Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 C 1.53005 * 109.47051 * 119.99910 * 2 1 3 5 5 H 1.08997 * 109.47368 * 301.38523 * 4 2 1 6 6 C 1.50700 * 109.47202 * 181.38057 * 4 2 1 7 7 H 1.08001 * 120.00010 * 332.55226 * 6 4 2 8 8 C 1.37878 * 120.00066 * 152.54405 * 6 4 2 9 9 N 1.31513 * 119.99805 * 6.28532 * 8 6 4 10 10 Si 1.86804 * 119.99763 * 186.28936 * 8 6 4 11 11 H 1.48504 * 109.46642 * 180.02562 * 10 8 6 12 12 H 1.48496 * 109.47395 * 60.00052 * 10 8 6 13 13 H 1.48505 * 109.46970 * 299.99460 * 10 8 6 14 14 C 1.50704 * 109.46958 * 61.38630 * 4 2 1 15 15 C 1.40807 * 119.69483 * 59.72239 * 14 4 2 16 16 C 1.35884 * 119.77432 * 179.75858 * 15 14 4 17 17 C 1.40961 * 119.17294 * 0.49021 * 16 15 14 18 18 C 1.37998 * 133.71005 * 179.78315 * 17 16 15 19 19 N 1.33401 * 107.46034 * 179.97438 * 18 17 16 20 20 C 1.30899 * 109.87346 * 0.02562 * 19 18 17 21 21 N 1.35034 * 109.37092 * 359.97438 * 20 19 18 22 22 C 1.34672 * 119.68916 * 239.99509 * 14 4 2 23 23 H 1.08993 * 109.47220 * 59.99965 * 1 2 3 24 24 H 1.09005 * 109.47108 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47276 * 299.99561 * 1 2 3 26 26 H 1.09001 * 109.46942 * 239.99790 * 2 1 3 27 27 H 1.08999 * 109.47198 * 185.47099 * 3 2 1 28 28 H 1.08997 * 109.47133 * 305.47206 * 3 2 1 29 29 H 1.09001 * 109.47318 * 65.47459 * 3 2 1 30 30 H 0.96998 * 120.00119 * 354.60827 * 9 8 6 31 31 H 1.08003 * 120.11205 * 359.97438 * 15 14 4 32 32 H 1.07996 * 120.41182 * 180.26996 * 16 15 14 33 33 H 1.08002 * 126.26998 * 0.02562 * 18 17 16 34 34 H 1.08000 * 125.32022 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.71911 * 359.97438 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6566 -0.2220 2.1391 6 6 3.5466 -0.6917 1.2666 7 1 4.0962 -0.6319 0.3388 8 6 4.2234 -0.7409 2.4668 9 7 3.5626 -0.9377 3.5867 10 14 6.0789 -0.5277 2.5021 11 1 6.5613 -0.6217 3.9035 12 1 6.4353 0.8013 1.9436 13 1 6.7152 -1.5939 1.6876 14 6 1.5659 -2.1517 1.2322 15 6 1.9341 -2.9959 0.1671 16 6 1.5116 -4.2873 0.1526 17 6 0.6996 -4.7565 1.2050 18 6 0.1127 -5.9732 1.4870 19 7 -0.5538 -5.8396 2.6348 20 6 -0.4213 -4.6183 3.0868 21 7 0.3479 -3.9066 2.2353 22 6 0.7894 -2.6090 2.2330 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 3.1256 1.4440 -0.0980 28 1 1.5989 1.9838 -0.8369 29 1 1.7589 1.9272 0.9349 30 1 2.5932 -0.9702 3.5785 31 1 2.5531 -2.6192 -0.6337 32 1 1.7915 -4.9450 -0.6570 33 1 0.1813 -6.8696 0.8886 34 1 -0.8582 -4.2392 3.9988 35 1 0.5124 -1.9478 3.0407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259762945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = 49.098946 kcal Electronic energy + Delta-G solvation = -17663.482634 eV Core-core repulsion = 15047.243334 eV Total energy + Delta-G solvation = -2616.239300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.59788 -39.51796 -36.78860 -34.50699 -34.16407 -31.92617 -29.11431 -28.59914 -27.61321 -25.23330 -24.19862 -22.99286 -22.46381 -20.83826 -19.11578 -18.31589 -17.39690 -16.68953 -16.65803 -15.71290 -15.56042 -15.30768 -15.25997 -14.80164 -14.41526 -14.23415 -13.54105 -13.11556 -12.95715 -12.77674 -12.69003 -12.60678 -12.21958 -12.00094 -11.84299 -11.65647 -11.53804 -11.27827 -11.15555 -10.72060 -10.51652 -9.74652 -8.57840 -8.31837 -6.26581 0.02805 0.49970 1.54807 1.59550 1.77327 1.83015 2.13257 2.56086 2.64599 3.23350 3.62503 3.73550 3.92352 4.04236 4.16311 4.21626 4.24521 4.34210 4.45179 4.63389 4.83604 4.91135 4.92785 4.99378 5.07470 5.09286 5.20338 5.33458 5.43621 5.48903 5.59445 5.66317 5.73367 5.83305 6.12622 6.26051 6.34692 6.68867 6.92265 7.49581 8.84145 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.008702 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.963667 B = 3216.860982 C = 3908.858787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.074 3.926 5 H 0.015 0.985 6 C -0.576 4.576 7 H 0.054 0.946 8 C -0.024 4.024 9 N -0.937 5.937 10 Si 1.099 2.901 11 H -0.295 1.295 12 H -0.267 1.267 13 H -0.276 1.276 14 C -0.040 4.040 15 C -0.105 4.105 16 C -0.089 4.089 17 C -0.023 4.023 18 C -0.041 4.041 19 N -0.483 5.483 20 C 0.109 3.891 21 N -0.357 5.357 22 C -0.011 4.011 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.204 0.796 34 H 0.226 0.774 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -1.386 -7.593 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C -0.181 4.181 4 C 0.055 3.945 5 H 0.034 0.966 6 C -0.613 4.613 7 H 0.073 0.927 8 C -0.224 4.224 9 N -0.574 5.574 10 Si 0.923 3.077 11 H -0.221 1.221 12 H -0.193 1.193 13 H -0.201 1.201 14 C -0.043 4.043 15 C -0.126 4.126 16 C -0.108 4.108 17 C -0.133 4.133 18 C -0.196 4.196 19 N -0.198 5.198 20 C -0.165 4.165 21 N -0.026 5.026 22 C -0.130 4.130 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.192 0.808 33 H 0.220 0.780 34 H 0.243 0.757 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.829 -1.945 -6.036 7.408 hybrid contribution -0.807 0.695 -0.709 1.280 sum -4.636 -1.250 -6.746 8.280 Atomic orbital electron populations 1.21812 0.95556 1.00622 1.01529 1.21019 0.94593 0.96418 0.97461 1.21594 1.00993 0.95286 1.00273 1.18004 0.95088 0.86494 0.94958 0.96645 1.22045 0.91289 1.53334 0.94666 0.92724 1.26897 1.09956 0.93063 0.92488 1.70912 1.09651 1.46933 1.29950 0.83136 0.71047 0.77788 0.75691 1.22079 1.19254 1.20147 1.20416 0.91155 1.00307 0.92400 1.21132 0.99371 0.93322 0.98793 1.20819 0.96629 0.96103 0.97275 1.20177 1.06541 0.93023 0.93605 1.22895 1.02702 0.97088 0.96923 1.69918 1.21641 1.16719 1.11490 1.25204 1.02979 0.87979 1.00313 1.42944 1.32480 1.09245 1.17950 1.21366 1.04675 0.83764 1.03185 0.91389 0.94195 0.93659 0.91997 0.93314 0.91871 0.94668 0.92770 0.84310 0.80818 0.77953 0.75731 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.97 71.98 0.65 -3.60 16 2 C -0.08 -2.71 2.34 -10.79 -0.03 -2.74 16 3 C -0.12 -4.21 8.81 71.98 0.63 -3.58 16 4 C 0.07 3.20 1.20 -12.28 -0.01 3.19 16 5 H 0.02 0.74 6.49 -2.39 -0.02 0.73 16 6 C -0.58 -28.15 6.74 25.60 0.17 -27.98 16 7 H 0.05 2.63 7.77 -2.91 -0.02 2.61 16 8 C -0.02 -1.28 5.45 84.66 0.46 -0.82 16 9 N -0.94 -53.30 13.63 21.45 0.29 -53.01 16 10 Si 1.10 47.53 29.91 68.60 2.05 49.59 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 13 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 14 C -0.04 -1.62 3.47 -20.05 -0.07 -1.69 16 15 C -0.11 -3.86 8.83 22.35 0.20 -3.66 16 16 C -0.09 -2.91 10.11 22.39 0.23 -2.68 16 17 C -0.02 -0.82 6.80 38.76 0.26 -0.56 16 18 C -0.04 -1.37 12.02 84.40 1.01 -0.35 16 19 N -0.48 -17.51 11.19 -198.04 -2.22 -19.73 16 20 C 0.11 3.85 12.75 180.15 2.30 6.15 16 21 N -0.36 -13.69 2.94 -351.44 -1.03 -14.72 16 22 C -0.01 -0.45 10.12 83.06 0.84 0.39 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.27 7.26 -2.38 -0.02 1.25 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 2.15 7.33 -2.39 -0.02 2.13 16 27 H 0.05 1.78 7.35 -2.39 -0.02 1.76 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.26 14.69 6.11 -92.71 -0.57 14.12 16 31 H 0.14 4.76 7.58 -2.91 -0.02 4.74 16 32 H 0.17 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.20 5.16 8.06 -2.91 -0.02 5.13 16 34 H 0.23 6.33 8.06 -2.91 -0.02 6.31 16 35 H 0.15 5.89 7.74 -2.91 -0.02 5.87 16 Total: -1.00 -61.05 290.96 7.01 -54.04 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.27 Total: 21.77 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 6.64 Total: -37.94 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.96 Total: -87.46 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.05 Total: 49.59 kcal Total: -61.05 7.01 -54.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.144 kcal (2) G-P(sol) polarization free energy of solvation -61.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds