Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30110 * 124.95358 * 2 1 4 4 C 1.35779 * 109.64888 * 180.02562 * 3 2 1 5 5 C 1.39741 * 133.60052 * 179.97438 * 4 3 2 6 6 C 1.36602 * 119.88570 * 180.02562 * 5 4 3 7 7 C 1.38782 * 120.66897 * 359.97438 * 6 5 4 8 8 C 1.37851 * 120.45144 * 0.28300 * 7 6 5 9 9 C 1.50698 * 120.15751 * 179.72184 * 8 7 6 10 10 C 1.52997 * 109.46903 * 264.99830 * 9 8 7 11 11 C 1.50703 * 109.46873 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00323 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99795 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99566 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99987 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46969 * 89.99953 * 15 13 11 17 17 H 1.48507 * 109.47066 * 209.99567 * 15 13 11 18 18 H 1.48498 * 109.47276 * 329.99593 * 15 13 11 19 19 C 1.38836 * 119.68642 * 359.48979 * 8 7 6 20 20 N 1.36037 * 124.95364 * 180.02562 * 2 1 3 21 21 C 1.46502 * 126.34411 * 359.95727 * 20 2 1 22 22 H 1.09006 * 109.46608 * 269.99576 * 1 2 3 23 23 H 1.09000 * 109.47230 * 29.99649 * 1 2 3 24 24 H 1.08998 * 109.47014 * 150.00203 * 1 2 3 25 25 H 1.07994 * 120.05882 * 359.97438 * 5 4 3 26 26 H 1.07999 * 119.66572 * 180.02562 * 6 5 4 27 27 H 1.08002 * 119.77158 * 179.97438 * 7 6 5 28 28 H 1.09005 * 109.47059 * 24.99673 * 9 8 7 29 29 H 1.09004 * 109.47418 * 144.99583 * 9 8 7 30 30 H 1.08996 * 109.47356 * 299.99789 * 10 9 8 31 31 H 1.08997 * 109.47597 * 59.99912 * 10 9 8 32 32 H 0.97002 * 119.99518 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47321 * 270.04039 * 21 20 2 34 34 H 1.08997 * 109.47166 * 30.04935 * 21 20 2 35 35 H 1.09006 * 109.46959 * 150.04726 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5620 0.7080 -0.0006 5 6 4.7586 1.4297 -0.0013 6 6 5.9532 0.7670 -0.0023 7 6 5.9931 -0.6202 -0.0021 8 6 4.8254 -1.3528 -0.0067 9 6 4.8765 -2.8589 -0.0128 10 6 4.7701 -3.3669 -1.4520 11 6 4.8219 -4.8730 -1.4581 12 1 4.9203 -5.4138 -0.5285 13 6 4.7425 -5.5607 -2.6506 14 7 4.7872 -6.8751 -2.6558 15 14 4.5715 -4.6255 -4.2585 16 1 5.9203 -4.3298 -4.8049 17 1 3.8127 -5.4504 -5.2327 18 1 3.8456 -3.3529 -4.0161 19 6 3.6019 -0.6965 -0.0009 20 7 2.2863 -1.1150 -0.0005 21 6 1.8166 -2.5026 -0.0002 22 1 -0.3633 -0.0001 1.0278 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 4.7391 2.5095 -0.0019 26 1 6.8758 1.3284 -0.0024 27 1 6.9456 -1.1293 -0.0033 28 1 5.8191 -3.1922 0.4215 29 1 4.0467 -3.2530 0.5740 30 1 3.8276 -3.0337 -1.8863 31 1 5.5999 -2.9729 -2.0387 32 1 4.7317 -7.3589 -3.4947 33 1 1.7000 -2.8466 1.0275 34 1 0.8572 -2.5616 -0.5142 35 1 2.5432 -3.1323 -0.5138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259769987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = 38.753764 kcal Electronic energy + Delta-G solvation = -17352.668039 eV Core-core repulsion = 14735.980139 eV Total energy + Delta-G solvation = -2616.687901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.15706 -38.71204 -36.55145 -34.93473 -33.46628 -32.29458 -30.97214 -28.46962 -28.14673 -26.47538 -23.29639 -23.18715 -21.91920 -20.56675 -19.01291 -18.21701 -17.52235 -16.98611 -16.37562 -16.36321 -15.70534 -14.93470 -14.69765 -14.50000 -14.25732 -14.19657 -13.99115 -13.56514 -13.45146 -13.14107 -12.93852 -12.74324 -12.59986 -12.28962 -11.92385 -11.83310 -11.70984 -11.44841 -11.10790 -10.84128 -10.80851 -9.20465 -8.86839 -8.33574 -6.37118 0.03168 0.60505 1.29641 1.32051 1.42424 1.72236 1.79320 2.29945 2.91704 3.01654 3.24656 3.57427 3.88243 3.99341 4.05064 4.31221 4.35328 4.41194 4.43870 4.62157 4.64824 4.67322 4.71710 4.76135 4.91110 4.95072 5.02569 5.25470 5.36381 5.38025 5.52257 5.61740 5.62751 5.72387 6.01672 6.23266 6.25166 6.70176 6.90937 7.27870 8.82579 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.007582 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.654367 B = 3692.192110 C = 4313.380145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.272 3.728 3 N -0.532 5.532 4 C 0.021 3.979 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.076 4.076 9 C -0.062 4.062 10 C 0.005 3.995 11 C -0.526 4.526 12 H 0.041 0.959 13 C 0.016 3.984 14 N -0.943 5.943 15 Si 0.939 3.061 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.259 1.259 19 C 0.024 3.976 20 N -0.489 5.489 21 C 0.058 3.942 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.162 0.838 27 H 0.143 0.857 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.267 0.733 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 14.505 5.200 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 N -0.254 5.254 4 C -0.097 4.097 5 C -0.112 4.112 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.079 4.079 9 C -0.100 4.100 10 C -0.032 4.032 11 C -0.564 4.564 12 H 0.060 0.940 13 C -0.181 4.181 14 N -0.584 5.584 15 Si 0.763 3.237 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.184 1.184 19 C -0.085 4.085 20 N -0.179 5.179 21 C -0.083 4.083 22 H 0.124 0.876 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.159 0.841 26 H 0.180 0.820 27 H 0.161 0.839 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.373 15.021 5.091 17.093 hybrid contribution 0.390 -1.161 -0.779 1.451 sum -5.982 13.861 4.313 15.700 Atomic orbital electron populations 1.20577 0.81032 1.05816 1.05615 1.24527 0.97494 0.80201 0.97068 1.70352 1.01089 1.28507 1.25438 1.19493 0.92951 0.90719 1.06574 1.20217 0.88993 1.00274 1.01694 1.20943 0.98259 0.93698 1.00386 1.21134 0.97075 0.94557 1.01094 1.19257 0.90394 0.96006 1.02215 1.20478 1.02286 0.89301 0.97911 1.19433 0.95885 0.94129 0.93764 1.21372 1.49943 0.91362 0.93730 0.94037 1.25806 0.94310 0.95406 1.02622 1.70037 1.52200 1.08016 1.28128 0.85834 0.79155 0.79132 0.79563 1.19370 1.20541 1.18372 1.19013 0.85991 0.95213 1.08283 1.45320 1.04336 1.08509 1.59689 1.22494 1.02973 0.78169 1.04697 0.87554 0.87933 0.88315 0.84058 0.82045 0.83915 0.91189 0.91967 0.97157 0.96973 0.92385 0.89316 0.86842 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.17 71.23 0.72 -0.50 16 2 C 0.27 7.94 7.85 137.92 1.08 9.03 16 3 N -0.53 -18.32 11.27 -179.97 -2.03 -20.35 16 4 C 0.02 0.74 7.23 39.45 0.29 1.03 16 5 C -0.09 -2.76 10.05 22.25 0.22 -2.53 16 6 C -0.11 -3.01 9.96 22.02 0.22 -2.79 16 7 C -0.12 -3.69 9.67 22.31 0.22 -3.48 16 8 C -0.08 -2.77 5.14 -19.81 -0.10 -2.87 16 9 C -0.06 -2.47 4.59 29.85 0.14 -2.33 16 10 C 0.01 0.24 3.39 29.85 0.10 0.34 16 11 C -0.53 -29.31 9.66 25.60 0.25 -29.06 16 12 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 13 C 0.02 0.94 5.47 84.66 0.46 1.40 16 14 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 15 Si 0.94 44.26 27.47 68.60 1.88 46.15 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.26 -11.82 6.54 99.48 0.65 -11.17 16 19 C 0.02 0.88 6.77 38.86 0.26 1.14 16 20 N -0.49 -15.74 3.21 -528.83 -1.70 -17.44 16 21 C 0.06 1.59 9.79 127.77 1.25 2.84 16 22 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.10 1.29 7.01 -2.39 -0.02 1.27 16 25 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 26 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 27 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.07 2.71 8.05 -2.38 -0.02 2.69 16 29 H 0.06 2.41 6.05 -2.39 -0.01 2.40 16 30 H 0.01 0.49 5.90 -2.39 -0.01 0.47 16 31 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.33 7.00 -2.39 -0.02 2.31 16 35 H 0.08 2.88 4.13 -2.38 -0.01 2.87 16 Total: -1.00 -71.30 287.02 4.60 -66.70 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.03 Total: 9.97 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 5.11 Total: -27.79 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -3.42 Total: -95.03 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -71.30 4.60 -66.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259769987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.453 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds