Wall clock time and date at job start Mon Mar 30 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33522 * 125.68771 * 2 1 4 4 C 1.32549 * 109.15696 * 180.12251 * 3 2 1 5 5 C 1.40933 * 132.32992 * 179.28936 * 4 3 2 6 6 C 1.36025 * 119.32982 * 179.97438 * 5 4 3 7 7 C 1.40473 * 119.69317 * 359.97438 * 6 5 4 8 8 C 1.34951 * 120.29744 * 0.02944 * 7 6 5 9 9 C 1.50705 * 119.69034 * 179.97438 * 8 7 6 10 10 N 1.36480 * 120.61215 * 0.22991 * 8 7 6 11 11 C 1.35101 * 125.68479 * 179.42144 * 2 1 3 12 12 C 1.50706 * 126.41027 * 359.97438 * 11 2 1 13 13 C 1.52999 * 109.47169 * 263.71346 * 12 11 2 14 14 C 1.50697 * 109.47252 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00076 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00157 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99746 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47035 * 90.00273 * 18 16 14 20 20 H 1.48499 * 109.46679 * 210.00257 * 18 16 14 21 21 H 1.48499 * 109.46979 * 330.00106 * 18 16 14 22 22 H 1.08996 * 109.47294 * 270.58461 * 1 2 3 23 23 H 1.09009 * 109.46959 * 30.57992 * 1 2 3 24 24 H 1.08993 * 109.47370 * 150.57900 * 1 2 3 25 25 H 1.08002 * 120.33848 * 359.96780 * 5 4 3 26 26 H 1.07999 * 120.15478 * 179.97438 * 6 5 4 27 27 H 1.07999 * 119.85076 * 180.02562 * 7 6 5 28 28 H 1.09005 * 109.46666 * 97.40348 * 9 8 7 29 29 H 1.08995 * 109.47284 * 337.40393 * 9 8 7 30 30 H 1.09002 * 109.46968 * 217.40153 * 9 8 7 31 31 H 1.09005 * 109.46787 * 23.71304 * 12 11 2 32 32 H 1.09000 * 109.47056 * 143.71270 * 12 11 2 33 33 H 1.09006 * 109.46621 * 300.00133 * 13 12 11 34 34 H 1.09000 * 109.47193 * 60.00008 * 13 12 11 35 35 H 0.96998 * 119.99842 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2860 1.0845 0.0000 4 6 3.5567 0.7073 -0.0027 5 6 4.7629 1.4361 -0.0168 6 6 5.9465 0.7656 -0.0154 7 6 5.9505 -0.6390 0.0007 8 6 4.7873 -1.3230 0.0140 9 6 4.8076 -2.8299 0.0305 10 7 3.5927 -0.6630 0.0074 11 6 2.2951 -1.0973 0.0111 12 6 1.8318 -2.5313 0.0261 13 6 1.8258 -3.0503 1.4654 14 6 1.3631 -4.4844 1.4803 15 1 1.0993 -4.9763 0.5558 16 6 1.2767 -5.1684 2.6743 17 7 1.5984 -4.5696 3.8001 18 14 0.7024 -6.9459 2.6929 19 1 1.8743 -7.8462 2.5478 20 1 0.0155 -7.2307 3.9783 21 1 -0.2392 -7.1736 1.5673 22 1 -0.3633 0.0105 1.0276 23 1 -0.3633 0.8848 -0.5229 24 1 -0.3634 -0.8951 -0.5048 25 1 4.7478 2.5159 -0.0287 26 1 6.8787 1.3107 -0.0265 27 1 6.8887 -1.1739 0.0023 28 1 4.6851 -3.1836 1.0543 29 1 5.7591 -3.1848 -0.3652 30 1 3.9931 -3.2110 -0.5855 31 1 0.8246 -2.5920 -0.3862 32 1 2.5081 -3.1380 -0.5761 33 1 2.8331 -2.9895 1.8776 34 1 1.1495 -2.4436 2.0676 35 1 1.5372 -5.0507 4.6401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259731978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:59 Heat of formation + Delta-G solvation = 49.867642 kcal Electronic energy + Delta-G solvation = -17387.105371 eV Core-core repulsion = 14770.899405 eV Total energy + Delta-G solvation = -2616.205967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.84071 -38.67960 -36.48793 -34.92225 -33.59271 -32.54651 -30.92303 -28.49355 -28.40426 -26.18295 -23.81137 -23.20983 -22.51897 -20.84237 -18.66210 -18.08757 -17.53784 -17.09214 -16.46559 -16.35710 -15.24184 -14.94888 -14.89642 -14.68110 -14.20984 -14.00306 -13.76901 -13.55921 -13.39585 -13.10601 -12.85308 -12.75085 -12.56140 -12.41390 -12.13252 -11.97824 -11.63620 -11.48424 -11.32756 -10.93856 -10.55730 -9.51875 -8.55126 -8.19033 -6.32375 -0.13370 0.38341 1.41275 1.42644 1.53696 1.66637 1.83862 2.41163 2.59585 3.13677 3.27298 3.48696 3.76079 3.93699 4.09415 4.20586 4.32131 4.37282 4.48985 4.57532 4.66803 4.71846 4.84334 4.96267 4.97977 5.00341 5.12078 5.14841 5.22618 5.28781 5.48154 5.65097 5.71671 5.75776 5.82859 6.17601 6.23668 6.83865 6.90362 7.37716 8.91606 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.006732 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.415243 B = 4157.969386 C = 4834.073275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.028 3.972 3 N -0.530 5.530 4 C 0.198 3.802 5 C -0.115 4.115 6 C -0.076 4.076 7 C -0.149 4.149 8 C 0.071 3.929 9 C -0.124 4.124 10 N -0.364 5.364 11 C -0.066 4.066 12 C -0.029 4.029 13 C 0.045 3.955 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.260 1.260 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.167 0.833 26 H 0.187 0.813 27 H 0.187 0.813 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.077 0.923 33 H -0.010 1.010 34 H -0.020 1.020 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 6.760 -9.469 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 N -0.252 5.252 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.169 4.169 8 C -0.032 4.032 9 C -0.180 4.180 10 N -0.037 5.037 11 C -0.179 4.179 12 C -0.067 4.067 13 C 0.008 3.992 14 C -0.574 4.574 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.575 5.575 18 Si 0.789 3.211 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.185 1.185 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.184 0.816 26 H 0.205 0.795 27 H 0.204 0.796 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.009 0.991 34 H -0.001 1.001 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.778 7.479 -9.296 14.812 hybrid contribution -0.329 -1.521 0.689 1.702 sum 8.449 5.958 -8.607 13.452 Atomic orbital electron populations 1.20149 0.85593 1.03708 1.02709 1.21117 0.97932 0.87559 1.03615 1.70515 0.99209 1.29887 1.25560 1.21583 0.95398 0.80785 1.06767 1.20582 0.87341 1.01302 1.04237 1.21523 0.98829 0.93597 0.95949 1.21161 0.96800 0.95218 1.03731 1.20970 0.83915 0.96481 1.01839 1.21245 1.05775 0.87478 1.03539 1.42798 1.05855 1.08841 1.46195 1.21513 0.81710 0.98765 1.15872 1.20284 1.01098 0.86174 0.99109 1.18873 0.94763 0.94665 0.90942 1.21606 1.44583 0.97708 0.93546 0.91442 1.25957 0.95372 1.03015 0.95165 1.70125 1.49756 1.38903 0.98683 0.85454 0.78750 0.79230 0.77671 1.19606 1.21246 1.18450 0.91485 0.89791 0.89800 0.81595 0.79531 0.79607 0.91674 0.85992 0.90684 0.89833 0.90531 0.99144 1.00127 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.16 10.20 71.24 0.73 -1.44 16 2 C 0.03 1.17 7.06 41.58 0.29 1.47 16 3 N -0.53 -21.98 11.32 -182.40 -2.06 -24.04 16 4 C 0.20 7.42 7.81 134.11 1.05 8.47 16 5 C -0.11 -3.08 10.11 22.42 0.23 -2.86 16 6 C -0.08 -1.51 10.07 22.30 0.22 -1.28 16 7 C -0.15 -3.32 9.58 22.06 0.21 -3.11 16 8 C 0.07 2.24 6.78 41.08 0.28 2.52 16 9 C -0.12 -3.68 8.82 71.24 0.63 -3.05 16 10 N -0.36 -14.02 2.94 -325.68 -0.96 -14.98 16 11 C -0.07 -2.77 6.24 41.06 0.26 -2.51 16 12 C -0.03 -1.22 4.64 29.85 0.14 -1.08 16 13 C 0.04 2.37 4.84 29.85 0.14 2.52 16 14 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 18 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 24 H 0.08 2.59 7.04 -2.39 -0.02 2.57 16 25 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 26 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 27 H 0.19 2.55 8.00 -2.91 -0.02 2.52 16 28 H 0.06 2.34 6.94 -2.38 -0.02 2.32 16 29 H 0.12 2.47 7.98 -2.39 -0.02 2.45 16 30 H 0.07 2.43 4.92 -2.39 -0.01 2.42 16 31 H 0.08 3.35 6.97 -2.38 -0.02 3.33 16 32 H 0.08 3.03 5.13 -2.39 -0.01 3.01 16 33 H -0.01 -0.56 6.57 -2.38 -0.02 -0.57 16 34 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -73.12 289.25 5.25 -67.87 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.09 Total: 11.38 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.87 Total: -29.05 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -2.74 Total: -95.43 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.12 5.25 -67.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.742 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds