Wall clock time and date at job start Mon Mar 30 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47426 * 2 1 4 4 N 1.30907 * 125.31514 * 270.04285 * 3 2 1 5 5 C 1.33403 * 109.87327 * 179.97438 * 4 3 2 6 6 C 1.37997 * 107.45641 * 359.97438 * 5 4 3 7 7 C 1.40979 * 133.71007 * 180.02562 * 6 5 4 8 8 C 1.35874 * 119.17674 * 179.97438 * 7 6 5 9 9 C 1.50697 * 120.11135 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47466 * 89.99865 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.40809 * 119.77324 * 0.25321 * 8 7 6 20 20 C 1.34670 * 120.61774 * 359.46063 * 19 8 7 21 21 N 1.35038 * 125.31372 * 89.99806 * 3 2 1 22 22 H 1.09001 * 109.47126 * 59.99705 * 1 2 3 23 23 H 1.08998 * 109.47841 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46991 * 300.00098 * 1 2 3 25 25 H 1.09004 * 109.46991 * 239.99902 * 2 1 3 26 26 H 1.09001 * 109.47126 * 120.00295 * 2 1 3 27 27 H 1.07992 * 126.27014 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.40668 * 359.95501 * 7 6 5 29 29 H 1.09002 * 109.47120 * 329.99618 * 9 8 7 30 30 H 1.08998 * 109.46862 * 210.00420 * 9 8 7 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 33 33 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 34 34 H 1.07997 * 119.69104 * 179.72632 * 19 8 7 35 35 H 1.08002 * 119.72396 * 180.25719 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2839 2.1344 -1.0682 5 6 2.7123 3.3469 -0.7130 6 6 2.7285 3.3926 0.6661 7 6 3.0789 4.3852 1.6039 8 6 2.9804 4.1076 2.9303 9 6 3.3500 5.1530 3.9509 10 6 2.1151 5.9878 4.2961 11 6 2.4846 7.0327 5.3173 12 1 3.4988 7.0955 5.6831 13 6 1.5280 7.9094 5.7836 14 7 0.2931 7.8333 5.3378 15 14 1.9862 9.2051 7.0488 16 1 3.0418 10.0889 6.4923 17 1 0.7876 10.0152 7.3839 18 1 2.4931 8.5408 8.2764 19 6 2.5376 2.8379 3.3480 20 6 2.1998 1.8980 2.4447 21 7 2.2926 2.1567 1.1019 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9939 4.1463 -1.3821 28 1 3.4215 5.3542 1.2720 29 1 4.1246 5.8019 3.5423 30 1 3.7225 4.6654 4.8518 31 1 1.3405 5.3389 4.7048 32 1 1.7427 6.4753 3.3952 33 1 -0.3799 8.4498 5.6662 34 1 2.4641 2.6172 4.4026 35 1 1.8580 0.9303 2.7811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798787.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:39 Heat of formation + Delta-G solvation = 58.457626 kcal Electronic energy + Delta-G solvation = -16630.774548 eV Core-core repulsion = 14014.941071 eV Total energy + Delta-G solvation = -2615.833477 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.58592 -37.70284 -34.43727 -33.94688 -32.66679 -30.63076 -30.16545 -27.43024 -25.25517 -23.67256 -23.35487 -21.95839 -20.56990 -20.17792 -17.25197 -16.54706 -16.10877 -15.74554 -15.17820 -14.79332 -14.52720 -14.01778 -13.82848 -13.49108 -12.80974 -12.77655 -12.47137 -11.95278 -11.79566 -11.63116 -11.42169 -11.28299 -11.08279 -10.94362 -10.67734 -10.25436 -10.09689 -9.90413 -9.46119 -9.18859 -8.92617 -8.40688 -7.09558 -6.05303 -4.09253 1.09148 1.52341 2.79466 3.19566 3.29789 3.34790 3.36634 3.72164 4.38565 4.41292 4.59794 4.77097 5.02139 5.10023 5.14902 5.27886 5.30159 5.30521 5.41804 5.64351 5.72686 5.79461 5.90017 6.05235 6.12973 6.19786 6.31123 6.52349 6.71584 6.80863 6.85783 7.01055 7.39611 7.59451 7.71284 7.93016 8.08854 8.32807 8.97384 9.55381 11.05546 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.042174 B = 0.004372 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.750470 B = 6402.211711 C = 6536.751432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C 0.144 3.856 4 N -0.452 5.452 5 C -0.039 4.039 6 C 0.019 3.981 7 C -0.092 4.092 8 C -0.061 4.061 9 C -0.076 4.076 10 C 0.030 3.970 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.110 4.110 20 C 0.031 3.969 21 N -0.360 5.360 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.177 0.823 28 H 0.144 0.856 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.148 0.852 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -14.017 -7.244 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 C -0.110 4.110 4 N -0.166 5.166 5 C -0.193 4.193 6 C -0.091 4.091 7 C -0.112 4.112 8 C -0.064 4.064 9 C -0.113 4.113 10 C -0.007 4.007 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.131 4.131 20 C -0.089 4.089 21 N -0.032 5.032 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.162 0.838 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.166 0.834 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.903 -14.374 -8.050 16.729 hybrid contribution 0.170 1.166 1.608 1.993 sum 3.073 -13.208 -6.442 15.013 Atomic orbital electron populations 1.21769 0.94235 1.01933 1.02698 1.19831 0.96166 0.87227 1.03556 1.22936 1.11009 0.97279 0.79776 1.69843 1.14865 1.04191 1.27693 1.22396 1.10042 0.96299 0.90567 1.19772 1.07076 0.86777 0.95454 1.20394 1.01767 0.97945 0.91088 1.20280 0.96305 0.94833 0.94976 1.20827 1.01165 0.94486 0.94869 1.19081 0.91154 0.93749 0.96715 1.21193 0.95798 1.15531 1.23846 0.92559 1.25018 0.94970 0.97610 0.96699 1.69958 1.01919 1.37807 1.43575 0.86645 0.77844 0.81616 0.81823 1.20164 1.21263 1.20208 1.20911 0.99454 0.92800 0.99980 1.21486 1.05399 1.01557 0.80409 1.42663 1.42184 1.12354 1.05963 0.91890 0.91818 0.92787 0.88966 0.90822 0.80584 0.83783 0.91757 0.91872 0.96483 0.96338 0.92852 0.83440 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.03 -0.30 6.38 -27.89 -0.18 -0.48 16 3 C 0.14 2.13 7.21 -155.08 -1.12 1.01 16 4 N -0.45 -7.43 11.19 -10.12 -0.11 -7.55 16 5 C -0.04 -0.62 12.02 -16.96 -0.20 -0.83 16 6 C 0.02 0.31 6.80 -84.09 -0.57 -0.26 16 7 C -0.09 -1.55 9.75 -39.39 -0.38 -1.93 16 8 C -0.06 -1.05 5.14 -104.50 -0.54 -1.59 16 9 C -0.08 -1.47 5.29 -27.89 -0.15 -1.62 16 10 C 0.03 0.75 4.95 -27.88 -0.14 0.61 16 11 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.11 -1.64 9.66 -39.87 -0.39 -2.02 16 20 C 0.03 0.42 10.80 -16.48 -0.18 0.24 16 21 N -0.36 -5.57 2.94 -58.15 -0.17 -5.74 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 27 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.14 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.16 1.53 7.98 -52.49 -0.42 1.11 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -31.84 302.03 -8.93 -40.77 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.02 Total: -1.35 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.89 Total: -21.09 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.45 Total: -39.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.84 -8.93 -40.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798787.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.228 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds