Wall clock time and date at job start Mon Mar 30 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37789 * 120.11369 * 2 1 4 4 C 1.38786 * 120.66955 * 180.25603 * 3 2 1 5 5 C 1.50702 * 119.73855 * 179.70063 * 4 3 2 6 6 H 1.09002 * 109.46812 * 0.02562 * 5 4 3 7 7 C 1.50696 * 109.47169 * 120.00013 * 5 4 3 8 8 H 1.07998 * 119.99927 * 5.44019 * 7 5 4 9 9 C 1.37878 * 119.99938 * 185.44423 * 7 5 4 10 10 N 1.31515 * 119.99975 * 9.45308 * 9 7 5 11 11 Si 1.86797 * 119.99849 * 189.45281 * 9 7 5 12 12 H 1.48489 * 109.47264 * 84.99288 * 11 9 7 13 13 H 1.48507 * 109.47104 * 204.99544 * 11 9 7 14 14 H 1.48499 * 109.47064 * 324.99095 * 11 9 7 15 15 C 1.52999 * 109.46972 * 240.00181 * 5 4 3 16 16 N 1.46903 * 109.47382 * 63.59990 * 15 5 4 17 17 C 1.36666 * 120.52378 * 359.44326 * 4 3 2 18 18 C 1.39587 * 119.76512 * 0.54686 * 17 4 3 19 19 C 1.46492 * 134.03533 * 179.74709 * 18 17 4 20 20 C 1.34235 * 107.00003 * 179.97438 * 19 18 17 21 21 N 1.36830 * 109.93787 * 0.02562 * 20 19 18 22 22 H 0.97002 * 125.06465 * 180.02562 * 21 20 19 23 23 C 1.37692 * 109.87508 * 359.97438 * 21 20 19 24 24 H 1.09005 * 109.47386 * 90.00053 * 1 2 3 25 25 H 1.09003 * 109.47541 * 210.00064 * 1 2 3 26 26 H 1.09004 * 109.47088 * 329.99789 * 1 2 3 27 27 H 1.07998 * 119.66392 * 359.97438 * 3 2 1 28 28 H 0.97001 * 119.99648 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.47058 * 183.60020 * 15 5 4 30 30 H 1.09001 * 109.47427 * 303.59915 * 15 5 4 31 31 H 1.00901 * 110.99936 * 180.02562 * 16 15 5 32 32 H 1.00902 * 110.99745 * 303.95505 * 16 15 5 33 33 H 1.08003 * 120.11612 * 180.27799 * 17 4 3 34 34 H 1.08002 * 126.49979 * 359.95769 * 19 18 17 35 35 H 1.07995 * 125.02917 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2054 -0.0053 5 6 4.3209 2.5211 -0.0121 6 1 3.6007 3.3394 -0.0113 7 6 5.1907 2.6170 1.2148 8 1 5.2778 1.7725 1.8823 9 6 5.8753 3.7829 1.4851 10 7 5.6291 4.8677 0.7836 11 14 7.1526 3.8215 2.8476 12 1 8.4559 3.3465 2.3179 13 1 7.2991 5.2114 3.3495 14 1 6.7179 2.9373 3.9587 15 6 5.1944 2.6110 -1.2649 16 7 4.3395 2.6043 -2.4596 17 6 4.2916 0.0349 0.0008 18 6 3.6116 -1.1841 0.0009 19 6 4.0353 -2.5864 0.0017 20 6 2.9200 -3.3334 0.0019 21 7 1.8165 -2.5243 0.0008 22 1 0.8976 -2.8350 0.0011 23 6 2.2047 -1.2032 0.0003 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6547 2.1251 -0.0004 28 1 6.1110 5.6878 0.9735 29 1 5.7742 3.5336 -1.2382 30 1 5.8714 1.7573 -1.2979 31 1 4.8934 2.6624 -3.3009 32 1 3.7448 1.7892 -2.4740 33 1 5.3715 0.0531 0.0011 34 1 5.0522 -2.9503 0.0017 35 1 2.8971 -4.4131 0.0021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:29 Heat of formation + Delta-G solvation = 22.711263 kcal Electronic energy + Delta-G solvation = -17289.981563 eV Core-core repulsion = 14672.598007 eV Total energy + Delta-G solvation = -2617.383556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03705 -38.84831 -36.30105 -34.22555 -33.84258 -31.55215 -29.94609 -28.96763 -27.36084 -25.79380 -23.59534 -22.59174 -21.13799 -20.73066 -18.85720 -18.13510 -17.03611 -16.68541 -16.31005 -15.55870 -15.45566 -15.40616 -14.90519 -14.15186 -14.04272 -13.96897 -13.86670 -13.39560 -13.30808 -13.03136 -12.89441 -12.81821 -12.40302 -12.31681 -11.94175 -11.59586 -11.12066 -11.10768 -10.50489 -10.33403 -9.37947 -8.85851 -8.36485 -8.09160 -6.21676 0.35279 0.89216 1.40516 1.41385 1.51279 1.94518 2.40196 2.43488 3.09799 3.18063 3.94084 4.06351 4.09553 4.21291 4.36642 4.50967 4.57683 4.69539 4.82768 4.85417 4.91458 4.97550 5.04111 5.14076 5.27405 5.42285 5.52727 5.65396 5.71862 5.88355 5.93020 5.97911 6.19452 6.28364 6.44597 6.56916 6.77221 6.89285 6.92297 7.44663 8.95346 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.006962 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.531185 B = 4020.812751 C = 4341.519583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.072 4.072 5 C 0.090 3.910 6 H 0.008 0.992 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.018 3.982 10 N -0.912 5.912 11 Si 0.949 3.051 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.092 3.908 16 N -0.848 5.848 17 C -0.100 4.100 18 C -0.127 4.127 19 C -0.245 4.245 20 C 0.073 3.927 21 N -0.585 5.585 22 H 0.428 0.572 23 C 0.068 3.932 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.262 0.738 29 H 0.052 0.948 30 H 0.000 1.000 31 H 0.336 0.664 32 H 0.334 0.666 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 -15.979 -3.134 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.073 4.073 5 C 0.071 3.929 6 H 0.026 0.974 7 C -0.565 4.565 8 H 0.066 0.934 9 C -0.181 4.181 10 N -0.551 5.551 11 Si 0.775 3.225 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.039 4.039 16 N -0.377 5.377 17 C -0.119 4.119 18 C -0.131 4.131 19 C -0.270 4.270 20 C -0.053 4.053 21 N -0.190 5.190 22 H 0.267 0.733 23 C -0.038 4.038 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.167 0.833 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.682 -15.175 -2.853 17.714 hybrid contribution 1.278 -0.227 0.508 1.393 sum -7.404 -15.402 -2.345 17.249 Atomic orbital electron populations 1.20693 0.88928 1.03276 1.02960 1.19076 0.96843 0.89366 1.04629 1.20755 0.93417 0.96964 1.02682 1.19760 0.93769 0.95523 0.98224 1.17593 0.93240 0.89496 0.92565 0.97364 1.21377 1.27878 0.98630 1.08621 0.93402 1.25721 0.98789 0.94979 0.98648 1.70118 1.41591 1.00859 1.42514 0.85704 0.79930 0.77219 0.79671 1.19786 1.20708 1.19674 1.21613 0.94285 0.97904 0.90077 1.58785 1.26497 1.47906 1.04543 1.19985 0.98619 0.90768 1.02501 1.19580 0.93214 0.94267 1.06066 1.21925 0.99691 0.90011 1.15383 1.22376 0.84279 0.97784 1.00910 1.41672 1.09387 1.02757 1.65167 0.73253 1.18025 0.93233 0.85761 1.06784 0.90199 0.90661 0.91222 0.86851 0.92894 0.92958 0.98141 0.85190 0.85399 0.88483 0.83292 0.76763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.33 10.02 71.23 0.71 -1.62 16 2 C -0.10 -3.17 5.89 -19.77 -0.12 -3.28 16 3 C -0.12 -4.82 9.29 22.29 0.21 -4.61 16 4 C -0.07 -3.29 3.70 -20.10 -0.07 -3.36 16 5 C 0.09 4.79 2.03 -12.29 -0.02 4.76 16 6 H 0.01 0.49 7.80 -2.39 -0.02 0.47 16 7 C -0.53 -30.36 8.16 25.60 0.21 -30.15 16 8 H 0.05 2.79 7.53 -2.91 -0.02 2.77 16 9 C 0.02 1.04 5.17 84.65 0.44 1.48 16 10 N -0.91 -54.54 12.16 21.45 0.26 -54.28 16 11 Si 0.95 44.99 29.55 68.60 2.03 47.01 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.09 4.58 6.01 86.30 0.52 5.10 16 16 N -0.85 -35.57 9.62 -186.71 -1.80 -37.37 16 17 C -0.10 -4.35 8.56 22.23 0.19 -4.16 16 18 C -0.13 -4.67 6.37 -20.20 -0.13 -4.80 16 19 C -0.25 -6.95 11.08 23.51 0.26 -6.69 16 20 C 0.07 1.47 11.81 83.00 0.98 2.45 16 21 N -0.58 -12.70 6.07 -187.61 -1.14 -13.84 16 22 H 0.43 5.95 8.87 -92.71 -0.82 5.13 16 23 C 0.07 2.18 6.95 39.03 0.27 2.45 16 24 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.07 1.34 7.99 -2.39 -0.02 1.32 16 26 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 27 H 0.11 4.59 7.93 -2.91 -0.02 4.56 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.05 2.92 6.83 -2.39 -0.02 2.91 16 30 H 0.00 0.02 7.25 -2.39 -0.02 0.00 16 31 H 0.34 12.09 9.08 -89.69 -0.81 11.28 16 32 H 0.33 13.27 8.01 -89.69 -0.72 12.55 16 33 H 0.10 4.45 7.51 -2.91 -0.02 4.43 16 34 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 35 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -70.18 293.21 1.57 -68.61 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -1.23 Total: 32.31 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 3.44 Total: -42.44 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -2.67 Total: -105.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.18 1.57 -68.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.324 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds