31.05570 -30.30187 -28.27890 -27.07975 -25.82501 -24.98668 -22.89465 -21.04759 -20.23456 -18.32228 -17.18621 -16.23347 -15.62989 -14.78613 -14.44274 -14.35381 -13.70677 -13.56440 -13.06015 -12.68715 -12.46335 -12.28427 -11.90817 -11.69884 -11.65781 -11.17855 -11.00195 -10.98429 -10.65477 -10.57490 -10.35003 -10.11511 -9.99377 -9.77547 -8.55621 -8.45249 -7.44297 -6.88625 -6.66838 -5.71356 -3.15899 1.86689 2.39983 3.32676 3.42599 3.47192 3.49590 3.65652 4.51806 4.70772 5.23834 5.34968 5.46017 5.48886 5.57220 5.74020 5.77066 5.98833 6.05188 6.10214 6.17974 6.44431 6.54556 6.71407 6.79856 6.87745 6.93796 7.19631 7.28949 7.36068 7.40281 7.57382 7.69360 7.81500 7.92634 7.98410 8.18080 8.49806 9.26154 9.97086 10.35900 11.33863 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.009151 C = 0.007407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.699202 B = 3058.929682 C = 3779.234491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.026 3.974 3 N -0.602 5.602 4 H 0.403 0.597 5 C 0.102 3.898 6 C -0.171 4.171 7 C -0.087 4.087 8 C -0.184 4.184 9 C 0.269 3.731 10 N -0.566 5.566 11 C 0.166 3.834 12 C -0.246 4.246 13 H 0.069 0.931 14 C 0.008 3.992 15 N -0.903 5.903 16 Si 0.904 3.096 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.284 1.284 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.079 4.079 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.037 0.963 30 H 0.049 0.951 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 10.556 1.949 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 N -0.207 5.207 4 H 0.239 0.761 5 C -0.006 4.006 6 C -0.192 4.192 7 C -0.107 4.107 8 C -0.206 4.206 9 C 0.174 3.826 10 N -0.285 5.285 11 C 0.023 3.977 12 C -0.374 4.374 13 H 0.086 0.914 14 C -0.190 4.190 15 N -0.548 5.548 16 Si 0.734 3.266 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.136 4.136 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.903 10.384 1.986 11.270 hybrid contribution 0.037 -0.021 -0.912 0.913 sum -3.867 10.364 1.074 11.114 Atomic orbital electron populations 1.20288 0.88685 1.02743 1.02100 1.19944 0.92688 0.85811 1.09451 1.41493 1.04050 1.07253 1.67893 0.76137 1.18200 0.84186 0.94197 1.03979 1.19703 0.89878 0.97746 1.11908 1.20551 0.95896 0.94236 1.00009 1.21446 0.98505 0.93135 1.07521 1.17252 0.89101 0.86377 0.89896 1.41305 1.85551 0.97729 1.03959 1.20890 1.00067 0.93438 0.83336 1.19031 1.39468 0.92189 0.86713 0.91356 1.24845 0.98745 0.97896 0.97559 1.70060 1.41359 1.12378 1.30977 0.86346 0.78308 0.79462 0.82507 1.21148 1.21645 1.21051 1.20032 0.94329 0.91180 1.07121 1.20245 0.90650 0.94832 1.06920 1.20257 1.00072 0.91268 1.01991 0.91495 0.92344 0.90198 0.87665 0.86890 0.86576 0.94520 0.93226 0.98256 0.93664 0.92451 0.87683 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.99 36.01 0.36 -0.67 16 2 C 0.03 0.45 7.09 -81.73 -0.58 -0.13 16 3 N -0.60 -9.74 6.07 -6.94 -0.04 -9.78 16 4 H 0.40 4.95 8.96 -40.82 -0.37 4.58 16 5 C 0.10 1.94 7.27 -84.01 -0.61 1.33 16 6 C -0.17 -2.92 10.07 -39.35 -0.40 -3.32 16 7 C -0.09 -1.52 10.00 -39.58 -0.40 -1.91 16 8 C -0.18 -3.81 9.96 -39.31 -0.39 -4.20 16 9 C 0.27 6.32 5.03 -83.67 -0.42 5.90 16 10 N -0.57 -14.51 2.09 -120.36 -0.25 -14.76 16 11 C 0.17 4.12 8.65 59.84 0.52 4.64 16 12 C -0.25 -6.76 9.65 -15.14 -0.15 -6.91 16 13 H 0.07 1.92 7.87 -52.49 -0.41 1.50 16 14 C 0.01 0.21 5.06 -17.45 -0.09 0.12 16 15 N -0.90 -24.92 10.32 55.49 0.57 -24.35 16 16 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C -0.12 -2.68 6.29 -104.97 -0.66 -3.34 16 21 C -0.12 -2.52 6.31 -102.75 -0.65 -3.17 16 22 C -0.08 -1.71 9.74 36.01 0.35 -1.36 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.01 7.68 -51.93 -0.40 0.62 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 29 H 0.04 0.96 5.69 -51.93 -0.30 0.66 16 30 H 0.05 1.29 7.15 -51.93 -0.37 0.92 16 31 H 0.00 -0.03 8.01 -51.93 -0.42 -0.44 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 2.61 4.97 -51.93 -0.26 2.35 16 35 H 0.04 0.67 7.71 -51.93 -0.40 0.27 16 LS Contribution 289.43 15.07 4.36 4.36 Total: -1.00 -29.71 289.43 -8.09 -37.80 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.59 Total: 3.01 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -3.11 Total: -13.01 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.28 Total: -48.89 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.71 -8.09 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.271 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds