Wall clock time and date at job start Mon Mar 30 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37784 * 120.10899 * 2 1 4 4 C 1.38790 * 120.66423 * 180.02562 * 3 2 1 5 5 C 1.36658 * 120.52828 * 0.02562 * 4 3 2 6 6 C 1.39583 * 119.76682 * 359.97438 * 5 4 3 7 7 C 1.46496 * 134.03765 * 179.97438 * 6 5 4 8 8 C 1.34236 * 106.99728 * 180.02562 * 7 6 5 9 9 C 1.50707 * 125.02857 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46777 * 154.94624 * 9 8 7 11 11 N 1.46892 * 109.46999 * 34.94530 * 9 8 7 12 12 C 1.50700 * 109.47017 * 274.94589 * 9 8 7 13 13 H 1.08007 * 120.00035 * 5.46455 * 12 9 8 14 14 C 1.37873 * 120.00136 * 185.46726 * 12 9 8 15 15 N 1.31514 * 120.00237 * 185.53451 * 14 12 9 16 16 Si 1.86796 * 119.99766 * 5.53147 * 14 12 9 17 17 H 1.48502 * 109.47272 * 94.97541 * 16 14 12 18 18 H 1.48506 * 109.47434 * 214.97363 * 16 14 12 19 19 H 1.48503 * 109.47361 * 334.97489 * 16 14 12 20 20 N 1.36835 * 109.94084 * 359.97438 * 8 7 6 21 21 C 1.46500 * 125.06359 * 179.97438 * 20 8 7 22 22 C 1.37692 * 109.87409 * 0.02562 * 20 8 7 23 23 H 1.08999 * 109.47235 * 269.97353 * 1 2 3 24 24 H 1.08996 * 109.47237 * 29.97018 * 1 2 3 25 25 H 1.09002 * 109.47478 * 149.97521 * 1 2 3 26 26 H 1.08004 * 119.66956 * 0.02993 * 3 2 1 27 27 H 1.08003 * 119.73450 * 180.27467 * 4 3 2 28 28 H 1.08008 * 120.11712 * 180.02562 * 5 4 3 29 29 H 1.07995 * 126.49791 * 359.96546 * 7 6 5 30 30 H 1.00901 * 111.00085 * 294.99927 * 11 9 8 31 31 H 1.00902 * 111.00173 * 58.95337 * 11 9 8 32 32 H 0.97003 * 120.00236 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.47114 * 264.28756 * 21 20 8 34 34 H 1.09005 * 109.46796 * 24.28474 * 21 20 8 35 35 H 1.09003 * 109.47351 * 144.27992 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1919 0.0000 4 6 3.5860 1.2054 -0.0005 5 6 4.2916 0.0350 -0.0016 6 6 3.6117 -1.1840 -0.0016 7 6 4.0354 -2.5864 -0.0030 8 6 2.9201 -3.3333 -0.0028 9 6 2.8880 -4.8400 -0.0034 10 1 1.9497 -5.1836 0.4321 11 7 4.0129 -5.3540 0.7891 12 6 2.9991 -5.3442 -1.4192 13 1 3.1729 -4.6496 -2.2278 14 6 2.8788 -6.6923 -1.6824 15 7 3.0835 -7.1454 -2.8999 16 14 2.4253 -7.8750 -0.3095 17 1 0.9579 -8.1032 -0.3173 18 1 3.1282 -9.1667 -0.5165 19 1 2.8291 -7.2955 0.9968 20 7 1.8165 -2.5242 -0.0008 21 6 0.4288 -2.9936 -0.0005 22 6 2.2047 -1.2031 -0.0002 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6546 2.1252 0.0005 27 1 4.1126 2.1483 0.0040 28 1 5.3715 0.0532 -0.0016 29 1 5.0522 -2.9501 -0.0050 30 1 4.8952 -5.1177 0.3603 31 1 3.9705 -5.0159 1.7389 32 1 2.9992 -8.0939 -3.0850 33 1 0.0511 -3.0115 -1.0228 34 1 0.3851 -3.9980 0.4207 35 1 -0.1823 -2.3206 0.6010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259687099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:07 Heat of formation + Delta-G solvation = 60.162004 kcal Electronic energy + Delta-G solvation = -17433.564888 eV Core-core repulsion = 14817.805318 eV Total energy + Delta-G solvation = -2615.759570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.97427 -37.15289 -34.58355 -33.40554 -31.83481 -30.76454 -28.23025 -27.36126 -26.33510 -24.99248 -22.74942 -21.29950 -20.16583 -18.74156 -17.05858 -16.41338 -15.77540 -15.04962 -14.91877 -14.54734 -14.15482 -13.80036 -13.39373 -13.25517 -13.06086 -12.71803 -12.46536 -12.29976 -12.16083 -11.84903 -11.39512 -11.04582 -10.92273 -10.78741 -10.51513 -10.24298 -9.88624 -9.40530 -9.00226 -8.62121 -7.73851 -7.54286 -7.01696 -6.11765 -4.22245 1.51841 2.01902 3.28644 3.36823 3.37843 3.48390 3.71976 4.26303 4.54155 4.97657 5.13311 5.14852 5.16884 5.27952 5.43429 5.47688 5.50995 5.66267 5.75216 5.82132 5.86229 5.96685 5.99839 6.15235 6.24697 6.46592 6.50464 6.66810 6.87087 6.95187 7.22643 7.31557 7.49633 7.74273 7.85713 8.12078 8.25013 8.62454 8.91095 9.50417 10.98053 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.006797 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.174035 B = 4118.367816 C = 4459.305090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.151 4.151 5 C -0.083 4.083 6 C -0.095 4.095 7 C -0.233 4.233 8 C 0.112 3.888 9 C 0.243 3.757 10 H 0.045 0.955 11 N -0.828 5.828 12 C -0.521 4.521 13 H 0.072 0.928 14 C 0.090 3.910 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.295 1.295 18 H -0.294 1.294 19 H -0.222 1.222 20 N -0.477 5.477 21 C 0.076 3.924 22 C 0.089 3.911 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.337 0.663 31 H 0.310 0.690 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 12.377 7.982 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.171 4.171 5 C -0.102 4.102 6 C -0.100 4.100 7 C -0.257 4.257 8 C 0.002 3.998 9 C 0.132 3.868 10 H 0.062 0.938 11 N -0.357 5.357 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.115 4.115 15 N -0.528 5.528 16 Si 0.705 3.295 17 H -0.222 1.222 18 H -0.220 1.220 19 H -0.144 1.144 20 N -0.159 5.159 21 C -0.066 4.066 22 C -0.017 4.017 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.234 11.330 7.728 14.353 hybrid contribution 0.055 0.338 0.416 0.539 sum -4.179 11.667 8.144 14.829 Atomic orbital electron populations 1.20883 0.91996 1.02689 1.01675 1.18780 0.94960 0.90361 1.05640 1.20504 0.94080 0.95886 1.03403 1.20447 0.93942 0.97388 1.05275 1.20174 0.99022 0.90698 1.00274 1.19246 0.91960 0.93792 1.05019 1.21207 0.97694 0.89810 1.17027 1.22273 0.84798 0.95941 0.96808 1.18282 0.91985 0.80805 0.95732 0.93765 1.59882 1.06486 1.65039 1.04262 1.20674 1.52387 0.93475 0.89412 0.90976 1.24947 0.92873 0.98191 0.95536 1.69946 1.47506 1.14742 1.20613 0.86817 0.76919 0.79616 0.86112 1.22198 1.22038 1.14390 1.43803 1.06159 1.03424 1.62562 1.22041 0.80397 1.01230 1.02902 1.18112 0.93687 0.84498 1.05391 0.91830 0.91704 0.91595 0.86604 0.86792 0.86703 0.84375 0.84927 0.87900 0.92541 0.91221 0.89624 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.84 36.01 0.32 -1.09 16 2 C -0.09 -1.48 5.89 -104.47 -0.62 -2.09 16 3 C -0.12 -1.69 9.67 -39.54 -0.38 -2.08 16 4 C -0.15 -2.16 9.97 -39.95 -0.40 -2.56 16 5 C -0.08 -1.35 10.05 -39.65 -0.40 -1.75 16 6 C -0.10 -1.81 6.37 -105.14 -0.67 -2.48 16 7 C -0.23 -4.68 10.36 -37.67 -0.39 -5.07 16 8 C 0.11 2.32 5.79 -81.77 -0.47 1.85 16 9 C 0.24 5.41 2.27 -70.02 -0.16 5.25 16 10 H 0.04 0.99 5.63 -51.93 -0.29 0.70 16 11 N -0.83 -16.81 6.71 -6.65 -0.04 -16.86 16 12 C -0.52 -14.16 9.18 -34.44 -0.32 -14.47 16 13 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 14 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 15 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 16 Si 0.88 21.14 26.85 -169.99 -4.56 16.57 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.22 -5.03 5.74 56.52 0.32 -4.71 16 20 N -0.48 -9.03 3.18 -117.19 -0.37 -9.41 16 21 C 0.08 1.18 9.38 59.85 0.56 1.74 16 22 C 0.09 1.65 6.74 -83.99 -0.57 1.09 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.07 0.81 5.55 -51.93 -0.29 0.52 16 26 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 27 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.14 2.60 7.51 -52.49 -0.39 2.20 16 30 H 0.34 6.72 8.13 -39.29 -0.32 6.40 16 31 H 0.31 5.49 9.02 -39.29 -0.35 5.14 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.07 1.06 8.07 -51.93 -0.42 0.65 16 34 H 0.09 1.31 6.63 -51.93 -0.34 0.97 16 35 H 0.07 0.93 6.14 -51.93 -0.32 0.61 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -31.30 284.04 -7.99 -39.29 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.47 Total: 11.41 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -3.59 Total: -19.25 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.36 Total: -52.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.56 Total: 16.57 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.30 -7.99 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.450 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds