Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 C 1.53010 * 109.46767 * 119.99576 * 2 1 3 5 5 H 1.08998 * 109.46982 * 298.28071 * 4 2 1 6 6 C 1.50700 * 109.46986 * 58.27758 * 4 2 1 7 7 H 1.08008 * 120.00260 * 55.40435 * 6 4 2 8 8 C 1.37878 * 120.00232 * 235.40818 * 6 4 2 9 9 N 1.31517 * 119.99791 * 5.90197 * 8 6 4 10 10 Si 1.86801 * 120.00217 * 185.90247 * 8 6 4 11 11 H 1.48495 * 109.46887 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46743 * 120.00035 * 10 8 6 13 13 H 1.48499 * 109.47135 * 239.99904 * 10 8 6 14 14 C 1.50693 * 109.46888 * 178.27537 * 4 2 1 15 15 C 1.34675 * 119.72755 * 324.99958 * 14 4 2 16 16 C 1.40812 * 120.62165 * 180.02562 * 15 14 4 17 17 C 1.35881 * 119.76888 * 359.97438 * 16 15 14 18 18 C 1.40964 * 119.17971 * 0.02562 * 17 16 15 19 19 C 1.37993 * 133.71079 * 179.97438 * 18 17 16 20 20 N 1.33400 * 107.46248 * 180.28172 * 19 18 17 21 21 C 1.30908 * 109.86675 * 359.55778 * 20 19 18 22 22 N 1.35036 * 109.37133 * 0.44946 * 21 20 19 23 23 H 1.09000 * 109.47125 * 294.35381 * 1 2 3 24 24 H 1.09001 * 109.46896 * 54.34404 * 1 2 3 25 25 H 1.08991 * 109.47479 * 174.34684 * 1 2 3 26 26 H 1.08997 * 109.47339 * 239.99149 * 2 1 3 27 27 H 1.09007 * 109.47053 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46945 * 299.99553 * 3 2 1 29 29 H 1.08998 * 109.47761 * 59.99793 * 3 2 1 30 30 H 0.96994 * 119.99981 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.68514 * 0.02562 * 15 14 4 32 32 H 1.07991 * 120.11078 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.40818 * 179.97438 * 17 16 15 34 34 H 1.08001 * 126.27120 * 0.02562 * 19 18 17 35 35 H 1.08000 * 125.31343 * 180.15989 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7020 -0.1898 2.1390 6 6 1.5030 -2.1291 1.2710 7 1 1.6734 -2.7851 0.4300 8 6 0.7940 -2.5800 2.3642 9 7 0.4862 -1.7494 3.3364 10 14 0.2708 -4.3704 2.4647 11 1 0.7376 -5.0911 1.2532 12 1 0.8692 -4.9939 3.6723 13 1 -1.2097 -4.4495 2.5487 14 6 3.5463 -0.7584 1.2282 15 6 4.1947 -0.8883 0.0550 16 6 5.6017 -0.9257 0.0134 17 6 6.3135 -0.8294 1.1669 18 6 5.6256 -0.6937 2.3897 19 6 6.0305 -0.5749 3.7035 20 7 4.9318 -0.4819 4.4543 21 6 3.8678 -0.5254 3.6929 22 7 4.2450 -0.6601 2.4033 23 1 -0.3633 0.4238 0.9362 24 1 -0.3633 0.5991 -0.8350 25 1 -0.3634 -1.0226 -0.1012 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4423 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 -0.0122 -2.0666 4.1056 31 1 3.6301 -0.9646 -0.8625 32 1 6.1131 -1.0306 -0.9319 33 1 7.3930 -0.8573 1.1470 34 1 7.0502 -0.5640 4.0594 35 1 2.8474 -0.4678 4.0421 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = 65.386952 kcal Electronic energy + Delta-G solvation = -17951.191037 eV Core-core repulsion = 15335.658038 eV Total energy + Delta-G solvation = -2615.532999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.00991 -37.59987 -35.43175 -32.68260 -32.39145 -30.11393 -28.00717 -27.01211 -26.00776 -23.83360 -22.39475 -21.77600 -20.50101 -18.86217 -17.09374 -16.67879 -15.68527 -15.06501 -14.98821 -14.64091 -13.99363 -13.86415 -13.13898 -13.11518 -12.73500 -12.27855 -11.86985 -11.58307 -11.45171 -11.41019 -11.09760 -11.05222 -10.71950 -10.36678 -10.22450 -10.08222 -9.96323 -9.60684 -9.32868 -9.26134 -8.73577 -8.41356 -6.68755 -6.29398 -4.34485 1.61642 2.04748 3.16274 3.26567 3.28937 3.48001 3.83882 4.13697 4.27166 4.97900 5.23785 5.32157 5.55765 5.58026 5.68705 5.75651 5.82243 5.87419 6.00537 6.22016 6.31968 6.45816 6.53948 6.56809 6.60486 6.69926 6.80899 6.91680 6.99486 7.03945 7.21803 7.32004 7.39256 7.53475 7.63660 7.96381 8.09403 8.62791 8.73462 9.29073 10.75722 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.010726 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.865629 B = 2609.734049 C = 3291.836129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.151 4.151 4 C 0.062 3.938 5 H 0.086 0.914 6 C -0.507 4.507 7 H 0.061 0.939 8 C 0.074 3.926 9 N -0.882 5.882 10 Si 0.893 3.107 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.161 3.839 15 C -0.194 4.194 16 C -0.100 4.100 17 C -0.126 4.126 18 C -0.001 4.001 19 C -0.054 4.054 20 N -0.472 5.472 21 C 0.163 3.837 22 N -0.354 5.354 23 H 0.050 0.950 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.139 0.861 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.168 0.832 35 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 3.090 -5.717 8.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 C -0.208 4.208 4 C 0.043 3.957 5 H 0.104 0.896 6 C -0.544 4.544 7 H 0.079 0.921 8 C -0.131 4.131 9 N -0.519 5.519 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.207 1.207 14 C 0.057 3.943 15 C -0.214 4.214 16 C -0.122 4.122 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.207 4.207 20 N -0.185 5.185 21 C -0.113 4.113 22 N -0.024 5.024 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.185 0.815 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.745 3.186 -4.593 7.333 hybrid contribution -0.173 -1.223 -0.720 1.429 sum 4.572 1.963 -5.314 7.280 Atomic orbital electron populations 1.21546 0.95073 1.01682 0.99626 1.21183 0.96177 0.93637 0.98821 1.21979 1.00512 0.97787 1.00555 1.18390 0.82295 0.97932 0.97094 0.89616 1.20906 1.33872 0.96384 1.03276 0.92091 1.24959 0.94852 0.97799 0.95448 1.69806 1.38376 1.34463 1.09216 0.86498 0.78336 0.84682 0.78422 1.19564 1.20703 1.20681 1.21710 0.97463 0.92584 0.82506 1.20443 0.93798 1.09858 0.97350 1.20964 0.94129 0.99353 0.97709 1.20146 0.99223 1.05543 0.89674 1.19710 0.83421 1.11010 0.96853 1.22279 0.97832 1.13071 0.87515 1.69981 0.97769 1.17470 1.33313 1.25092 1.00372 1.08384 0.77459 1.42938 1.06804 1.44898 1.07730 0.93070 0.95293 0.91865 0.92513 0.93417 0.93882 0.93302 0.92214 0.84369 0.86013 0.85150 0.81475 0.76841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.80 37.16 0.33 -1.96 16 2 C -0.08 -1.49 2.07 -90.62 -0.19 -1.68 16 3 C -0.15 -2.55 8.92 37.15 0.33 -2.22 16 4 C 0.06 1.37 1.78 -92.92 -0.17 1.20 16 5 H 0.09 2.10 6.08 -51.93 -0.32 1.79 16 6 C -0.51 -12.39 7.05 -34.44 -0.24 -12.63 16 7 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 8 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 9 N -0.88 -22.66 12.62 55.43 0.70 -21.96 16 10 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.16 3.40 4.96 -81.52 -0.40 2.99 16 15 C -0.19 -3.60 8.13 -39.87 -0.32 -3.92 16 16 C -0.10 -1.63 10.07 -39.45 -0.40 -2.03 16 17 C -0.13 -2.11 10.11 -39.40 -0.40 -2.51 16 18 C 0.00 -0.01 6.80 -84.10 -0.57 -0.58 16 19 C -0.05 -1.05 12.02 -16.96 -0.20 -1.26 16 20 N -0.47 -10.38 11.19 -13.95 -0.16 -10.54 16 21 C 0.16 3.70 12.11 -90.04 -1.09 2.61 16 22 N -0.35 -7.76 2.94 -58.24 -0.17 -7.93 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.26 7.38 -51.93 -0.38 0.88 16 26 H 0.06 1.03 6.37 -51.93 -0.33 0.70 16 27 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.14 2.36 6.15 -52.48 -0.32 2.03 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 35 H 0.22 4.98 7.65 -52.49 -0.40 4.58 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -26.72 288.95 -8.32 -35.04 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.60 Total: 6.10 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -3.42 Total: -20.23 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.37 Total: -40.43 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.72 -8.32 -35.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.429 kcal (2) G-P(sol) polarization free energy of solvation -26.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds