Wall clock time and date at job start Mon Mar 30 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37789 * 120.11369 * 2 1 4 4 C 1.38786 * 120.66955 * 180.25603 * 3 2 1 5 5 C 1.50702 * 119.73855 * 179.70063 * 4 3 2 6 6 H 1.09002 * 109.46812 * 0.02562 * 5 4 3 7 7 C 1.50696 * 109.47169 * 120.00013 * 5 4 3 8 8 H 1.07998 * 119.99927 * 5.44019 * 7 5 4 9 9 C 1.37878 * 119.99938 * 185.44423 * 7 5 4 10 10 N 1.31515 * 119.99975 * 9.45308 * 9 7 5 11 11 Si 1.86797 * 119.99849 * 189.45281 * 9 7 5 12 12 H 1.48489 * 109.47264 * 84.99288 * 11 9 7 13 13 H 1.48507 * 109.47104 * 204.99544 * 11 9 7 14 14 H 1.48499 * 109.47064 * 324.99095 * 11 9 7 15 15 C 1.52999 * 109.46972 * 240.00181 * 5 4 3 16 16 N 1.46903 * 109.47382 * 63.59990 * 15 5 4 17 17 C 1.36666 * 120.52378 * 359.44326 * 4 3 2 18 18 C 1.39587 * 119.76512 * 0.54686 * 17 4 3 19 19 C 1.46492 * 134.03533 * 179.74709 * 18 17 4 20 20 C 1.34235 * 107.00003 * 179.97438 * 19 18 17 21 21 N 1.36830 * 109.93787 * 0.02562 * 20 19 18 22 22 H 0.97002 * 125.06465 * 180.02562 * 21 20 19 23 23 C 1.37692 * 109.87508 * 359.97438 * 21 20 19 24 24 H 1.09005 * 109.47386 * 90.00053 * 1 2 3 25 25 H 1.09003 * 109.47541 * 210.00064 * 1 2 3 26 26 H 1.09004 * 109.47088 * 329.99789 * 1 2 3 27 27 H 1.07998 * 119.66392 * 359.97438 * 3 2 1 28 28 H 0.97001 * 119.99648 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.47058 * 183.60020 * 15 5 4 30 30 H 1.09001 * 109.47427 * 303.59915 * 15 5 4 31 31 H 1.00901 * 110.99936 * 180.02562 * 16 15 5 32 32 H 1.00902 * 110.99745 * 303.95505 * 16 15 5 33 33 H 1.08003 * 120.11612 * 180.27799 * 17 4 3 34 34 H 1.08002 * 126.49979 * 359.95769 * 19 18 17 35 35 H 1.07995 * 125.02917 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2054 -0.0053 5 6 4.3209 2.5211 -0.0121 6 1 3.6007 3.3394 -0.0113 7 6 5.1907 2.6170 1.2148 8 1 5.2778 1.7725 1.8823 9 6 5.8753 3.7829 1.4851 10 7 5.6291 4.8677 0.7836 11 14 7.1526 3.8215 2.8476 12 1 8.4559 3.3465 2.3179 13 1 7.2991 5.2114 3.3495 14 1 6.7179 2.9373 3.9587 15 6 5.1944 2.6110 -1.2649 16 7 4.3395 2.6043 -2.4596 17 6 4.2916 0.0349 0.0008 18 6 3.6116 -1.1841 0.0009 19 6 4.0353 -2.5864 0.0017 20 6 2.9200 -3.3334 0.0019 21 7 1.8165 -2.5243 0.0008 22 1 0.8976 -2.8350 0.0011 23 6 2.2047 -1.2032 0.0003 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6547 2.1251 -0.0004 28 1 6.1110 5.6878 0.9735 29 1 5.7742 3.5336 -1.2382 30 1 5.8714 1.7573 -1.2979 31 1 4.8934 2.6624 -3.3009 32 1 3.7448 1.7892 -2.4740 33 1 5.3715 0.0531 0.0011 34 1 5.0522 -2.9503 0.0017 35 1 2.8971 -4.4131 0.0021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:30 Heat of formation + Delta-G solvation = 42.957873 kcal Electronic energy + Delta-G solvation = -17289.103604 eV Core-core repulsion = 14672.598007 eV Total energy + Delta-G solvation = -2616.505597 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77246 -37.30311 -34.65469 -32.51099 -32.14277 -30.00480 -28.70342 -27.33830 -25.99096 -23.76702 -22.00769 -21.24370 -19.96499 -19.04718 -17.42392 -16.20131 -15.61771 -14.86371 -14.55956 -14.18477 -14.02512 -13.72873 -13.30001 -12.92726 -12.85740 -12.77604 -12.06192 -11.99449 -11.88757 -11.58506 -11.09247 -10.92773 -10.63198 -10.42771 -10.32102 -9.94630 -9.29744 -9.13866 -9.07153 -8.37775 -7.62086 -7.45089 -7.00501 -5.98776 -4.01894 1.70488 2.36540 3.11381 3.33653 3.40244 3.43924 3.49102 4.44156 4.62742 5.11337 5.23215 5.30238 5.37232 5.57597 5.71476 5.78246 5.80833 5.97279 6.06395 6.11518 6.28717 6.49857 6.54871 6.67060 6.83320 6.93830 7.18988 7.20739 7.29470 7.44573 7.65377 7.82528 7.90173 7.95465 8.02258 8.22352 8.38874 8.52173 9.03008 9.61114 11.08582 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.006962 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.531185 B = 4020.812751 C = 4341.519583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 C -0.089 4.089 4 C -0.055 4.055 5 C 0.084 3.916 6 H 0.049 0.951 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.882 5.882 11 Si 0.887 3.113 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.076 3.924 16 N -0.852 5.852 17 C -0.079 4.079 18 C -0.108 4.108 19 C -0.206 4.206 20 C 0.033 3.967 21 N -0.602 5.602 22 H 0.407 0.593 23 C 0.080 3.920 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.261 0.739 29 H 0.084 0.916 30 H 0.001 0.999 31 H 0.319 0.681 32 H 0.325 0.675 33 H 0.118 0.882 34 H 0.138 0.862 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -12.787 -3.248 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C -0.108 4.108 4 C -0.056 4.056 5 C 0.065 3.935 6 H 0.067 0.933 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.520 5.520 11 Si 0.715 3.285 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.054 4.054 16 N -0.379 5.379 17 C -0.097 4.097 18 C -0.112 4.112 19 C -0.232 4.232 20 C -0.093 4.093 21 N -0.206 5.206 22 H 0.242 0.758 23 C -0.026 4.026 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.138 0.862 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.020 0.980 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.221 -11.961 -2.953 14.281 hybrid contribution 0.923 -1.065 0.578 1.523 sum -6.298 -13.027 -2.375 14.663 Atomic orbital electron populations 1.20603 0.92223 1.01827 1.01357 1.18757 0.94617 0.90363 1.07932 1.20802 0.94215 0.95799 0.99949 1.20073 0.92797 0.96928 0.95802 1.17834 0.94148 0.88757 0.92740 0.93288 1.21114 1.27214 0.98911 1.07769 0.92339 1.24984 0.97097 0.95387 0.96299 1.69999 1.40647 1.00415 1.40941 0.86683 0.82300 0.77100 0.82433 1.20603 1.21331 1.19938 1.22001 0.94509 0.99814 0.89049 1.58954 1.26737 1.47359 1.04894 1.20170 0.99603 0.89693 1.00269 1.19246 0.91937 0.93500 1.06491 1.21659 0.97710 0.91419 1.12405 1.21593 0.85916 0.95791 1.05956 1.41620 1.07818 1.04345 1.66801 0.75769 1.17966 0.93828 0.84085 1.06675 0.92061 0.93254 0.91467 0.86171 0.92943 0.89732 0.98042 0.87082 0.86371 0.86419 0.84370 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.00 0.36 -0.98 16 2 C -0.11 -1.95 5.89 -104.47 -0.62 -2.56 16 3 C -0.09 -1.74 9.29 -39.54 -0.37 -2.11 16 4 C -0.05 -1.20 3.70 -104.99 -0.39 -1.59 16 5 C 0.08 2.10 2.03 -92.92 -0.19 1.91 16 6 H 0.05 1.37 7.80 -51.93 -0.41 0.96 16 7 C -0.51 -13.99 8.16 -34.44 -0.28 -14.27 16 8 H 0.06 1.62 7.53 -52.49 -0.40 1.22 16 9 C 0.06 1.78 5.17 -17.82 -0.09 1.69 16 10 N -0.88 -25.29 12.16 55.43 0.67 -24.62 16 11 Si 0.89 21.33 29.55 -169.99 -5.02 16.30 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.08 1.80 6.01 -3.82 -0.02 1.77 16 16 N -0.85 -17.27 9.62 -10.37 -0.10 -17.37 16 17 C -0.08 -1.64 8.56 -39.65 -0.34 -1.98 16 18 C -0.11 -2.02 6.37 -105.14 -0.67 -2.69 16 19 C -0.21 -3.17 11.08 -37.67 -0.42 -3.59 16 20 C 0.03 0.42 11.81 -16.73 -0.20 0.22 16 21 N -0.60 -7.95 6.07 -10.65 -0.06 -8.02 16 22 H 0.41 4.01 8.87 -40.82 -0.36 3.65 16 23 C 0.08 1.36 6.95 -83.99 -0.58 0.78 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.55 7.99 -51.93 -0.42 0.14 16 26 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.12 2.30 7.93 -52.49 -0.42 1.88 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.08 2.23 6.83 -51.93 -0.35 1.88 16 30 H 0.00 0.03 7.25 -51.93 -0.38 -0.34 16 31 H 0.32 5.65 9.08 -39.29 -0.36 5.30 16 32 H 0.33 6.29 8.01 -39.29 -0.31 5.97 16 33 H 0.12 2.51 7.51 -52.48 -0.39 2.12 16 34 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 293.21 15.07 4.42 4.42 Total: -1.00 -30.41 293.21 -8.51 -38.92 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.61 Total: 13.76 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -3.80 Total: -23.40 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.51 Total: -50.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.41 -8.51 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.880 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds