Wall clock time and date at job start Mon Mar 30 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47426 * 2 1 4 4 C 1.53010 * 109.46767 * 119.99576 * 2 1 3 5 5 H 1.08998 * 109.46982 * 298.28071 * 4 2 1 6 6 C 1.50700 * 109.46986 * 58.27758 * 4 2 1 7 7 H 1.08008 * 120.00260 * 55.40435 * 6 4 2 8 8 C 1.37878 * 120.00232 * 235.40818 * 6 4 2 9 9 N 1.31517 * 119.99791 * 5.90197 * 8 6 4 10 10 Si 1.86801 * 120.00217 * 185.90247 * 8 6 4 11 11 H 1.48495 * 109.46887 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46743 * 120.00035 * 10 8 6 13 13 H 1.48499 * 109.47135 * 239.99904 * 10 8 6 14 14 C 1.50693 * 109.46888 * 178.27537 * 4 2 1 15 15 C 1.34675 * 119.72755 * 324.99958 * 14 4 2 16 16 C 1.40812 * 120.62165 * 180.02562 * 15 14 4 17 17 C 1.35881 * 119.76888 * 359.97438 * 16 15 14 18 18 C 1.40964 * 119.17971 * 0.02562 * 17 16 15 19 19 C 1.37993 * 133.71079 * 179.97438 * 18 17 16 20 20 N 1.33400 * 107.46248 * 180.28172 * 19 18 17 21 21 C 1.30908 * 109.86675 * 359.55778 * 20 19 18 22 22 N 1.35036 * 109.37133 * 0.44946 * 21 20 19 23 23 H 1.09000 * 109.47125 * 294.35381 * 1 2 3 24 24 H 1.09001 * 109.46896 * 54.34404 * 1 2 3 25 25 H 1.08991 * 109.47479 * 174.34684 * 1 2 3 26 26 H 1.08997 * 109.47339 * 239.99149 * 2 1 3 27 27 H 1.09007 * 109.47053 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46945 * 299.99553 * 3 2 1 29 29 H 1.08998 * 109.47761 * 59.99793 * 3 2 1 30 30 H 0.96994 * 119.99981 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.68514 * 0.02562 * 15 14 4 32 32 H 1.07991 * 120.11078 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.40818 * 179.97438 * 17 16 15 34 34 H 1.08001 * 126.27120 * 0.02562 * 19 18 17 35 35 H 1.08000 * 125.31343 * 180.15989 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7020 -0.1898 2.1390 6 6 1.5030 -2.1291 1.2710 7 1 1.6734 -2.7851 0.4300 8 6 0.7940 -2.5800 2.3642 9 7 0.4862 -1.7494 3.3364 10 14 0.2708 -4.3704 2.4647 11 1 0.7376 -5.0911 1.2532 12 1 0.8692 -4.9939 3.6723 13 1 -1.2097 -4.4495 2.5487 14 6 3.5463 -0.7584 1.2282 15 6 4.1947 -0.8883 0.0550 16 6 5.6017 -0.9257 0.0134 17 6 6.3135 -0.8294 1.1669 18 6 5.6256 -0.6937 2.3897 19 6 6.0305 -0.5749 3.7035 20 7 4.9318 -0.4819 4.4543 21 6 3.8678 -0.5254 3.6929 22 7 4.2450 -0.6601 2.4033 23 1 -0.3633 0.4238 0.9362 24 1 -0.3633 0.5991 -0.8350 25 1 -0.3634 -1.0226 -0.1012 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4423 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 -0.0122 -2.0666 4.1056 31 1 3.6301 -0.9646 -0.8625 32 1 6.1131 -1.0306 -0.9319 33 1 7.3930 -0.8573 1.1470 34 1 7.0502 -0.5640 4.0594 35 1 2.8474 -0.4678 4.0421 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:23 Heat of formation + Delta-G solvation = 53.684127 kcal Electronic energy + Delta-G solvation = -17951.698510 eV Core-core repulsion = 15335.658038 eV Total energy + Delta-G solvation = -2616.040472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.56270 -39.15576 -36.94539 -34.38127 -34.01000 -31.65517 -29.62790 -28.57494 -27.50508 -25.55262 -23.96536 -23.24691 -22.07785 -20.42708 -18.72256 -18.43988 -17.19963 -16.64027 -16.46354 -16.40379 -15.46134 -15.36896 -14.80084 -14.68243 -14.27074 -13.86022 -13.53269 -13.03416 -12.97183 -12.93718 -12.82053 -12.60699 -12.41501 -11.95008 -11.79320 -11.65677 -11.45961 -11.22177 -11.02744 -10.95322 -10.62179 -9.95977 -8.32183 -8.06436 -6.27581 0.19610 0.52272 1.33484 1.39244 1.46422 1.93909 2.21430 2.36355 2.73259 3.11522 3.81949 3.85577 4.04117 4.14308 4.26326 4.34213 4.38927 4.42941 4.55900 4.74423 4.91486 5.01551 5.08456 5.11901 5.17389 5.25802 5.28321 5.42822 5.50947 5.54317 5.63743 5.69441 5.79276 5.84175 6.03588 6.16161 6.47328 6.84236 7.03787 7.36843 8.85168 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.010726 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.865629 B = 2609.734049 C = 3291.836129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.141 4.141 4 C 0.067 3.933 5 H 0.049 0.951 6 C -0.509 4.509 7 H 0.055 0.945 8 C 0.031 3.969 9 N -0.908 5.908 10 Si 0.939 3.061 11 H -0.266 1.266 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.116 3.884 15 C -0.174 4.174 16 C -0.099 4.099 17 C -0.116 4.116 18 C -0.014 4.014 19 C -0.060 4.060 20 N -0.488 5.488 21 C 0.124 3.876 22 N -0.358 5.358 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.205 0.795 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 3.078 -8.415 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.198 4.198 4 C 0.047 3.953 5 H 0.067 0.933 6 C -0.547 4.547 7 H 0.073 0.927 8 C -0.170 4.170 9 N -0.546 5.546 10 Si 0.765 3.235 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.014 3.986 15 C -0.194 4.194 16 C -0.120 4.120 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.214 4.214 20 N -0.202 5.202 21 C -0.150 4.150 22 N -0.027 5.027 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.192 0.808 34 H 0.221 0.779 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.032 3.174 -7.308 10.627 hybrid contribution -0.766 -1.190 0.023 1.415 sum 6.266 1.984 -7.285 9.812 Atomic orbital electron populations 1.21479 0.95247 1.00915 0.99699 1.21138 0.96019 0.94782 0.97623 1.21869 1.00386 0.96361 1.01219 1.18203 0.83563 0.96452 0.97056 0.93293 1.21117 1.33382 0.97547 1.02646 0.92686 1.25518 0.95581 1.00246 0.95637 1.69926 1.39564 1.35440 1.09621 0.85793 0.78073 0.81755 0.77846 1.19011 1.21813 1.20277 1.21637 0.97034 0.96596 0.83362 1.20861 0.95495 1.06401 0.96661 1.21445 0.92897 0.98007 0.99677 1.20736 1.01380 1.03261 0.88164 1.20401 0.82757 1.10721 0.98455 1.22951 0.98647 1.12330 0.87431 1.69928 0.98457 1.17779 1.34053 1.24662 0.99901 1.11875 0.78593 1.43000 1.07867 1.44408 1.07428 0.95413 0.92046 0.93683 0.91108 0.93415 0.91016 0.94768 0.92711 0.82752 0.81267 0.80776 0.77866 0.79141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.80 71.98 0.63 -3.69 16 2 C -0.08 -2.83 2.07 -10.79 -0.02 -2.85 16 3 C -0.14 -4.55 8.92 71.98 0.64 -3.91 16 4 C 0.07 3.00 1.78 -12.28 -0.02 2.98 16 5 H 0.05 2.55 6.08 -2.39 -0.01 2.54 16 6 C -0.51 -25.39 7.05 25.60 0.18 -25.21 16 7 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 8 C 0.03 1.61 5.45 84.65 0.46 2.08 16 9 N -0.91 -49.27 12.62 21.45 0.27 -49.00 16 10 Si 0.94 42.40 29.54 68.60 2.03 44.43 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.12 4.86 4.96 40.92 0.20 5.06 16 15 C -0.17 -5.90 8.13 22.08 0.18 -5.72 16 16 C -0.10 -2.72 10.07 22.35 0.23 -2.49 16 17 C -0.12 -3.35 10.11 22.39 0.23 -3.12 16 18 C -0.01 -0.52 6.80 38.76 0.26 -0.25 16 19 C -0.06 -2.26 12.02 84.40 1.01 -1.25 16 20 N -0.49 -21.91 11.19 -198.04 -2.22 -24.12 16 21 C 0.12 5.93 12.11 180.15 2.18 8.11 16 22 N -0.36 -15.75 2.94 -338.17 -1.00 -16.75 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.81 7.38 -2.39 -0.02 1.79 16 26 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 27 H 0.05 1.52 6.56 -2.38 -0.02 1.50 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.16 4.66 6.15 -2.91 -0.02 4.64 16 32 H 0.17 3.09 8.06 -2.92 -0.02 3.06 16 33 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.20 5.85 8.06 -2.91 -0.02 5.82 16 35 H 0.19 9.78 7.65 -2.91 -0.02 9.75 16 Total: -1.00 -60.59 288.95 6.33 -54.26 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.08 Total: 21.47 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 6.17 Total: -30.28 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.94 Total: -89.88 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -60.59 6.33 -54.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.944 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds