Wall clock time and date at job start Mon Mar 30 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.46916 * 2 1 4 4 N 1.30901 * 125.31611 * 269.99906 * 3 2 1 5 5 C 1.33404 * 109.87299 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.26984 * 179.97438 * 5 4 3 7 7 C 1.37985 * 107.45938 * 359.97438 * 5 4 3 8 8 C 1.40975 * 133.71069 * 179.97438 * 7 5 4 9 9 C 1.35879 * 119.17780 * 179.97438 * 8 7 5 10 10 C 1.40812 * 119.77235 * 0.07049 * 9 8 7 11 11 C 1.50698 * 119.68875 * 180.23798 * 10 9 8 12 12 C 1.50702 * 109.47056 * 269.72629 * 11 10 9 13 13 H 1.07994 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99467 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00433 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99598 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47008 * 60.00418 * 16 14 12 18 18 H 1.48505 * 109.46989 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47234 * 300.00250 * 16 14 12 20 20 C 1.34675 * 120.61698 * 359.96396 * 10 9 8 21 21 N 1.35036 * 125.31363 * 89.99949 * 3 2 1 22 22 H 1.08999 * 109.47294 * 299.99590 * 1 2 3 23 23 H 1.08997 * 109.47157 * 60.00149 * 1 2 3 24 24 H 1.09003 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46956 * 239.99743 * 2 1 3 26 26 H 1.08997 * 109.47157 * 119.99851 * 2 1 3 27 27 H 1.08995 * 109.47014 * 89.97292 * 6 5 4 28 28 H 1.08993 * 109.47111 * 209.97850 * 6 5 4 29 29 H 1.08997 * 109.47006 * 329.97751 * 6 5 4 30 30 H 1.08002 * 120.40774 * 0.03250 * 8 7 5 31 31 H 1.07999 * 120.11077 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47332 * 29.73065 * 11 10 9 33 33 H 1.09005 * 109.47063 * 149.72709 * 11 10 9 34 34 H 0.97005 * 120.00006 * 179.97438 * 15 14 12 35 35 H 1.08003 * 119.71561 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1342 -1.0681 5 6 2.7136 3.3464 -0.7129 6 6 3.1086 4.4614 -1.6467 7 6 2.7296 3.3922 0.6661 8 6 3.0812 4.3844 1.6038 9 6 2.9820 4.1072 2.9303 10 6 2.5335 2.8394 3.3480 11 6 2.4191 2.5358 4.8196 12 6 3.7189 1.9563 5.3155 13 1 4.5450 1.8211 4.6332 14 6 3.8529 1.5979 6.6401 15 7 2.8464 1.7612 7.4707 16 14 5.4639 0.8790 7.2546 17 1 6.5585 1.8583 7.0354 18 1 5.3512 0.5798 8.7049 19 1 5.7628 -0.3719 6.5124 20 6 2.2005 1.8977 2.4446 21 7 2.2924 2.1567 1.1019 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2350 5.0729 -1.8723 28 1 3.8718 5.0788 -1.1730 29 1 3.5046 4.0389 -2.5701 30 1 3.4242 5.3533 1.2719 31 1 3.2470 4.8563 3.6617 32 1 2.1994 3.4541 5.3642 33 1 1.6158 1.8168 4.9809 34 1 2.9407 1.5086 8.4025 35 1 1.8578 0.9304 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259747848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:15 Heat of formation + Delta-G solvation = 56.399264 kcal Electronic energy + Delta-G solvation = -16994.656259 eV Core-core repulsion = 14378.733525 eV Total energy + Delta-G solvation = -2615.922734 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.37830 -37.39285 -34.29992 -33.50654 -32.43634 -31.08606 -29.82091 -27.31677 -25.87991 -23.79863 -23.69676 -21.62211 -20.58875 -19.86934 -16.79625 -16.48213 -16.20362 -15.59391 -14.92576 -14.52625 -14.43097 -13.76342 -13.58482 -13.00980 -12.89121 -12.56329 -12.35530 -12.10579 -11.77981 -11.73159 -11.45891 -11.10681 -11.02587 -10.92539 -10.74929 -10.62260 -10.05396 -9.91324 -9.78392 -9.62363 -8.56057 -8.36226 -6.85083 -6.18049 -4.23767 1.35298 1.82531 3.10398 3.23741 3.28582 3.31097 3.35390 3.96161 4.34331 4.54044 4.95072 5.02671 5.17236 5.21073 5.29235 5.36295 5.42623 5.52994 5.61362 5.79353 5.84419 5.85204 5.88638 5.97711 6.11280 6.23026 6.38956 6.45819 6.65040 6.78332 6.97642 7.14384 7.32950 7.52188 7.70831 7.76319 8.12258 8.31095 8.80661 9.41472 10.91206 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025679 B = 0.006057 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.127740 B = 4621.616231 C = 5158.706017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C 0.148 3.852 4 N -0.456 5.456 5 C -0.017 4.017 6 C -0.054 4.054 7 C 0.004 3.996 8 C -0.097 4.097 9 C -0.098 4.098 10 C -0.045 4.045 11 C 0.058 3.942 12 C -0.520 4.520 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.013 3.987 21 N -0.347 5.347 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 1.696 -12.051 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.106 4.106 4 N -0.171 5.171 5 C -0.154 4.154 6 C -0.112 4.112 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.048 4.048 11 C 0.020 3.980 12 C -0.558 4.558 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.106 4.106 21 N -0.016 5.016 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.391 1.216 -12.659 12.940 hybrid contribution 1.020 -0.147 1.409 1.746 sum -1.371 1.070 -11.250 11.384 Atomic orbital electron populations 1.21747 0.94391 1.01866 1.02395 1.19836 0.96070 0.87367 1.03691 1.22823 1.10940 0.97145 0.79734 1.69707 1.15830 1.03719 1.27866 1.20720 1.09974 0.95007 0.89664 1.19878 1.00558 0.93727 0.97064 1.19386 1.09088 0.87500 0.94683 1.20410 1.01633 0.97825 0.91785 1.21209 0.98328 0.97173 0.95184 1.20345 0.93841 0.91693 0.98924 1.18295 0.98148 0.98218 0.83317 1.20977 0.98035 1.42389 0.94381 0.92483 1.24989 0.96794 0.95521 0.96710 1.69932 1.30862 1.47447 1.04714 0.86574 0.83580 0.79708 0.77733 1.20069 1.21074 1.20118 1.21444 1.08170 1.01907 0.79052 1.42659 1.40829 1.11768 1.06298 0.92753 0.92184 0.91878 0.89154 0.90462 0.91899 0.91634 0.91496 0.84491 0.84730 0.94506 0.94979 0.92559 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.03 -0.42 6.38 -27.88 -0.18 -0.59 16 3 C 0.15 2.59 7.21 -155.09 -1.12 1.47 16 4 N -0.46 -8.33 11.19 -6.40 -0.07 -8.40 16 5 C -0.02 -0.30 7.21 -82.00 -0.59 -0.89 16 6 C -0.05 -0.70 10.44 36.01 0.38 -0.32 16 7 C 0.00 0.07 6.74 -84.09 -0.57 -0.49 16 8 C -0.10 -1.60 10.10 -39.39 -0.40 -2.00 16 9 C -0.10 -1.78 9.73 -39.46 -0.38 -2.16 16 10 C -0.05 -0.93 5.04 -104.91 -0.53 -1.46 16 11 C 0.06 1.38 5.08 -29.03 -0.15 1.23 16 12 C -0.52 -13.78 9.09 -34.44 -0.31 -14.09 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 16 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.01 0.25 10.40 -16.48 -0.17 0.08 16 21 N -0.35 -6.49 2.94 -58.16 -0.17 -6.66 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.16 2.84 7.98 -52.48 -0.42 2.42 16 LS Contribution 302.40 15.07 4.56 4.56 Total: -1.00 -30.03 302.40 -8.74 -38.77 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.02 Total: -0.60 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -3.75 Total: -19.02 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.49 Total: -39.46 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.03 -8.74 -38.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.169 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds