Wall clock time and date at job start Mon Mar 30 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.50701 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.30088 * 124.98222 * 270.33519 * 4 3 2 6 6 C 1.35900 * 109.73547 * 180.12532 * 5 4 3 7 7 C 1.39674 * 133.49500 * 179.87794 * 6 5 4 8 8 C 1.37717 * 119.77593 * 179.68527 * 7 6 5 9 9 C 1.50696 * 119.74208 * 179.97438 * 8 7 6 10 10 C 1.38725 * 120.51465 * 359.97438 * 8 7 6 11 11 C 1.37955 * 120.43767 * 0.02562 * 10 8 7 12 12 C 1.38713 * 119.83449 * 359.97438 * 11 10 8 13 13 N 1.36538 * 124.98224 * 89.99301 * 4 3 2 14 14 C 1.37319 * 126.39626 * 0.02562 * 13 4 3 15 15 H 1.07997 * 120.00152 * 33.73339 * 14 13 4 16 16 C 1.38908 * 119.99718 * 213.73320 * 14 13 4 17 17 N 1.31385 * 120.00128 * 20.23666 * 16 14 13 18 18 Si 1.86803 * 120.00098 * 200.22784 * 16 14 13 19 19 H 1.48504 * 109.46765 * 60.00334 * 18 16 14 20 20 H 1.48499 * 109.47349 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46979 * 300.00556 * 18 16 14 22 22 H 1.09000 * 109.47477 * 300.00053 * 1 2 3 23 23 H 1.08994 * 109.47442 * 60.00259 * 1 2 3 24 24 H 1.09006 * 109.47070 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47477 * 239.99947 * 2 1 3 26 26 H 1.09007 * 109.47327 * 119.99447 * 2 1 3 27 27 H 1.08993 * 109.47365 * 59.99667 * 3 2 1 28 28 H 1.08999 * 109.46889 * 299.99705 * 3 2 1 29 29 H 1.08007 * 120.11605 * 359.65720 * 7 6 5 30 30 H 1.08999 * 109.47277 * 89.99947 * 9 8 7 31 31 H 1.09005 * 109.46793 * 209.99240 * 9 8 7 32 32 H 1.08996 * 109.47627 * 329.99584 * 9 8 7 33 33 H 1.08005 * 119.78041 * 180.02562 * 10 8 7 34 34 H 1.08004 * 120.08715 * 180.02562 * 11 10 8 35 35 H 0.96995 * 120.00255 * 178.31414 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.2932 1.4362 1.0649 6 6 5.6042 1.4411 0.7070 7 6 6.7985 1.4402 1.4312 8 6 8.0031 1.4399 0.7638 9 6 9.2912 1.4395 1.5460 10 6 8.0401 1.4401 -0.6230 11 6 6.8697 1.4410 -1.3533 12 6 5.6472 1.4413 -0.6977 13 7 4.3293 1.4426 -1.1197 14 6 3.8902 1.4431 -2.4208 15 1 2.9808 1.9629 -2.6836 16 6 4.6159 0.7751 -3.3989 17 7 5.4680 -0.1650 -3.0576 18 14 4.3802 1.2131 -5.1994 19 1 4.7247 2.6421 -5.4104 20 1 5.2638 0.3617 -6.0358 21 1 2.9642 0.9833 -5.5835 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 6.7774 1.4401 2.5111 30 1 9.6015 0.4118 1.7345 31 1 10.0639 1.9531 0.9738 32 1 9.1401 1.9533 2.4953 33 1 8.9914 1.4395 -1.1343 34 1 6.9050 1.4407 -2.4327 35 1 5.9567 -0.6483 -3.7420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:55 Heat of formation + Delta-G solvation = 28.322353 kcal Electronic energy + Delta-G solvation = -17456.770144 eV Core-core repulsion = 14839.629903 eV Total energy + Delta-G solvation = -2617.140241 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.58513 -38.44383 -36.06549 -35.61832 -33.07563 -32.42860 -30.53631 -28.68706 -27.36885 -26.09686 -23.22597 -22.38192 -22.22435 -20.88193 -19.50347 -17.73133 -17.26144 -16.37809 -15.97661 -15.87068 -15.63707 -14.89552 -14.66090 -14.54476 -14.26328 -13.92576 -13.61079 -13.22157 -12.99952 -12.94993 -12.78433 -12.45934 -12.35368 -12.31429 -12.16241 -12.00317 -11.67445 -11.57492 -11.28897 -10.69400 -10.53434 -8.95944 -8.69820 -8.48173 -6.43013 0.35663 0.96313 1.33976 1.40710 1.47648 2.06743 2.21256 2.80813 2.87125 3.24844 3.55593 4.09444 4.13709 4.22167 4.24668 4.40317 4.59056 4.62982 4.72847 4.75655 4.91160 4.94970 4.98800 5.02081 5.05417 5.13027 5.21825 5.23208 5.29505 5.37841 5.46413 5.47736 5.80872 5.91101 6.09998 6.25099 6.40006 6.76572 7.38449 7.55192 8.38231 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.010734 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.804221 B = 2607.949318 C = 4146.196061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.018 4.018 4 C 0.200 3.800 5 N -0.553 5.553 6 C -0.001 4.001 7 C -0.104 4.104 8 C -0.107 4.107 9 C -0.093 4.093 10 C -0.147 4.147 11 C -0.068 4.068 12 C 0.008 3.992 13 N -0.305 5.305 14 C -0.386 4.386 15 H 0.116 0.884 16 C 0.016 3.984 17 N -0.856 5.856 18 Si 0.998 3.002 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.253 1.253 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 1.782 1.189 2.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C -0.056 4.056 4 C -0.062 4.062 5 N -0.277 5.277 6 C -0.125 4.125 7 C -0.124 4.124 8 C -0.110 4.110 9 C -0.149 4.149 10 C -0.167 4.167 11 C -0.088 4.088 12 C -0.107 4.107 13 N 0.024 4.976 14 C -0.513 4.513 15 H 0.134 0.866 16 C -0.193 4.193 17 N -0.486 5.486 18 Si 0.818 3.182 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.177 1.177 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.860 1.621 1.764 2.545 hybrid contribution 0.240 -0.211 -1.752 1.781 sum -0.619 1.410 0.012 1.540 Atomic orbital electron populations 1.21682 0.92435 1.02522 1.02763 1.21324 0.97808 0.94814 1.00624 1.20005 0.83102 0.98921 1.03616 1.24150 0.96639 1.03811 0.81566 1.70125 1.01004 1.27894 1.28672 1.19462 0.92839 1.08703 0.91448 1.20075 0.88969 1.04590 0.98792 1.19823 0.95338 1.02199 0.93600 1.20655 0.92344 1.02649 0.99268 1.20890 0.96807 1.05238 0.93780 1.20145 0.89977 0.99806 0.98879 1.19156 0.87101 1.09974 0.94423 1.41424 1.03340 1.46504 1.06311 1.19983 1.13483 1.36628 0.81243 0.86640 1.26494 0.94671 0.92566 1.05584 1.70150 1.23961 1.17121 1.37384 0.84945 0.79681 0.78883 0.74714 1.18818 1.19791 1.17680 0.91171 0.91907 0.91759 0.94400 0.93285 0.88551 0.89926 0.85633 0.90851 0.90332 0.90884 0.84225 0.88002 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.78 16 2 C -0.11 -3.83 5.92 30.59 0.18 -3.65 16 3 C -0.02 -0.68 5.49 29.85 0.16 -0.52 16 4 C 0.20 10.15 7.08 137.76 0.98 11.13 16 5 N -0.55 -29.38 11.27 -179.56 -2.02 -31.40 16 6 C 0.00 -0.08 7.22 39.42 0.28 0.21 16 7 C -0.10 -4.67 9.73 22.49 0.22 -4.45 16 8 C -0.11 -4.16 5.88 -19.87 -0.12 -4.28 16 9 C -0.09 -2.49 10.00 71.23 0.71 -1.78 16 10 C -0.15 -6.14 9.67 22.32 0.22 -5.92 16 11 C -0.07 -3.42 8.57 22.32 0.19 -3.22 16 12 C 0.01 0.45 6.15 38.78 0.24 0.69 16 13 N -0.30 -16.71 2.86 -333.13 -0.95 -17.67 16 14 C -0.39 -20.20 9.48 83.99 0.80 -19.40 16 15 H 0.12 5.59 7.36 -2.91 -0.02 5.57 16 16 C 0.02 0.81 4.53 84.92 0.38 1.19 16 17 N -0.86 -45.77 10.61 21.65 0.23 -45.55 16 18 Si 1.00 38.22 29.60 68.60 2.03 40.25 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.08 3.03 7.39 -2.39 -0.02 3.01 16 29 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.80 8.08 -2.38 -0.02 1.78 16 32 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 33 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.10 5.29 6.26 -2.91 -0.02 5.27 16 35 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -66.26 293.89 5.32 -60.95 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 1.07 Total: 26.20 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.96 Total: -32.78 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -2.75 Total: -94.61 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -66.26 5.32 -60.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.269 kcal (2) G-P(sol) polarization free energy of solvation -66.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds