Wall clock time and date at job start Mon Mar 30 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.46916 * 2 1 4 4 N 1.30901 * 125.31611 * 269.99906 * 3 2 1 5 5 C 1.33404 * 109.87299 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.26984 * 179.97438 * 5 4 3 7 7 C 1.37985 * 107.45938 * 359.97438 * 5 4 3 8 8 C 1.40975 * 133.71069 * 179.97438 * 7 5 4 9 9 C 1.35879 * 119.17780 * 179.97438 * 8 7 5 10 10 C 1.40812 * 119.77235 * 0.07049 * 9 8 7 11 11 C 1.50698 * 119.68875 * 180.23798 * 10 9 8 12 12 C 1.50702 * 109.47056 * 269.72629 * 11 10 9 13 13 H 1.07994 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99467 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00433 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99598 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47008 * 60.00418 * 16 14 12 18 18 H 1.48505 * 109.46989 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47234 * 300.00250 * 16 14 12 20 20 C 1.34675 * 120.61698 * 359.96396 * 10 9 8 21 21 N 1.35036 * 125.31363 * 89.99949 * 3 2 1 22 22 H 1.08999 * 109.47294 * 299.99590 * 1 2 3 23 23 H 1.08997 * 109.47157 * 60.00149 * 1 2 3 24 24 H 1.09003 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46956 * 239.99743 * 2 1 3 26 26 H 1.08997 * 109.47157 * 119.99851 * 2 1 3 27 27 H 1.08995 * 109.47014 * 89.97292 * 6 5 4 28 28 H 1.08993 * 109.47111 * 209.97850 * 6 5 4 29 29 H 1.08997 * 109.47006 * 329.97751 * 6 5 4 30 30 H 1.08002 * 120.40774 * 0.03250 * 8 7 5 31 31 H 1.07999 * 120.11077 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47332 * 29.73065 * 11 10 9 33 33 H 1.09005 * 109.47063 * 149.72709 * 11 10 9 34 34 H 0.97005 * 120.00006 * 179.97438 * 15 14 12 35 35 H 1.08003 * 119.71561 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1342 -1.0681 5 6 2.7136 3.3464 -0.7129 6 6 3.1086 4.4614 -1.6467 7 6 2.7296 3.3922 0.6661 8 6 3.0812 4.3844 1.6038 9 6 2.9820 4.1072 2.9303 10 6 2.5335 2.8394 3.3480 11 6 2.4191 2.5358 4.8196 12 6 3.7189 1.9563 5.3155 13 1 4.5450 1.8211 4.6332 14 6 3.8529 1.5979 6.6401 15 7 2.8464 1.7612 7.4707 16 14 5.4639 0.8790 7.2546 17 1 6.5585 1.8583 7.0354 18 1 5.3512 0.5798 8.7049 19 1 5.7628 -0.3719 6.5124 20 6 2.2005 1.8977 2.4446 21 7 2.2924 2.1567 1.1019 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2350 5.0729 -1.8723 28 1 3.8718 5.0788 -1.1730 29 1 3.5046 4.0389 -2.5701 30 1 3.4242 5.3533 1.2719 31 1 3.2470 4.8563 3.6617 32 1 2.1994 3.4541 5.3642 33 1 1.6158 1.8168 4.9809 34 1 2.9407 1.5086 8.4025 35 1 1.8578 0.9304 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:14 Heat of formation + Delta-G solvation = 41.788208 kcal Electronic energy + Delta-G solvation = -16995.289842 eV Core-core repulsion = 14378.733525 eV Total energy + Delta-G solvation = -2616.556317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.73853 -38.84762 -35.51384 -35.37875 -33.77980 -32.70599 -30.98959 -29.06689 -27.11882 -25.57086 -24.94958 -23.10096 -21.91995 -21.25786 -18.55107 -18.15939 -17.60174 -16.96312 -16.70380 -15.89849 -15.71470 -15.06488 -14.78904 -14.52490 -14.14663 -13.93108 -13.70771 -13.48342 -13.36274 -13.10519 -12.79996 -12.62381 -12.52113 -12.29699 -12.25593 -12.05234 -11.71721 -11.53533 -11.37031 -11.20324 -10.62899 -9.89810 -8.30072 -8.14878 -6.36917 -0.03492 0.39758 1.40324 1.40968 1.49585 1.73558 2.01477 2.36095 2.57864 3.08295 3.35986 3.60860 3.76174 3.92331 4.10115 4.19088 4.22914 4.33029 4.33626 4.63775 4.75637 4.87672 4.90064 4.93582 4.96687 5.07484 5.10740 5.15550 5.25665 5.29295 5.35231 5.60753 5.69423 5.78778 5.82567 6.09701 6.31117 6.74104 6.95944 7.32201 8.85100 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025679 B = 0.006057 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.127740 B = 4621.616231 C = 5158.706017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 C 0.146 3.854 4 N -0.477 5.477 5 C -0.013 4.013 6 C -0.055 4.055 7 C -0.030 4.030 8 C -0.072 4.072 9 C -0.124 4.124 10 C -0.060 4.060 11 C 0.068 3.932 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.011 3.989 21 N -0.358 5.358 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.177 0.823 31 H 0.143 0.857 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 1.856 -13.602 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.108 4.108 4 N -0.193 5.193 5 C -0.149 4.149 6 C -0.112 4.112 7 C -0.139 4.139 8 C -0.091 4.091 9 C -0.145 4.145 10 C -0.063 4.063 11 C 0.030 3.970 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.785 3.215 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.196 1.196 20 C -0.108 4.108 21 N -0.028 5.028 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.194 0.806 31 H 0.161 0.839 32 H 0.037 0.963 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.500 1.390 -14.219 14.366 hybrid contribution 0.696 -0.203 1.734 1.880 sum -0.804 1.186 -12.485 12.567 Atomic orbital electron populations 1.21695 0.93100 1.03395 1.01473 1.20051 0.97110 0.85468 1.04639 1.23635 1.09574 0.98304 0.79330 1.69798 1.16930 1.04501 1.28110 1.21525 1.07863 0.95497 0.90023 1.20062 1.01878 0.92732 0.96577 1.19891 1.10519 0.87918 0.95578 1.20781 0.98956 0.98800 0.90584 1.21240 1.00244 0.96597 0.96393 1.20053 0.95787 0.93445 0.97038 1.18009 0.96586 0.96534 0.85842 1.21267 0.98790 1.42325 0.94620 0.92963 1.25800 1.00036 0.95859 0.96927 1.70041 1.32809 1.48520 1.05045 0.85577 0.79608 0.79061 0.77300 1.19395 1.20505 1.19569 1.21335 1.08102 1.01801 0.79564 1.42771 1.41497 1.12490 1.06044 0.94118 0.92568 0.89155 0.87637 0.90002 0.90272 0.89535 0.90779 0.80560 0.83928 0.96342 0.96938 0.92406 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.89 71.98 0.71 -2.41 16 2 C -0.03 -0.87 6.38 29.85 0.19 -0.68 16 3 C 0.15 4.97 7.21 138.01 1.00 5.97 16 4 N -0.48 -16.71 11.19 -174.16 -1.95 -18.66 16 5 C -0.01 -0.41 7.21 42.26 0.30 -0.11 16 6 C -0.05 -1.22 10.44 71.24 0.74 -0.48 16 7 C -0.03 -1.04 6.74 38.76 0.26 -0.78 16 8 C -0.07 -2.25 10.10 22.39 0.23 -2.02 16 9 C -0.12 -4.48 9.73 22.35 0.22 -4.26 16 10 C -0.06 -2.53 5.04 -20.05 -0.10 -2.63 16 11 C 0.07 3.38 5.08 29.10 0.15 3.53 16 12 C -0.53 -28.76 9.09 25.60 0.23 -28.53 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.01 0.71 5.46 84.65 0.46 1.17 16 15 N -0.92 -53.10 13.29 21.45 0.28 -52.82 16 16 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.01 0.42 10.40 83.06 0.86 1.28 16 21 N -0.36 -13.24 2.94 -337.92 -0.99 -14.23 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.08 2.03 8.04 -2.39 -0.02 2.02 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 31 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.02 0.96 8.08 -2.39 -0.02 0.94 16 33 H 0.01 0.65 8.07 -2.38 -0.02 0.63 16 34 H 0.27 14.47 8.31 -92.70 -0.77 13.69 16 35 H 0.16 5.97 7.98 -2.91 -0.02 5.94 16 Total: -1.00 -64.52 302.40 5.69 -58.83 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.06 Total: 12.19 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 5.26 Total: -29.96 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.66 Total: -85.71 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -64.52 5.69 -58.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.618 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds