Wall clock time and date at job start Mon Mar 30 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47426 * 2 1 4 4 N 1.30907 * 125.31514 * 270.04285 * 3 2 1 5 5 C 1.33403 * 109.87327 * 179.97438 * 4 3 2 6 6 C 1.37997 * 107.45641 * 359.97438 * 5 4 3 7 7 C 1.40979 * 133.71007 * 180.02562 * 6 5 4 8 8 C 1.35874 * 119.17674 * 179.97438 * 7 6 5 9 9 C 1.50697 * 120.11135 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47466 * 89.99865 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.40809 * 119.77324 * 0.25321 * 8 7 6 20 20 C 1.34670 * 120.61774 * 359.46063 * 19 8 7 21 21 N 1.35038 * 125.31372 * 89.99806 * 3 2 1 22 22 H 1.09001 * 109.47126 * 59.99705 * 1 2 3 23 23 H 1.08998 * 109.47841 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46991 * 300.00098 * 1 2 3 25 25 H 1.09004 * 109.46991 * 239.99902 * 2 1 3 26 26 H 1.09001 * 109.47126 * 120.00295 * 2 1 3 27 27 H 1.07992 * 126.27014 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.40668 * 359.95501 * 7 6 5 29 29 H 1.09002 * 109.47120 * 329.99618 * 9 8 7 30 30 H 1.08998 * 109.46862 * 210.00420 * 9 8 7 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 33 33 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 34 34 H 1.07997 * 119.69104 * 179.72632 * 19 8 7 35 35 H 1.08002 * 119.72396 * 180.25719 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2839 2.1344 -1.0682 5 6 2.7123 3.3469 -0.7130 6 6 2.7285 3.3926 0.6661 7 6 3.0789 4.3852 1.6039 8 6 2.9804 4.1076 2.9303 9 6 3.3500 5.1530 3.9509 10 6 2.1151 5.9878 4.2961 11 6 2.4846 7.0327 5.3173 12 1 3.4988 7.0955 5.6831 13 6 1.5280 7.9094 5.7836 14 7 0.2931 7.8333 5.3378 15 14 1.9862 9.2051 7.0488 16 1 3.0418 10.0889 6.4923 17 1 0.7876 10.0152 7.3839 18 1 2.4931 8.5408 8.2764 19 6 2.5376 2.8379 3.3480 20 6 2.1998 1.8980 2.4447 21 7 2.2926 2.1567 1.1019 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9939 4.1463 -1.3821 28 1 3.4215 5.3542 1.2720 29 1 4.1246 5.8019 3.5423 30 1 3.7225 4.6654 4.8518 31 1 1.3405 5.3389 4.7048 32 1 1.7427 6.4753 3.3952 33 1 -0.3799 8.4498 5.6662 34 1 2.4641 2.6172 4.4026 35 1 1.8580 0.9303 2.7811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798787.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:39 Heat of formation + Delta-G solvation = 42.002059 kcal Electronic energy + Delta-G solvation = -16631.488115 eV Core-core repulsion = 14014.941071 eV Total energy + Delta-G solvation = -2616.547044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.75397 -38.95279 -35.98975 -35.07245 -34.28534 -32.07380 -31.49879 -28.82701 -26.87658 -24.77370 -24.54324 -23.54501 -21.74526 -21.59663 -18.55929 -18.37590 -17.41520 -16.91247 -16.51934 -16.34118 -15.88603 -15.11113 -14.86331 -14.55901 -14.47973 -14.43105 -13.68302 -13.54538 -13.08447 -12.89856 -12.72733 -12.60320 -12.46681 -12.30136 -12.02404 -11.86505 -11.73774 -11.32520 -11.22984 -11.04049 -10.55293 -10.14600 -8.32048 -8.18028 -6.31699 -0.09250 0.31497 1.41744 1.44264 1.52193 1.68412 2.03655 2.40152 2.49341 3.13893 3.40857 3.55007 3.75934 3.84371 3.96956 4.22415 4.26940 4.36153 4.41719 4.55901 4.71591 4.82742 4.85490 4.88637 4.96906 5.00923 5.12188 5.18082 5.30729 5.42300 5.49711 5.56569 5.68711 5.79189 5.83820 6.21905 6.29033 6.85492 6.90396 7.38228 8.91586 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.042174 B = 0.004372 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.750470 B = 6402.211711 C = 6536.751432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C 0.152 3.848 4 N -0.479 5.479 5 C -0.047 4.047 6 C -0.007 4.007 7 C -0.102 4.102 8 C -0.077 4.077 9 C -0.061 4.061 10 C 0.037 3.963 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.264 1.264 19 C -0.129 4.129 20 C 0.045 3.955 21 N -0.370 5.370 22 H 0.045 0.955 23 H 0.092 0.908 24 H 0.045 0.955 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.193 0.807 28 H 0.145 0.855 29 H 0.066 0.934 30 H 0.075 0.925 31 H -0.007 1.007 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.167 0.833 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -15.623 -6.559 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.103 4.103 4 N -0.194 5.194 5 C -0.201 4.201 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.080 4.080 9 C -0.098 4.098 10 C 0.000 4.000 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.789 3.211 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.149 4.149 20 C -0.074 4.074 21 N -0.042 5.042 22 H 0.064 0.936 23 H 0.111 0.889 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.210 0.790 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.011 0.989 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.184 0.816 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.460 -15.978 -7.364 17.931 hybrid contribution -0.031 1.585 1.294 2.047 sum 3.429 -14.393 -6.070 15.993 Atomic orbital electron populations 1.21739 0.93538 1.03460 1.01445 1.20105 0.96582 0.84696 1.05484 1.23874 1.08759 0.98489 0.79146 1.69881 1.16116 1.04605 1.28788 1.22792 1.09601 0.96831 0.90858 1.19865 1.08415 0.87634 0.95733 1.20463 1.02066 0.98314 0.91289 1.20179 0.97749 0.95616 0.94477 1.20533 0.98504 0.94557 0.96199 1.18915 0.92896 0.93567 0.94670 1.21686 0.96264 1.16073 1.24160 0.91645 1.25972 0.94796 1.00026 0.98896 1.70103 1.03149 1.38995 1.45210 0.85513 0.77646 0.78685 0.79285 1.19189 1.21140 1.18905 1.21101 1.00279 0.92148 1.01384 1.22117 1.03189 1.02813 0.79289 1.42918 1.42313 1.12023 1.06923 0.93581 0.88903 0.93604 0.87886 0.88042 0.79038 0.83694 0.91535 0.90675 0.98867 0.99536 0.92834 0.81557 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 71.98 0.71 -1.65 16 2 C -0.03 -0.53 6.38 29.84 0.19 -0.34 16 3 C 0.15 4.22 7.21 138.01 1.00 5.22 16 4 N -0.48 -15.41 11.19 -185.92 -2.08 -17.49 16 5 C -0.05 -1.52 12.02 84.40 1.01 -0.51 16 6 C -0.01 -0.25 6.80 38.77 0.26 0.02 16 7 C -0.10 -3.48 9.75 22.39 0.22 -3.26 16 8 C -0.08 -2.67 5.14 -19.79 -0.10 -2.77 16 9 C -0.06 -2.37 5.29 29.85 0.16 -2.21 16 10 C 0.04 1.89 4.95 29.85 0.15 2.03 16 11 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 12 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 15 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 C -0.13 -3.64 9.66 22.08 0.21 -3.43 16 20 C 0.04 1.10 10.80 83.06 0.90 2.00 16 21 N -0.37 -10.89 2.94 -337.90 -0.99 -11.88 16 22 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.10 1.26 8.04 -2.39 -0.02 1.24 16 27 H 0.19 5.14 8.06 -2.91 -0.02 5.11 16 28 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.07 2.52 8.08 -2.39 -0.02 2.50 16 30 H 0.07 2.72 8.09 -2.39 -0.02 2.70 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.17 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.20 3.02 7.98 -2.91 -0.02 2.99 16 Total: -1.00 -69.82 302.03 5.70 -64.12 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.06 Total: 10.42 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 5.40 Total: -34.28 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.79 Total: -85.71 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.82 5.70 -64.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798787.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.120 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds