Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.53005 * 109.47051 * 119.99910 * 2 1 3 5 5 H 1.08997 * 109.47368 * 301.38523 * 4 2 1 6 6 C 1.50700 * 109.47202 * 181.38057 * 4 2 1 7 7 H 1.08001 * 120.00010 * 332.55226 * 6 4 2 8 8 C 1.37878 * 120.00066 * 152.54405 * 6 4 2 9 9 N 1.31513 * 119.99805 * 6.28532 * 8 6 4 10 10 Si 1.86804 * 119.99763 * 186.28936 * 8 6 4 11 11 H 1.48504 * 109.46642 * 180.02562 * 10 8 6 12 12 H 1.48496 * 109.47395 * 60.00052 * 10 8 6 13 13 H 1.48505 * 109.46970 * 299.99460 * 10 8 6 14 14 C 1.50704 * 109.46958 * 61.38630 * 4 2 1 15 15 C 1.40807 * 119.69483 * 59.72239 * 14 4 2 16 16 C 1.35884 * 119.77432 * 179.75858 * 15 14 4 17 17 C 1.40961 * 119.17294 * 0.49021 * 16 15 14 18 18 C 1.37998 * 133.71005 * 179.78315 * 17 16 15 19 19 N 1.33401 * 107.46034 * 179.97438 * 18 17 16 20 20 C 1.30899 * 109.87346 * 0.02562 * 19 18 17 21 21 N 1.35034 * 109.37092 * 359.97438 * 20 19 18 22 22 C 1.34672 * 119.68916 * 239.99509 * 14 4 2 23 23 H 1.08993 * 109.47220 * 59.99965 * 1 2 3 24 24 H 1.09005 * 109.47108 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47276 * 299.99561 * 1 2 3 26 26 H 1.09001 * 109.46942 * 239.99790 * 2 1 3 27 27 H 1.08999 * 109.47198 * 185.47099 * 3 2 1 28 28 H 1.08997 * 109.47133 * 305.47206 * 3 2 1 29 29 H 1.09001 * 109.47318 * 65.47459 * 3 2 1 30 30 H 0.96998 * 120.00119 * 354.60827 * 9 8 6 31 31 H 1.08003 * 120.11205 * 359.97438 * 15 14 4 32 32 H 1.07996 * 120.41182 * 180.26996 * 16 15 14 33 33 H 1.08002 * 126.26998 * 0.02562 * 18 17 16 34 34 H 1.08000 * 125.32022 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.71911 * 359.97438 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6566 -0.2220 2.1391 6 6 3.5466 -0.6917 1.2666 7 1 4.0962 -0.6319 0.3388 8 6 4.2234 -0.7409 2.4668 9 7 3.5626 -0.9377 3.5867 10 14 6.0789 -0.5277 2.5021 11 1 6.5613 -0.6217 3.9035 12 1 6.4353 0.8013 1.9436 13 1 6.7152 -1.5939 1.6876 14 6 1.5659 -2.1517 1.2322 15 6 1.9341 -2.9959 0.1671 16 6 1.5116 -4.2873 0.1526 17 6 0.6996 -4.7565 1.2050 18 6 0.1127 -5.9732 1.4870 19 7 -0.5538 -5.8396 2.6348 20 6 -0.4213 -4.6183 3.0868 21 7 0.3479 -3.9066 2.2353 22 6 0.7894 -2.6090 2.2330 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 3.1256 1.4440 -0.0980 28 1 1.5989 1.9838 -0.8369 29 1 1.7589 1.9272 0.9349 30 1 2.5932 -0.9702 3.5785 31 1 2.5531 -2.6192 -0.6337 32 1 1.7915 -4.9450 -0.6570 33 1 0.1813 -6.8696 0.8886 34 1 -0.8582 -4.2392 3.9988 35 1 0.5124 -1.9478 3.0407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259762945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = 61.456074 kcal Electronic energy + Delta-G solvation = -17662.946788 eV Core-core repulsion = 15047.243334 eV Total energy + Delta-G solvation = -2615.703455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.15539 -37.98279 -35.28874 -32.76659 -32.66418 -30.40644 -27.65955 -27.01739 -26.13794 -23.45318 -22.73738 -21.52477 -21.02344 -19.29506 -17.43813 -16.73512 -15.90191 -15.21743 -15.17559 -14.17529 -13.93991 -13.84702 -13.65686 -13.24585 -13.02795 -12.74512 -12.01316 -11.68151 -11.44064 -11.25417 -11.18280 -10.93608 -10.69001 -10.38069 -10.22058 -10.20162 -10.09315 -9.81807 -9.57209 -8.97268 -8.62576 -8.14467 -6.91182 -6.54528 -4.27831 1.47829 1.97677 3.25890 3.34334 3.34565 3.52894 3.56468 4.10049 4.38129 5.02760 5.04832 5.18081 5.36584 5.49177 5.58628 5.63579 5.67793 5.73326 5.83731 5.99069 6.16408 6.34223 6.36923 6.41220 6.44591 6.58118 6.66637 6.79983 6.91524 6.93252 7.03677 7.13236 7.23644 7.36096 7.80308 7.94711 8.22073 8.35467 8.64741 9.41744 10.82220 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.008702 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.963667 B = 3216.860982 C = 3908.858787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.128 4.128 4 C 0.073 3.927 5 H 0.043 0.957 6 C -0.582 4.582 7 H 0.056 0.944 8 C 0.025 3.975 9 N -0.900 5.900 10 Si 1.063 2.937 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.287 1.287 14 C -0.034 4.034 15 C -0.079 4.079 16 C -0.109 4.109 17 C 0.006 3.994 18 C -0.049 4.049 19 N -0.465 5.465 20 C 0.113 3.887 21 N -0.347 5.347 22 C 0.002 3.998 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.269 0.731 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.171 0.829 34 H 0.201 0.799 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 -0.674 -5.916 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.185 4.185 4 C 0.053 3.947 5 H 0.061 0.939 6 C -0.619 4.619 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.534 5.534 10 Si 0.891 3.109 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.214 1.214 14 C -0.037 4.037 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.204 4.204 19 N -0.179 5.179 20 C -0.161 4.161 21 N -0.016 5.016 22 C -0.117 4.117 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.188 0.812 34 H 0.217 0.783 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.614 -1.240 -4.327 5.772 hybrid contribution -0.772 0.551 -1.204 1.533 sum -4.386 -0.689 -5.531 7.092 Atomic orbital electron populations 1.21915 0.97342 1.00716 1.00450 1.21057 0.93075 0.96459 0.99094 1.21632 1.01878 0.95416 0.99555 1.18086 0.96616 0.85430 0.94557 0.93902 1.21781 0.89585 1.55284 0.95250 0.92585 1.25842 1.06956 0.93018 0.92326 1.70831 1.09949 1.43696 1.28958 0.83605 0.74367 0.76666 0.76243 1.20751 1.21151 1.21365 1.20527 0.90665 1.00944 0.91545 1.21040 0.97812 0.92579 0.98599 1.20399 0.98860 0.96346 0.97247 1.19693 1.05370 0.92495 0.92991 1.22265 1.04361 0.96432 0.97375 1.69853 1.20875 1.16433 1.10746 1.24541 1.03723 0.88089 0.99780 1.42838 1.32084 1.09396 1.17298 1.21415 1.03897 0.83184 1.03212 0.93885 0.93518 0.93382 0.92433 0.91744 0.94897 0.93591 0.91939 0.85114 0.84658 0.81197 0.78264 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.97 37.16 0.33 -2.03 16 2 C -0.08 -1.42 2.34 -90.62 -0.21 -1.64 16 3 C -0.13 -2.23 8.81 37.16 0.33 -1.90 16 4 C 0.07 1.55 1.20 -92.92 -0.11 1.44 16 5 H 0.04 1.00 6.49 -51.93 -0.34 0.66 16 6 C -0.58 -14.14 6.74 -34.44 -0.23 -14.37 16 7 H 0.06 1.36 7.77 -52.49 -0.41 0.95 16 8 C 0.02 0.64 5.45 -17.82 -0.10 0.54 16 9 N -0.90 -24.90 13.63 55.43 0.76 -24.14 16 10 Si 1.06 23.51 29.91 -169.99 -5.08 18.43 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 14 C -0.03 -0.69 3.47 -104.91 -0.36 -1.05 16 15 C -0.08 -1.50 8.83 -39.46 -0.35 -1.85 16 16 C -0.11 -1.91 10.11 -39.40 -0.40 -2.30 16 17 C 0.01 0.11 6.80 -84.09 -0.57 -0.46 16 18 C -0.05 -0.88 12.02 -16.96 -0.20 -1.09 16 19 N -0.46 -8.86 11.19 -13.95 -0.16 -9.01 16 20 C 0.11 2.05 12.75 -90.05 -1.15 0.91 16 21 N -0.35 -6.78 2.94 -62.43 -0.18 -6.97 16 22 C 0.00 0.04 10.12 -16.48 -0.17 -0.13 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.77 7.26 -51.93 -0.38 0.39 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.04 7.33 -51.93 -0.38 0.66 16 27 H 0.06 1.20 7.35 -51.93 -0.38 0.82 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.27 7.25 6.11 -40.82 -0.25 7.00 16 31 H 0.13 2.34 7.58 -52.48 -0.40 1.94 16 32 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.20 2.91 8.06 -52.49 -0.42 2.49 16 35 H 0.15 2.88 7.74 -52.49 -0.41 2.47 16 LS Contribution 290.96 15.07 4.38 4.38 Total: -1.00 -28.53 290.96 -8.17 -36.70 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.69 Total: 4.54 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.19 Total: -23.94 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.42 Total: -40.12 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.08 Total: 18.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.53 -8.17 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.153 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds