Wall clock time and date at job start Mon Mar 30 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52993 * 109.47256 * 2 1 4 4 C 1.53005 * 109.46731 * 119.99598 * 2 1 3 5 5 H 1.08996 * 109.47296 * 302.78813 * 4 2 1 6 6 C 1.50703 * 109.47191 * 182.79110 * 4 2 1 7 7 H 1.08004 * 119.99445 * 299.08858 * 6 4 2 8 8 C 1.37874 * 120.00186 * 119.08650 * 6 4 2 9 9 N 1.31518 * 119.99868 * 173.45269 * 8 6 4 10 10 Si 1.86797 * 120.00171 * 353.44900 * 8 6 4 11 11 H 1.48503 * 109.46822 * 91.84178 * 10 8 6 12 12 H 1.48492 * 109.47626 * 211.84552 * 10 8 6 13 13 H 1.48502 * 109.47151 * 331.84939 * 10 8 6 14 14 C 1.50695 * 109.47192 * 62.79188 * 4 2 1 15 15 C 1.34671 * 119.72374 * 34.99712 * 14 4 2 16 16 C 1.40818 * 120.62110 * 180.02562 * 15 14 4 17 17 C 1.35876 * 119.77012 * 0.02562 * 16 15 14 18 18 C 1.40969 * 119.17732 * 359.97195 * 17 16 15 19 19 C 1.37996 * 133.70901 * 180.02562 * 18 17 16 20 20 N 1.33407 * 107.45799 * 179.97438 * 19 18 17 21 21 C 1.30895 * 109.87291 * 359.97438 * 20 19 18 22 22 N 1.35043 * 109.37235 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47824 * 300.00229 * 1 2 3 24 24 H 1.09003 * 109.47220 * 60.00805 * 1 2 3 25 25 H 1.09008 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47617 * 239.99281 * 2 1 3 27 27 H 1.08997 * 109.47379 * 185.36740 * 3 2 1 28 28 H 1.09000 * 109.47465 * 305.36753 * 3 2 1 29 29 H 1.09006 * 109.47300 * 65.36611 * 3 2 1 30 30 H 0.96995 * 119.99758 * 179.97438 * 9 8 6 31 31 H 1.08000 * 119.69000 * 359.72862 * 15 14 4 32 32 H 1.07993 * 120.11359 * 179.97438 * 16 15 14 33 33 H 1.07997 * 120.40954 * 180.02562 * 17 16 15 34 34 H 1.07995 * 126.27009 * 0.02562 * 19 18 17 35 35 H 1.08002 * 125.32117 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0398 -0.7212 1.2494 5 1 1.6362 -0.2370 2.1386 6 6 3.5453 -0.6616 1.2845 7 1 4.1220 -1.1070 0.4874 8 6 4.1862 -0.0385 2.3342 9 7 5.4964 -0.0974 2.4329 10 14 3.1938 0.8893 3.6163 11 1 2.8589 -0.0234 4.7388 12 1 3.9920 2.0319 4.1286 13 1 1.9414 1.3969 3.0006 14 6 1.5948 -2.1605 1.2153 15 6 1.5213 -2.8091 0.0374 16 6 1.1073 -4.1539 -0.0164 17 6 0.7780 -4.8048 1.1299 18 6 0.8582 -4.1172 2.3580 19 6 0.6043 -4.4712 3.6674 20 7 0.8552 -3.4033 4.4265 21 6 1.2497 -2.4063 3.6756 22 7 1.2681 -2.7987 2.3836 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1256 1.4439 -0.0961 28 1 1.6003 1.9833 -0.8380 29 1 1.7572 1.9278 0.9342 30 1 5.9473 0.3412 3.1712 31 1 1.7778 -2.2914 -0.8752 32 1 1.0509 -4.6660 -0.9656 33 1 0.4595 -5.8363 1.1007 34 1 0.2654 -5.4362 4.0141 35 1 1.5185 -1.4234 4.0334 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:26 Heat of formation + Delta-G solvation = 71.937307 kcal Electronic energy + Delta-G solvation = -18028.060569 eV Core-core repulsion = 15412.811615 eV Total energy + Delta-G solvation = -2615.248954 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22068 -37.82483 -35.63134 -32.81627 -32.47879 -30.31956 -28.39997 -27.37685 -26.23765 -23.64369 -22.50515 -21.92259 -20.76103 -18.95517 -17.62898 -16.92570 -15.88699 -15.22891 -15.21918 -14.58483 -14.19218 -14.01210 -13.39872 -13.19075 -12.91357 -12.58137 -12.33637 -11.77537 -11.72282 -11.55901 -11.25802 -10.96897 -10.72591 -10.51065 -10.36432 -10.16320 -9.91524 -9.80043 -9.62432 -9.32276 -8.78040 -8.56698 -6.82897 -6.35303 -4.35559 1.46057 1.86809 3.06358 3.14028 3.17762 3.27098 3.62949 4.01319 4.15269 4.88378 5.08946 5.14158 5.28341 5.38866 5.54258 5.55263 5.64684 5.69856 5.83013 5.96856 6.13461 6.27010 6.34305 6.39019 6.41393 6.42563 6.54746 6.68519 6.79717 6.82419 7.00562 7.11346 7.13867 7.26951 7.38038 7.81291 8.20389 8.41316 8.69774 9.24093 10.76696 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.011468 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.051935 B = 2440.996326 C = 3091.559052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 C -0.134 4.134 4 C 0.046 3.954 5 H 0.052 0.948 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.083 3.917 9 N -0.881 5.881 10 Si 0.852 3.148 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.254 1.254 14 C 0.152 3.848 15 C -0.178 4.178 16 C -0.098 4.098 17 C -0.121 4.121 18 C 0.008 3.992 19 C -0.049 4.049 20 N -0.462 5.462 21 C 0.139 3.861 22 N -0.353 5.353 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.269 0.731 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.173 0.827 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -3.087 -4.465 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.191 4.191 4 C 0.027 3.973 5 H 0.070 0.930 6 C -0.544 4.544 7 H 0.099 0.901 8 C -0.122 4.122 9 N -0.516 5.516 10 Si 0.679 3.321 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.179 1.179 14 C 0.049 3.951 15 C -0.198 4.198 16 C -0.120 4.120 17 C -0.141 4.141 18 C -0.101 4.101 19 C -0.203 4.203 20 N -0.175 5.175 21 C -0.136 4.136 22 N -0.023 5.023 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.190 0.810 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.202 -2.834 -3.411 10.214 hybrid contribution -0.107 0.405 -0.030 0.420 sum -9.309 -2.429 -3.441 10.217 Atomic orbital electron populations 1.22002 0.97268 1.01054 1.00743 1.21208 0.92967 0.96894 0.98843 1.21713 1.02687 0.95021 0.99697 1.18616 0.97763 0.84648 0.96320 0.93006 1.20718 0.86997 1.37564 1.09109 0.90054 1.25041 0.94773 0.95531 0.96858 1.69866 1.07923 1.42299 1.31504 0.87295 0.81296 0.81048 0.82460 1.19349 1.20599 1.17907 1.21412 0.92666 0.98131 0.82915 1.20481 1.07127 0.95003 0.97187 1.21008 0.98387 0.94565 0.98012 1.20206 1.04609 0.99762 0.89493 1.19742 1.07905 0.85457 0.97014 1.22323 1.11620 0.98962 0.87354 1.69928 1.14924 0.99455 1.33222 1.24690 1.09757 1.01244 0.77947 1.42906 1.41240 1.10634 1.07499 0.93522 0.93389 0.93168 0.91416 0.90901 0.94451 0.93707 0.92081 0.83930 0.85586 0.84754 0.81030 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.93 37.15 0.33 -2.08 16 2 C -0.08 -1.45 2.09 -90.63 -0.19 -1.63 16 3 C -0.13 -2.41 8.79 37.15 0.33 -2.08 16 4 C 0.05 0.98 1.41 -92.92 -0.13 0.85 16 5 H 0.05 1.14 3.78 -51.93 -0.20 0.95 16 6 C -0.51 -12.81 7.54 -34.44 -0.26 -13.07 16 7 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 9 N -0.88 -25.22 13.96 55.43 0.77 -24.45 16 10 Si 0.85 19.66 25.51 -169.99 -4.34 15.33 16 11 H -0.27 -6.11 6.35 56.52 0.36 -5.75 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.25 -5.47 5.55 56.52 0.31 -5.16 16 14 C 0.15 3.10 4.97 -81.52 -0.40 2.70 16 15 C -0.18 -3.15 8.22 -39.87 -0.33 -3.48 16 16 C -0.10 -1.51 10.07 -39.45 -0.40 -1.91 16 17 C -0.12 -1.91 10.11 -39.39 -0.40 -2.31 16 18 C 0.01 0.16 6.80 -84.09 -0.57 -0.41 16 19 C -0.05 -0.91 12.02 -16.96 -0.20 -1.11 16 20 N -0.46 -9.78 11.19 -13.95 -0.16 -9.94 16 21 C 0.14 3.03 12.11 -90.04 -1.09 1.94 16 22 N -0.35 -7.47 2.94 -58.24 -0.17 -7.64 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.79 6.66 -51.92 -0.35 0.44 16 26 H 0.07 1.18 6.32 -51.93 -0.33 0.85 16 27 H 0.07 1.44 7.34 -51.93 -0.38 1.06 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.83 7.00 -51.93 -0.36 0.46 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.14 2.31 6.13 -52.49 -0.32 1.99 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 35 H 0.20 4.24 5.16 -52.49 -0.27 3.97 16 LS Contribution 278.50 15.07 4.20 4.20 Total: -1.00 -28.89 278.50 -7.54 -36.43 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.43 Total: 6.57 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.41 Total: -20.50 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.45 Total: -42.02 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.34 Total: 15.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.89 -7.54 -36.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.368 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds