Wall clock time and date at job start Mon Mar 30 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.50701 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.30088 * 124.98222 * 270.33519 * 4 3 2 6 6 C 1.35900 * 109.73547 * 180.12532 * 5 4 3 7 7 C 1.39674 * 133.49500 * 179.87794 * 6 5 4 8 8 C 1.37717 * 119.77593 * 179.68527 * 7 6 5 9 9 C 1.50696 * 119.74208 * 179.97438 * 8 7 6 10 10 C 1.38725 * 120.51465 * 359.97438 * 8 7 6 11 11 C 1.37955 * 120.43767 * 0.02562 * 10 8 7 12 12 C 1.38713 * 119.83449 * 359.97438 * 11 10 8 13 13 N 1.36538 * 124.98224 * 89.99301 * 4 3 2 14 14 C 1.37319 * 126.39626 * 0.02562 * 13 4 3 15 15 H 1.07997 * 120.00152 * 33.73339 * 14 13 4 16 16 C 1.38908 * 119.99718 * 213.73320 * 14 13 4 17 17 N 1.31385 * 120.00128 * 20.23666 * 16 14 13 18 18 Si 1.86803 * 120.00098 * 200.22784 * 16 14 13 19 19 H 1.48504 * 109.46765 * 60.00334 * 18 16 14 20 20 H 1.48499 * 109.47349 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46979 * 300.00556 * 18 16 14 22 22 H 1.09000 * 109.47477 * 300.00053 * 1 2 3 23 23 H 1.08994 * 109.47442 * 60.00259 * 1 2 3 24 24 H 1.09006 * 109.47070 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47477 * 239.99947 * 2 1 3 26 26 H 1.09007 * 109.47327 * 119.99447 * 2 1 3 27 27 H 1.08993 * 109.47365 * 59.99667 * 3 2 1 28 28 H 1.08999 * 109.46889 * 299.99705 * 3 2 1 29 29 H 1.08007 * 120.11605 * 359.65720 * 7 6 5 30 30 H 1.08999 * 109.47277 * 89.99947 * 9 8 7 31 31 H 1.09005 * 109.46793 * 209.99240 * 9 8 7 32 32 H 1.08996 * 109.47627 * 329.99584 * 9 8 7 33 33 H 1.08005 * 119.78041 * 180.02562 * 10 8 7 34 34 H 1.08004 * 120.08715 * 180.02562 * 11 10 8 35 35 H 0.96995 * 120.00255 * 178.31414 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2932 1.4362 1.0649 6 6 5.6042 1.4411 0.7070 7 6 6.7985 1.4402 1.4312 8 6 8.0031 1.4399 0.7638 9 6 9.2912 1.4395 1.5460 10 6 8.0401 1.4401 -0.6230 11 6 6.8697 1.4410 -1.3533 12 6 5.6472 1.4413 -0.6977 13 7 4.3293 1.4426 -1.1197 14 6 3.8902 1.4431 -2.4208 15 1 2.9808 1.9629 -2.6836 16 6 4.6159 0.7751 -3.3989 17 7 5.4680 -0.1650 -3.0576 18 14 4.3802 1.2131 -5.1994 19 1 4.7247 2.6421 -5.4104 20 1 5.2638 0.3617 -6.0358 21 1 2.9642 0.9833 -5.5835 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 6.7774 1.4401 2.5111 30 1 9.6015 0.4118 1.7345 31 1 10.0639 1.9531 0.9738 32 1 9.1401 1.9533 2.4953 33 1 8.9914 1.4395 -1.1343 34 1 6.9050 1.4407 -2.4327 35 1 5.9567 -0.6483 -3.7420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259848876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:00 Heat of formation + Delta-G solvation = 43.118908 kcal Electronic energy + Delta-G solvation = -17456.128517 eV Core-core repulsion = 14839.629903 eV Total energy + Delta-G solvation = -2616.498614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.74 seconds Orbital eigenvalues (eV) -40.74414 -36.73813 -34.35052 -34.01865 -31.18694 -30.83339 -28.84336 -27.21601 -25.57250 -24.45176 -21.66314 -20.64382 -20.52670 -19.09182 -17.66183 -15.98207 -15.40836 -14.66591 -14.42457 -14.12027 -14.06283 -13.35159 -13.00224 -12.87487 -12.82942 -12.46647 -11.95631 -11.71831 -11.58414 -11.33608 -11.26134 -10.89376 -10.83090 -10.76131 -10.75194 -10.31867 -10.12731 -10.02118 -9.45797 -8.83871 -8.62398 -7.12717 -6.86394 -6.64770 -4.49400 2.16737 2.71622 2.98113 3.01274 3.03709 3.77113 4.03393 4.61597 4.69700 5.07353 5.22369 5.52713 5.56348 5.67139 5.75694 5.91129 6.00849 6.08716 6.15084 6.19339 6.25623 6.27814 6.33488 6.38645 6.63755 6.71609 6.82074 6.82784 6.89839 6.97326 7.10418 7.25725 7.58753 7.66714 7.90413 8.10492 8.20000 8.64566 9.26019 9.43568 10.21431 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.010734 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.804221 B = 2607.949318 C = 4146.196061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.020 4.020 4 C 0.214 3.786 5 N -0.532 5.532 6 C 0.030 3.970 7 C -0.088 4.088 8 C -0.118 4.118 9 C -0.097 4.097 10 C -0.154 4.154 11 C -0.041 4.041 12 C 0.044 3.956 13 N -0.285 5.285 14 C -0.360 4.360 15 H 0.108 0.892 16 C 0.055 3.945 17 N -0.821 5.821 18 Si 0.926 3.074 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.266 1.266 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 1.414 1.256 2.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.059 4.059 4 C -0.047 4.047 5 N -0.255 5.255 6 C -0.094 4.094 7 C -0.108 4.108 8 C -0.120 4.120 9 C -0.153 4.153 10 C -0.175 4.175 11 C -0.061 4.061 12 C -0.072 4.072 13 N 0.044 4.956 14 C -0.488 4.488 15 H 0.125 0.875 16 C -0.158 4.158 17 N -0.450 5.450 18 Si 0.750 3.250 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.191 1.191 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.260 1.251 1.813 2.538 hybrid contribution 0.269 -0.088 -1.864 1.885 sum -0.991 1.163 -0.051 1.529 Atomic orbital electron populations 1.21750 0.96145 1.01142 1.01382 1.21416 0.94735 0.96426 1.02820 1.19803 0.86079 0.97633 1.02376 1.23191 0.94677 1.04864 0.82009 1.70145 1.00644 1.26701 1.27985 1.18863 0.91778 1.07700 0.91030 1.19678 0.89201 1.04216 0.97715 1.19251 0.93803 1.05330 0.93659 1.20577 0.94826 1.01011 0.98933 1.20431 0.96585 1.07508 0.92990 1.20018 0.89195 0.97701 0.99178 1.18667 0.86288 1.08640 0.93585 1.41149 1.03006 1.45752 1.05655 1.19561 1.12516 1.35818 0.80906 0.87466 1.25537 0.95461 0.93359 1.01412 1.70044 1.22919 1.16052 1.35937 0.86018 0.79159 0.79361 0.80500 1.19026 1.20212 1.19075 0.93013 0.92864 0.93096 0.91342 0.91971 0.90469 0.90753 0.87514 0.92485 0.92601 0.92626 0.87559 0.86693 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.15 0.37 -1.64 16 2 C -0.12 -2.05 5.92 -26.73 -0.16 -2.20 16 3 C -0.02 -0.38 5.49 -27.88 -0.15 -0.53 16 4 C 0.21 5.26 7.08 -154.37 -1.09 4.16 16 5 N -0.53 -13.69 11.27 -8.11 -0.09 -13.78 16 6 C 0.03 0.78 7.22 -84.66 -0.61 0.17 16 7 C -0.09 -1.99 9.73 -39.24 -0.38 -2.37 16 8 C -0.12 -2.40 5.88 -104.63 -0.61 -3.01 16 9 C -0.10 -1.49 10.00 36.00 0.36 -1.13 16 10 C -0.15 -3.31 9.67 -39.50 -0.38 -3.69 16 11 C -0.04 -1.01 8.57 -39.51 -0.34 -1.34 16 12 C 0.04 1.17 6.15 -83.86 -0.52 0.65 16 13 N -0.29 -7.54 2.86 -56.65 -0.16 -7.70 16 14 C -0.36 -9.14 9.48 -14.85 -0.14 -9.29 16 15 H 0.11 2.54 7.36 -52.49 -0.39 2.15 16 16 C 0.06 1.35 4.53 -17.49 -0.08 1.28 16 17 N -0.82 -21.29 10.61 55.49 0.59 -20.71 16 18 Si 0.93 18.55 29.60 -169.99 -5.03 13.51 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.36 7.39 -51.93 -0.38 0.98 16 29 H 0.11 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.12 2.88 6.26 -52.48 -0.33 2.55 16 35 H 0.28 6.78 8.31 -40.82 -0.34 6.45 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -29.28 293.89 -8.89 -38.17 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.88 Total: 5.02 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.74 Total: -18.94 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.34 Total: -42.19 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.28 -8.89 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.290 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.74 seconds