Wall clock time and date at job start Mon Mar 30 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30110 * 124.95358 * 2 1 4 4 C 1.35779 * 109.64888 * 180.02562 * 3 2 1 5 5 C 1.39741 * 133.60052 * 179.97438 * 4 3 2 6 6 C 1.36602 * 119.88570 * 180.02562 * 5 4 3 7 7 C 1.38782 * 120.66897 * 359.97438 * 6 5 4 8 8 C 1.37851 * 120.45144 * 0.28300 * 7 6 5 9 9 C 1.50698 * 120.15751 * 179.72184 * 8 7 6 10 10 C 1.52997 * 109.46903 * 264.99830 * 9 8 7 11 11 C 1.50703 * 109.46873 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00323 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99795 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99566 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99987 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46969 * 89.99953 * 15 13 11 17 17 H 1.48507 * 109.47066 * 209.99567 * 15 13 11 18 18 H 1.48498 * 109.47276 * 329.99593 * 15 13 11 19 19 C 1.38836 * 119.68642 * 359.48979 * 8 7 6 20 20 N 1.36037 * 124.95364 * 180.02562 * 2 1 3 21 21 C 1.46502 * 126.34411 * 359.95727 * 20 2 1 22 22 H 1.09006 * 109.46608 * 269.99576 * 1 2 3 23 23 H 1.09000 * 109.47230 * 29.99649 * 1 2 3 24 24 H 1.08998 * 109.47014 * 150.00203 * 1 2 3 25 25 H 1.07994 * 120.05882 * 359.97438 * 5 4 3 26 26 H 1.07999 * 119.66572 * 180.02562 * 6 5 4 27 27 H 1.08002 * 119.77158 * 179.97438 * 7 6 5 28 28 H 1.09005 * 109.47059 * 24.99673 * 9 8 7 29 29 H 1.09004 * 109.47418 * 144.99583 * 9 8 7 30 30 H 1.08996 * 109.47356 * 299.99789 * 10 9 8 31 31 H 1.08997 * 109.47597 * 59.99912 * 10 9 8 32 32 H 0.97002 * 119.99518 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47321 * 270.04039 * 21 20 2 34 34 H 1.08997 * 109.47166 * 30.04935 * 21 20 2 35 35 H 1.09006 * 109.46959 * 150.04726 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5620 0.7080 -0.0006 5 6 4.7586 1.4297 -0.0013 6 6 5.9532 0.7670 -0.0023 7 6 5.9931 -0.6202 -0.0021 8 6 4.8254 -1.3528 -0.0067 9 6 4.8765 -2.8589 -0.0128 10 6 4.7701 -3.3669 -1.4520 11 6 4.8219 -4.8730 -1.4581 12 1 4.9203 -5.4138 -0.5285 13 6 4.7425 -5.5607 -2.6506 14 7 4.7872 -6.8751 -2.6558 15 14 4.5715 -4.6255 -4.2585 16 1 5.9203 -4.3298 -4.8049 17 1 3.8127 -5.4504 -5.2327 18 1 3.8456 -3.3529 -4.0161 19 6 3.6019 -0.6965 -0.0009 20 7 2.2863 -1.1150 -0.0005 21 6 1.8166 -2.5026 -0.0002 22 1 -0.3633 -0.0001 1.0278 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 4.7391 2.5095 -0.0019 26 1 6.8758 1.3284 -0.0024 27 1 6.9456 -1.1293 -0.0033 28 1 5.8191 -3.1922 0.4215 29 1 4.0467 -3.2530 0.5740 30 1 3.8276 -3.0337 -1.8863 31 1 5.5999 -2.9729 -2.0387 32 1 4.7317 -7.3589 -3.4947 33 1 1.7000 -2.8466 1.0275 34 1 0.8572 -2.5616 -0.5142 35 1 2.5432 -3.1323 -0.5138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259769987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:02 Heat of formation + Delta-G solvation = 57.615879 kcal Electronic energy + Delta-G solvation = -17351.850117 eV Core-core repulsion = 14735.980139 eV Total energy + Delta-G solvation = -2615.869978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94540 -37.45397 -35.07142 -33.17877 -31.79750 -31.29594 -29.42627 -27.38255 -26.76731 -24.86789 -22.00740 -21.60715 -20.50293 -19.26476 -17.12838 -16.85653 -16.24917 -15.78540 -15.12223 -14.38865 -14.31571 -13.45294 -13.27780 -13.12834 -13.09122 -13.03454 -12.64949 -12.55282 -11.92907 -11.72259 -11.52929 -11.38439 -10.99761 -10.93977 -10.40364 -10.04093 -9.95270 -9.76042 -9.53670 -9.25392 -8.63708 -7.97863 -7.58321 -6.14644 -4.13999 1.26634 1.84869 2.87449 3.00121 3.24101 3.32105 3.36632 4.17927 4.28945 4.36465 4.71272 4.99584 5.19187 5.20236 5.27133 5.29295 5.34240 5.45637 5.59029 5.66800 5.73117 5.85432 5.94891 6.05083 6.12403 6.32156 6.47423 6.66554 6.79272 6.83524 6.91053 7.16953 7.22696 7.28529 7.40824 7.66803 8.12780 8.41725 8.89514 9.47776 10.98252 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.007582 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.654367 B = 3692.192110 C = 4313.380145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.269 3.731 3 N -0.503 5.503 4 C 0.045 3.955 5 C -0.087 4.087 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.075 4.075 10 C -0.006 4.006 11 C -0.525 4.525 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.900 5.900 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.267 1.267 19 C 0.051 3.949 20 N -0.481 5.481 21 C 0.058 3.942 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 12.579 5.578 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.004 3.996 3 N -0.224 5.224 4 C -0.073 4.073 5 C -0.107 4.107 6 C -0.142 4.142 7 C -0.137 4.137 8 C -0.054 4.054 9 C -0.113 4.113 10 C -0.043 4.043 11 C -0.563 4.563 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.192 1.192 19 C -0.058 4.058 20 N -0.170 5.170 21 C -0.083 4.083 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.779 13.090 5.458 15.314 hybrid contribution 0.216 -0.565 -0.986 1.157 sum -5.563 12.525 4.472 14.416 Atomic orbital electron populations 1.20319 0.84738 1.04360 1.03806 1.23526 0.95595 0.81076 0.99356 1.70337 1.01030 1.27377 1.23670 1.19007 0.91907 0.90418 1.05973 1.19824 0.89265 0.99117 1.02451 1.20575 0.97117 0.94318 1.02157 1.20807 0.97141 0.93531 1.02187 1.19312 0.89317 0.97099 0.99655 1.20721 1.02377 0.87778 1.00383 1.19596 0.96440 0.97013 0.91272 1.21110 1.50976 0.89206 0.94964 0.90815 1.24991 0.94434 0.94679 0.98999 1.69908 1.50529 1.06329 1.27039 0.86851 0.78850 0.80262 0.83814 1.20076 1.21269 1.19155 1.18754 0.85129 0.94645 1.07284 1.45092 1.04698 1.07609 1.59600 1.22441 1.02721 0.79494 1.03679 0.89699 0.88936 0.90293 0.86068 0.85830 0.85384 0.91068 0.91927 0.96919 0.96543 0.92616 0.90878 0.89895 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.17 36.00 0.37 -0.37 16 2 C 0.27 4.16 7.85 -154.83 -1.22 2.94 16 3 N -0.50 -8.95 11.27 -8.24 -0.09 -9.04 16 4 C 0.05 0.83 7.23 -84.70 -0.61 0.22 16 5 C -0.09 -1.38 10.05 -39.61 -0.40 -1.78 16 6 C -0.12 -1.77 9.96 -39.97 -0.40 -2.17 16 7 C -0.12 -1.90 9.67 -39.52 -0.38 -2.29 16 8 C -0.05 -0.94 5.14 -104.54 -0.54 -1.48 16 9 C -0.08 -1.48 4.59 -27.89 -0.13 -1.60 16 10 C -0.01 -0.14 3.39 -27.88 -0.09 -0.23 16 11 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 15 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 19 C 0.05 0.94 6.77 -83.99 -0.57 0.38 16 20 N -0.48 -7.99 3.21 -118.50 -0.38 -8.37 16 21 C 0.06 0.83 9.79 59.85 0.59 1.42 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.65 7.01 -51.93 -0.36 0.29 16 25 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 29 H 0.06 1.18 6.05 -51.93 -0.31 0.87 16 30 H 0.01 0.30 5.90 -51.93 -0.31 -0.01 16 31 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.94 7.00 -51.93 -0.36 0.58 16 35 H 0.12 2.01 4.13 -51.93 -0.21 1.80 16 LS Contribution 287.02 15.07 4.33 4.33 Total: -1.00 -32.59 287.02 -8.35 -40.94 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.50 Total: -0.82 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -3.81 Total: -17.70 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.30 Total: -43.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.59 -8.35 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259769987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.561 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds