Wall clock time and date at job start Mon Mar 30 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33522 * 125.68771 * 2 1 4 4 C 1.32549 * 109.15696 * 180.12251 * 3 2 1 5 5 C 1.40933 * 132.32992 * 179.28936 * 4 3 2 6 6 C 1.36025 * 119.32982 * 179.97438 * 5 4 3 7 7 C 1.40473 * 119.69317 * 359.97438 * 6 5 4 8 8 C 1.34951 * 120.29744 * 0.02944 * 7 6 5 9 9 C 1.50705 * 119.69034 * 179.97438 * 8 7 6 10 10 N 1.36480 * 120.61215 * 0.22991 * 8 7 6 11 11 C 1.35101 * 125.68479 * 179.42144 * 2 1 3 12 12 C 1.50706 * 126.41027 * 359.97438 * 11 2 1 13 13 C 1.52999 * 109.47169 * 263.71346 * 12 11 2 14 14 C 1.50697 * 109.47252 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00076 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00157 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99746 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47035 * 90.00273 * 18 16 14 20 20 H 1.48499 * 109.46679 * 210.00257 * 18 16 14 21 21 H 1.48499 * 109.46979 * 330.00106 * 18 16 14 22 22 H 1.08996 * 109.47294 * 270.58461 * 1 2 3 23 23 H 1.09009 * 109.46959 * 30.57992 * 1 2 3 24 24 H 1.08993 * 109.47370 * 150.57900 * 1 2 3 25 25 H 1.08002 * 120.33848 * 359.96780 * 5 4 3 26 26 H 1.07999 * 120.15478 * 179.97438 * 6 5 4 27 27 H 1.07999 * 119.85076 * 180.02562 * 7 6 5 28 28 H 1.09005 * 109.46666 * 97.40348 * 9 8 7 29 29 H 1.08995 * 109.47284 * 337.40393 * 9 8 7 30 30 H 1.09002 * 109.46968 * 217.40153 * 9 8 7 31 31 H 1.09005 * 109.46787 * 23.71304 * 12 11 2 32 32 H 1.09000 * 109.47056 * 143.71270 * 12 11 2 33 33 H 1.09006 * 109.46621 * 300.00133 * 13 12 11 34 34 H 1.09000 * 109.47193 * 60.00008 * 13 12 11 35 35 H 0.96998 * 119.99842 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2860 1.0845 0.0000 4 6 3.5567 0.7073 -0.0027 5 6 4.7629 1.4361 -0.0168 6 6 5.9465 0.7656 -0.0154 7 6 5.9505 -0.6390 0.0007 8 6 4.7873 -1.3230 0.0140 9 6 4.8076 -2.8299 0.0305 10 7 3.5927 -0.6630 0.0074 11 6 2.2951 -1.0973 0.0111 12 6 1.8318 -2.5313 0.0261 13 6 1.8258 -3.0503 1.4654 14 6 1.3631 -4.4844 1.4803 15 1 1.0993 -4.9763 0.5558 16 6 1.2767 -5.1684 2.6743 17 7 1.5984 -4.5696 3.8001 18 14 0.7024 -6.9459 2.6929 19 1 1.8743 -7.8462 2.5478 20 1 0.0155 -7.2307 3.9783 21 1 -0.2392 -7.1736 1.5673 22 1 -0.3633 0.0105 1.0276 23 1 -0.3633 0.8848 -0.5229 24 1 -0.3634 -0.8951 -0.5048 25 1 4.7478 2.5159 -0.0287 26 1 6.8787 1.3107 -0.0265 27 1 6.8887 -1.1739 0.0023 28 1 4.6851 -3.1836 1.0543 29 1 5.7591 -3.1848 -0.3652 30 1 3.9931 -3.2110 -0.5855 31 1 0.8246 -2.5920 -0.3862 32 1 2.5081 -3.1380 -0.5761 33 1 2.8331 -2.9895 1.8776 34 1 1.1495 -2.4436 2.0676 35 1 1.5372 -5.0507 4.6401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259731978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:59 Heat of formation + Delta-G solvation = 67.730548 kcal Electronic energy + Delta-G solvation = -17386.330778 eV Core-core repulsion = 14770.899405 eV Total energy + Delta-G solvation = -2615.431373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.50577 -37.45469 -34.85424 -33.28258 -32.03761 -31.05759 -29.46424 -27.26011 -26.78459 -24.52643 -22.35641 -21.78404 -20.96244 -19.44298 -16.99579 -16.42762 -16.24385 -15.63824 -15.28730 -14.50862 -13.82061 -13.61055 -13.37096 -13.26770 -12.66495 -12.45348 -12.39477 -12.31222 -11.85683 -11.71068 -11.32187 -11.22387 -10.95919 -10.85723 -10.71294 -10.48391 -9.96453 -9.73703 -9.50164 -9.16731 -8.42508 -8.20451 -7.17897 -6.06883 -4.11288 1.03712 1.63886 2.95054 3.22895 3.26629 3.33991 3.36797 3.83238 4.39247 4.50281 4.67478 5.00295 5.02809 5.23974 5.28564 5.52106 5.64250 5.66374 5.73279 5.73620 5.90658 6.06588 6.14318 6.20406 6.26939 6.35257 6.38275 6.55339 6.64010 6.81529 6.89926 7.14802 7.51390 7.59000 7.69232 7.91657 8.28662 8.31619 8.95622 9.53578 11.03723 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.006732 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.415243 B = 4157.969386 C = 4834.073275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.042 3.958 3 N -0.494 5.494 4 C 0.210 3.790 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.171 4.171 8 C 0.115 3.885 9 C -0.133 4.133 10 N -0.358 5.358 11 C -0.028 4.028 12 C -0.047 4.047 13 C 0.030 3.970 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 6.969 -8.229 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.215 5.215 4 C -0.033 4.033 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.192 4.192 8 C 0.011 3.989 9 C -0.189 4.189 10 N -0.031 5.031 11 C -0.141 4.141 12 C -0.085 4.085 13 C -0.007 4.007 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.161 0.839 26 H 0.154 0.846 27 H 0.162 0.838 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.673 7.698 -8.035 12.975 hybrid contribution 0.123 -1.691 0.300 1.722 sum 6.796 6.007 -7.735 11.921 Atomic orbital electron populations 1.20091 0.87114 1.02412 1.02775 1.20614 0.96598 0.87477 1.04157 1.70537 0.98202 1.29529 1.23276 1.20785 0.94468 0.80336 1.07669 1.20094 0.88051 0.99986 1.03251 1.20892 0.97785 0.93850 0.99959 1.20483 0.96494 0.94430 1.07826 1.20427 0.83692 0.95737 0.99068 1.21338 1.04181 0.87689 1.05690 1.42649 1.05502 1.08496 1.46406 1.21648 0.80519 0.99167 1.12728 1.20608 1.00307 0.85327 1.02293 1.19114 0.97474 0.95561 0.88534 1.21185 1.45106 0.96859 0.93053 0.92495 1.25010 0.95353 0.98210 0.95639 1.69972 1.48312 1.36860 0.97952 0.86601 0.78904 0.85039 0.77518 1.20673 1.21198 1.19776 0.90846 0.91484 0.90757 0.83908 0.84643 0.83822 0.88457 0.90075 0.89089 0.90437 0.91660 0.96681 0.96230 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.20 36.01 0.37 -0.71 16 2 C 0.04 0.83 7.06 -82.97 -0.59 0.25 16 3 N -0.49 -10.01 11.32 -9.00 -0.10 -10.12 16 4 C 0.21 3.96 7.81 -156.05 -1.22 2.74 16 5 C -0.09 -1.37 10.11 -39.36 -0.40 -1.77 16 6 C -0.10 -1.24 10.07 -39.53 -0.40 -1.64 16 7 C -0.17 -2.25 9.58 -39.91 -0.38 -2.63 16 8 C 0.11 1.87 6.78 -81.69 -0.55 1.31 16 9 C -0.13 -2.00 8.82 36.01 0.32 -1.68 16 10 N -0.36 -6.80 2.94 -54.29 -0.16 -6.96 16 11 C -0.03 -0.56 6.24 -81.47 -0.51 -1.07 16 12 C -0.05 -0.97 4.64 -27.88 -0.13 -1.09 16 13 C 0.03 0.76 4.84 -27.89 -0.14 0.63 16 14 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 24 H 0.07 1.11 7.04 -51.93 -0.37 0.75 16 25 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.14 1.42 8.00 -52.49 -0.42 1.00 16 28 H 0.10 1.68 6.94 -51.93 -0.36 1.32 16 29 H 0.08 0.93 7.98 -51.93 -0.41 0.51 16 30 H 0.09 1.45 4.92 -51.93 -0.26 1.20 16 31 H 0.08 1.50 6.97 -51.93 -0.36 1.14 16 32 H 0.07 1.25 5.13 -51.93 -0.27 0.98 16 33 H 0.01 0.40 6.57 -51.93 -0.34 0.06 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -32.01 289.25 -8.66 -40.67 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.44 Total: 0.15 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -4.04 Total: -18.53 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.47 Total: -42.59 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.01 -8.66 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.398 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds