Wall clock time and date at job start Mon Mar 30 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37784 * 120.10899 * 2 1 4 4 C 1.38790 * 120.66423 * 180.02562 * 3 2 1 5 5 C 1.36658 * 120.52828 * 0.02562 * 4 3 2 6 6 C 1.39583 * 119.76682 * 359.97438 * 5 4 3 7 7 C 1.46496 * 134.03765 * 179.97438 * 6 5 4 8 8 C 1.34236 * 106.99728 * 180.02562 * 7 6 5 9 9 C 1.50707 * 125.02857 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46777 * 154.94624 * 9 8 7 11 11 N 1.46892 * 109.46999 * 34.94530 * 9 8 7 12 12 C 1.50700 * 109.47017 * 274.94589 * 9 8 7 13 13 H 1.08007 * 120.00035 * 5.46455 * 12 9 8 14 14 C 1.37873 * 120.00136 * 185.46726 * 12 9 8 15 15 N 1.31514 * 120.00237 * 185.53451 * 14 12 9 16 16 Si 1.86796 * 119.99766 * 5.53147 * 14 12 9 17 17 H 1.48502 * 109.47272 * 94.97541 * 16 14 12 18 18 H 1.48506 * 109.47434 * 214.97363 * 16 14 12 19 19 H 1.48503 * 109.47361 * 334.97489 * 16 14 12 20 20 N 1.36835 * 109.94084 * 359.97438 * 8 7 6 21 21 C 1.46500 * 125.06359 * 179.97438 * 20 8 7 22 22 C 1.37692 * 109.87409 * 0.02562 * 20 8 7 23 23 H 1.08999 * 109.47235 * 269.97353 * 1 2 3 24 24 H 1.08996 * 109.47237 * 29.97018 * 1 2 3 25 25 H 1.09002 * 109.47478 * 149.97521 * 1 2 3 26 26 H 1.08004 * 119.66956 * 0.02993 * 3 2 1 27 27 H 1.08003 * 119.73450 * 180.27467 * 4 3 2 28 28 H 1.08008 * 120.11712 * 180.02562 * 5 4 3 29 29 H 1.07995 * 126.49791 * 359.96546 * 7 6 5 30 30 H 1.00901 * 111.00085 * 294.99927 * 11 9 8 31 31 H 1.00902 * 111.00173 * 58.95337 * 11 9 8 32 32 H 0.97003 * 120.00236 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.47114 * 264.28756 * 21 20 8 34 34 H 1.09005 * 109.46796 * 24.28474 * 21 20 8 35 35 H 1.09003 * 109.47351 * 144.27992 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1919 0.0000 4 6 3.5860 1.2054 -0.0005 5 6 4.2916 0.0350 -0.0016 6 6 3.6117 -1.1840 -0.0016 7 6 4.0354 -2.5864 -0.0030 8 6 2.9201 -3.3333 -0.0028 9 6 2.8880 -4.8400 -0.0034 10 1 1.9497 -5.1836 0.4321 11 7 4.0129 -5.3540 0.7891 12 6 2.9991 -5.3442 -1.4192 13 1 3.1729 -4.6496 -2.2278 14 6 2.8788 -6.6923 -1.6824 15 7 3.0835 -7.1454 -2.8999 16 14 2.4253 -7.8750 -0.3095 17 1 0.9579 -8.1032 -0.3173 18 1 3.1282 -9.1667 -0.5165 19 1 2.8291 -7.2955 0.9968 20 7 1.8165 -2.5242 -0.0008 21 6 0.4288 -2.9936 -0.0005 22 6 2.2047 -1.2031 -0.0002 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6546 2.1252 0.0005 27 1 4.1126 2.1483 0.0040 28 1 5.3715 0.0532 -0.0016 29 1 5.0522 -2.9501 -0.0050 30 1 4.8952 -5.1177 0.3603 31 1 3.9705 -5.0159 1.7389 32 1 2.9992 -8.0939 -3.0850 33 1 0.0511 -3.0115 -1.0228 34 1 0.3851 -3.9980 0.4207 35 1 -0.1823 -2.3206 0.6010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259687099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:06 Heat of formation + Delta-G solvation = 39.782957 kcal Electronic energy + Delta-G solvation = -17434.448590 eV Core-core repulsion = 14817.805318 eV Total energy + Delta-G solvation = -2616.643272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.31751 -38.45929 -36.27026 -34.69678 -33.84343 -31.98919 -29.63817 -28.58041 -28.19565 -26.19258 -24.45439 -22.57306 -21.52261 -20.24931 -19.07928 -17.70447 -17.21147 -16.70964 -16.22954 -15.97167 -15.86596 -15.19050 -14.82314 -14.52264 -14.31643 -14.26972 -13.95826 -13.53340 -13.35794 -13.33023 -12.89265 -12.73859 -12.49360 -12.07128 -11.88659 -11.71997 -11.62569 -11.46139 -10.76503 -10.29688 -9.39778 -8.90674 -8.37559 -8.28439 -6.43548 0.26403 0.78353 1.45259 1.52157 1.80762 1.82721 2.02986 2.51277 3.01941 3.07738 3.81700 3.88637 3.97723 4.04427 4.14686 4.21796 4.37605 4.46715 4.56551 4.62150 4.69272 4.76475 4.79244 4.84116 5.03881 5.11244 5.17596 5.31493 5.42232 5.67514 5.74042 5.95076 6.02584 6.08672 6.36540 6.42562 6.55123 6.70128 6.96481 7.32808 8.84998 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.006797 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.174035 B = 4118.367816 C = 4459.305090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.114 4.114 4 C -0.145 4.145 5 C -0.099 4.099 6 C -0.130 4.130 7 C -0.244 4.244 8 C 0.083 3.917 9 C 0.255 3.745 10 H 0.050 0.950 11 N -0.828 5.828 12 C -0.518 4.518 13 H 0.019 0.981 14 C 0.034 3.966 15 N -0.944 5.944 16 Si 0.949 3.051 17 H -0.289 1.289 18 H -0.301 1.301 19 H -0.197 1.197 20 N -0.483 5.483 21 C 0.070 3.930 22 C 0.068 3.932 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.339 0.661 31 H 0.330 0.670 32 H 0.266 0.734 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 14.428 10.065 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.133 4.133 4 C -0.163 4.163 5 C -0.117 4.117 6 C -0.134 4.134 7 C -0.268 4.268 8 C -0.027 4.027 9 C 0.144 3.856 10 H 0.068 0.932 11 N -0.357 5.357 12 C -0.556 4.556 13 H 0.037 0.963 14 C -0.166 4.166 15 N -0.583 5.583 16 Si 0.772 3.228 17 H -0.216 1.216 18 H -0.229 1.229 19 H -0.119 1.119 20 N -0.166 5.166 21 C -0.070 4.070 22 C -0.038 4.038 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.171 0.829 27 H 0.166 0.834 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.345 13.412 9.831 17.467 hybrid contribution 0.437 -0.070 -0.293 0.530 sum -4.908 13.342 9.538 17.119 Atomic orbital electron populations 1.20937 0.89579 1.03586 1.02991 1.19273 0.96951 0.89650 1.04951 1.21029 0.94314 0.96820 1.01126 1.20906 0.94411 0.97989 1.03042 1.20470 1.00031 0.90531 1.00692 1.19544 0.92942 0.94042 1.06912 1.21382 0.97616 0.91073 1.16752 1.21989 0.86098 0.95343 0.99295 1.17895 0.92664 0.82098 0.92962 0.93229 1.59640 1.05893 1.64988 1.05186 1.20789 1.51349 0.92615 0.90879 0.96293 1.25852 0.92807 1.00085 0.97830 1.70091 1.49906 1.15184 1.23139 0.85765 0.76608 0.76583 0.83811 1.21599 1.22856 1.11852 1.43925 1.06624 1.03605 1.62439 1.22243 0.79456 1.02037 1.03301 1.18562 0.93990 0.85098 1.06123 0.90155 0.89482 0.92097 0.82930 0.83368 0.85408 0.84460 0.84803 0.85699 0.92515 0.91708 0.89802 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 8.84 71.24 0.63 -1.77 16 2 C -0.11 -3.02 5.89 -19.77 -0.12 -3.14 16 3 C -0.11 -2.79 9.67 22.29 0.22 -2.57 16 4 C -0.14 -3.65 9.97 22.03 0.22 -3.43 16 5 C -0.10 -3.07 10.05 22.22 0.22 -2.84 16 6 C -0.13 -4.92 6.37 -20.20 -0.13 -5.05 16 7 C -0.24 -10.02 10.36 23.51 0.24 -9.78 16 8 C 0.08 3.53 5.79 40.87 0.24 3.76 16 9 C 0.26 11.45 2.27 43.43 0.10 11.55 16 10 H 0.05 2.18 5.63 -2.39 -0.01 2.16 16 11 N -0.83 -33.01 6.71 -174.96 -1.17 -34.18 16 12 C -0.52 -29.21 9.18 25.60 0.23 -28.98 16 13 H 0.02 1.23 7.99 -2.91 -0.02 1.21 16 14 C 0.03 1.95 5.47 84.65 0.46 2.41 16 15 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 16 Si 0.95 44.02 26.85 68.60 1.84 45.86 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.20 -8.31 5.74 99.48 0.57 -7.73 16 20 N -0.48 -18.28 3.18 -524.67 -1.67 -19.95 16 21 C 0.07 2.13 9.38 127.77 1.20 3.33 16 22 C 0.07 2.47 6.74 39.03 0.26 2.73 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.06 1.34 5.55 -2.39 -0.01 1.33 16 26 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.14 5.38 7.51 -2.91 -0.02 5.36 16 30 H 0.34 13.54 8.13 -89.69 -0.73 12.81 16 31 H 0.33 11.20 9.02 -89.69 -0.81 10.39 16 32 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 33 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.08 2.52 6.63 -2.38 -0.02 2.50 16 35 H 0.11 2.46 6.14 -2.39 -0.01 2.45 16 Total: -1.00 -70.43 284.04 2.53 -67.90 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.55 Total: 32.80 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 3.78 Total: -33.77 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -2.54 Total: -112.80 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.84 Total: 45.86 kcal Total: -70.43 2.53 -67.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.683 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds