Wall clock time and date at job start Mon Mar 30 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47214 * 2 1 4 4 N 1.30111 * 124.94793 * 270.21590 * 3 2 1 5 5 C 1.35789 * 109.64580 * 180.27149 * 4 3 2 6 6 C 1.40544 * 106.92520 * 359.71911 * 5 4 3 7 7 C 1.38786 * 119.83393 * 180.02562 * 6 5 4 8 8 C 1.37897 * 119.69181 * 0.02562 * 7 6 5 9 9 C 1.38726 * 120.44972 * 0.02562 * 8 7 6 10 10 C 1.36640 * 120.66928 * 359.97438 * 9 8 7 11 11 C 1.50710 * 120.05524 * 179.97438 * 10 9 8 12 12 N 1.36040 * 124.94516 * 90.00057 * 3 2 1 13 13 C 1.46499 * 126.35080 * 0.02562 * 12 3 2 14 14 C 1.50701 * 109.46992 * 269.68766 * 13 12 3 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.09001 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47053 * 300.00037 * 1 2 3 24 24 H 1.08998 * 109.47182 * 59.99884 * 1 2 3 25 25 H 1.08995 * 109.46858 * 239.99718 * 2 1 3 26 26 H 1.09010 * 109.46835 * 120.00277 * 2 1 3 27 27 H 1.07999 * 120.15581 * 179.97438 * 7 6 5 28 28 H 1.08002 * 119.77323 * 179.97438 * 8 7 6 29 29 H 1.08001 * 119.66509 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.46903 * 270.02236 * 11 10 9 31 31 H 1.08992 * 109.47108 * 30.02192 * 11 10 9 32 32 H 1.08996 * 109.47128 * 150.02382 * 11 10 9 33 33 H 1.09002 * 109.47391 * 149.68756 * 13 12 3 34 34 H 1.09001 * 109.46813 * 29.68813 * 13 12 3 35 35 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2770 2.1247 -1.0665 5 6 2.7206 3.3571 -0.7082 6 6 2.7364 3.3938 0.6967 7 6 3.1506 4.5445 1.3528 8 6 3.5435 5.6446 0.6200 9 6 3.5267 5.6082 -0.7667 10 6 3.1220 4.4840 -1.4296 11 6 3.1086 4.4599 -2.9364 12 7 2.2921 2.1554 1.1151 13 6 2.1360 1.7123 2.5027 14 6 0.7452 2.0404 2.9814 15 1 0.0473 2.5296 2.3182 16 6 0.3635 1.7150 4.2657 17 7 -0.8504 2.0009 4.6832 18 14 1.5705 0.8682 5.4126 19 1 2.3388 1.8916 6.1660 20 1 0.8261 0.0070 6.3662 21 1 2.5060 0.0329 4.6175 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 3.1644 4.5785 2.4321 28 1 3.8657 6.5409 1.1292 29 1 3.8367 6.4773 -1.3280 30 1 2.1381 4.8010 -3.2966 31 1 3.8894 5.1182 -3.3172 32 1 3.2887 3.4430 -3.2851 33 1 2.8663 2.2220 3.1313 34 1 2.2956 0.6355 2.5604 35 1 -1.1188 1.7724 5.5869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:52 Heat of formation + Delta-G solvation = 51.628068 kcal Electronic energy + Delta-G solvation = -17427.666911 eV Core-core repulsion = 14811.537283 eV Total energy + Delta-G solvation = -2616.129629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52606 -37.27213 -34.20387 -33.05418 -32.58853 -31.47303 -28.43372 -27.78419 -26.20519 -23.78246 -22.99446 -21.54148 -20.47869 -18.67996 -17.25443 -16.81315 -16.08002 -15.07172 -14.83534 -14.32319 -13.82109 -13.63140 -13.39416 -13.01760 -12.97786 -12.62850 -12.22430 -11.99472 -11.97194 -11.55231 -11.26350 -11.11148 -10.96193 -10.80586 -10.70090 -10.60843 -10.43093 -9.85947 -9.32114 -9.27970 -8.87908 -7.65355 -7.33118 -6.36380 -4.40878 1.49338 2.10640 3.06552 3.13004 3.15524 3.37538 3.55645 4.11965 4.36706 4.66334 4.91590 5.07010 5.32602 5.43644 5.51182 5.67901 5.72963 5.82813 5.90908 5.94707 5.96411 6.07630 6.12807 6.22453 6.24174 6.34406 6.46810 6.47480 6.78826 6.82937 6.98104 7.12829 7.17727 7.24602 7.46533 7.83441 8.20701 8.56370 8.67912 9.18776 10.75624 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.008073 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.245132 B = 3467.459519 C = 4205.353931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C 0.288 3.712 4 N -0.513 5.513 5 C 0.043 3.957 6 C 0.056 3.944 7 C -0.100 4.100 8 C -0.118 4.118 9 C -0.141 4.141 10 C -0.044 4.044 11 C -0.102 4.102 12 N -0.453 5.453 13 C 0.210 3.790 14 C -0.544 4.544 15 H 0.082 0.918 16 C 0.082 3.918 17 N -0.882 5.882 18 Si 0.871 3.129 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 0.773 -7.728 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C 0.023 3.977 4 N -0.234 5.234 5 C -0.077 4.077 6 C -0.056 4.056 7 C -0.120 4.120 8 C -0.138 4.138 9 C -0.161 4.161 10 C -0.046 4.046 11 C -0.159 4.159 12 N -0.138 5.138 13 C 0.089 3.911 14 C -0.582 4.582 15 H 0.100 0.900 16 C -0.123 4.123 17 N -0.518 5.518 18 Si 0.697 3.303 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.189 1.189 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.306 0.420 -8.215 11.002 hybrid contribution 0.496 -0.070 1.833 1.900 sum 7.802 0.350 -6.382 10.086 Atomic orbital electron populations 1.21750 0.93276 1.01934 1.03710 1.20033 0.97289 0.87152 1.03330 1.23449 0.97234 0.95921 0.81087 1.70304 1.22115 1.03358 1.27580 1.18853 1.04905 0.93602 0.90320 1.18879 1.03570 0.88411 0.94722 1.20014 1.01505 0.90894 0.99631 1.20689 1.01899 0.97437 0.93745 1.20342 1.04244 0.97319 0.94195 1.18682 0.99383 0.91150 0.95358 1.20620 1.01376 1.02575 0.91347 1.45574 1.49710 1.09810 1.08705 1.20063 0.99398 0.96360 0.75231 1.21118 0.95851 1.41793 0.99434 0.90033 1.24807 0.95186 0.94857 0.97441 1.69868 1.17806 1.45798 1.18362 0.86932 0.81520 0.80346 0.81510 1.19670 1.20396 1.18910 0.92199 0.90306 0.92663 0.89450 0.90028 0.86139 0.86055 0.86302 0.91732 0.92269 0.91333 0.94349 0.93483 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.90 37.16 0.37 -2.12 16 2 C -0.04 -0.65 6.23 -27.89 -0.17 -0.83 16 3 C 0.29 5.95 7.11 -154.82 -1.10 4.85 16 4 N -0.51 -10.83 11.27 -8.24 -0.09 -10.93 16 5 C 0.04 0.91 6.90 -84.70 -0.58 0.32 16 6 C 0.06 1.21 6.87 -83.99 -0.58 0.63 16 7 C -0.10 -1.92 10.05 -39.50 -0.40 -2.32 16 8 C -0.12 -1.89 10.03 -39.53 -0.40 -2.29 16 9 C -0.14 -2.19 9.60 -39.98 -0.38 -2.57 16 10 C -0.04 -0.77 5.88 -104.65 -0.61 -1.39 16 11 C -0.10 -1.45 10.02 36.01 0.36 -1.09 16 12 N -0.45 -10.04 2.79 -112.44 -0.31 -10.36 16 13 C 0.21 4.77 4.76 -5.19 -0.02 4.75 16 14 C -0.54 -14.42 9.57 -34.44 -0.33 -14.75 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.88 -25.27 13.96 55.43 0.77 -24.49 16 18 Si 0.87 19.44 27.47 -169.99 -4.67 14.77 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.08 1.60 7.77 -51.93 -0.40 1.19 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.08 1.31 7.01 -51.92 -0.36 0.94 16 27 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.04 0.86 7.57 -51.93 -0.39 0.46 16 34 H 0.05 1.02 6.04 -51.93 -0.31 0.70 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -29.94 296.29 -8.65 -38.59 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.86 Total: 2.67 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.95 Total: -14.72 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.37 Total: -45.78 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.67 Total: 14.77 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.94 -8.65 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.222 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds