Wall clock time and date at job start Mon Mar 30 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47214 * 2 1 4 4 N 1.30111 * 124.94793 * 270.21590 * 3 2 1 5 5 C 1.35789 * 109.64580 * 180.27149 * 4 3 2 6 6 C 1.40544 * 106.92520 * 359.71911 * 5 4 3 7 7 C 1.38786 * 119.83393 * 180.02562 * 6 5 4 8 8 C 1.37897 * 119.69181 * 0.02562 * 7 6 5 9 9 C 1.38726 * 120.44972 * 0.02562 * 8 7 6 10 10 C 1.36640 * 120.66928 * 359.97438 * 9 8 7 11 11 C 1.50710 * 120.05524 * 179.97438 * 10 9 8 12 12 N 1.36040 * 124.94516 * 90.00057 * 3 2 1 13 13 C 1.46499 * 126.35080 * 0.02562 * 12 3 2 14 14 C 1.50701 * 109.46992 * 269.68766 * 13 12 3 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.09001 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47053 * 300.00037 * 1 2 3 24 24 H 1.08998 * 109.47182 * 59.99884 * 1 2 3 25 25 H 1.08995 * 109.46858 * 239.99718 * 2 1 3 26 26 H 1.09010 * 109.46835 * 120.00277 * 2 1 3 27 27 H 1.07999 * 120.15581 * 179.97438 * 7 6 5 28 28 H 1.08002 * 119.77323 * 179.97438 * 8 7 6 29 29 H 1.08001 * 119.66509 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.46903 * 270.02236 * 11 10 9 31 31 H 1.08992 * 109.47108 * 30.02192 * 11 10 9 32 32 H 1.08996 * 109.47128 * 150.02382 * 11 10 9 33 33 H 1.09002 * 109.47391 * 149.68756 * 13 12 3 34 34 H 1.09001 * 109.46813 * 29.68813 * 13 12 3 35 35 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2770 2.1247 -1.0665 5 6 2.7206 3.3571 -0.7082 6 6 2.7364 3.3938 0.6967 7 6 3.1506 4.5445 1.3528 8 6 3.5435 5.6446 0.6200 9 6 3.5267 5.6082 -0.7667 10 6 3.1220 4.4840 -1.4296 11 6 3.1086 4.4599 -2.9364 12 7 2.2921 2.1554 1.1151 13 6 2.1360 1.7123 2.5027 14 6 0.7452 2.0404 2.9814 15 1 0.0473 2.5296 2.3182 16 6 0.3635 1.7150 4.2657 17 7 -0.8504 2.0009 4.6832 18 14 1.5705 0.8682 5.4126 19 1 2.3388 1.8916 6.1660 20 1 0.8261 0.0070 6.3662 21 1 2.5060 0.0329 4.6175 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 3.1644 4.5785 2.4321 28 1 3.8657 6.5409 1.1292 29 1 3.8367 6.4773 -1.3280 30 1 2.1381 4.8010 -3.2966 31 1 3.8894 5.1182 -3.3172 32 1 3.2887 3.4430 -3.2851 33 1 2.8663 2.2220 3.1313 34 1 2.2956 0.6355 2.5604 35 1 -1.1188 1.7724 5.5869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:51 Heat of formation + Delta-G solvation = 34.893759 kcal Electronic energy + Delta-G solvation = -17428.392566 eV Core-core repulsion = 14811.537283 eV Total energy + Delta-G solvation = -2616.855283 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.03116 -38.65268 -35.95699 -34.56711 -34.23121 -32.97967 -29.95125 -29.52011 -27.47919 -25.18134 -24.85996 -23.01080 -21.87107 -20.25840 -19.27752 -18.24780 -17.67579 -16.64375 -16.28149 -16.02600 -15.27635 -15.05948 -14.82653 -14.57925 -14.33796 -14.24617 -13.90370 -13.42533 -13.22759 -13.13797 -12.69519 -12.53015 -12.45497 -12.26796 -12.21307 -12.05202 -11.93635 -11.84129 -10.96200 -10.91898 -10.84324 -9.13387 -8.78408 -8.42968 -6.54124 0.07878 0.69253 1.32002 1.32302 1.42452 1.83384 2.01181 2.22644 2.88943 2.95064 3.25879 3.63080 4.06325 4.12641 4.15864 4.27877 4.35215 4.40321 4.49686 4.53542 4.63584 4.77755 4.82687 4.87820 4.93774 4.95061 5.08897 5.18893 5.26683 5.36865 5.39317 5.61115 5.68708 5.80786 5.96571 6.11250 6.39948 6.50586 7.01232 7.10413 8.73238 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.008073 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.245132 B = 3467.459519 C = 4205.353931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C 0.272 3.728 4 N -0.525 5.525 5 C 0.013 3.987 6 C 0.021 3.979 7 C -0.132 4.132 8 C -0.100 4.100 9 C -0.132 4.132 10 C -0.056 4.056 11 C -0.097 4.097 12 N -0.471 5.471 13 C 0.220 3.780 14 C -0.544 4.544 15 H 0.024 0.976 16 C 0.027 3.973 17 N -0.933 5.933 18 Si 0.944 3.056 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.238 1.238 22 H 0.093 0.907 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 1.007 -8.374 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C 0.007 3.993 4 N -0.246 5.246 5 C -0.106 4.106 6 C -0.089 4.089 7 C -0.153 4.153 8 C -0.120 4.120 9 C -0.152 4.152 10 C -0.057 4.057 11 C -0.154 4.154 12 N -0.157 5.157 13 C 0.099 3.901 14 C -0.582 4.582 15 H 0.043 0.957 16 C -0.174 4.174 17 N -0.572 5.572 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.161 1.161 22 H 0.111 0.889 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.134 0.866 26 H 0.109 0.891 27 H 0.133 0.867 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.628 0.669 -8.902 13.130 hybrid contribution -0.269 0.023 1.913 1.932 sum 9.359 0.693 -6.989 11.701 Atomic orbital electron populations 1.21647 0.93593 1.03272 1.01167 1.20218 0.96812 0.85520 1.05129 1.24165 0.97198 0.97228 0.80710 1.70273 1.22564 1.03907 1.27826 1.19407 1.06103 0.94564 0.90575 1.19414 1.04771 0.88992 0.95726 1.20266 1.03600 0.91634 0.99831 1.21195 0.99131 0.97350 0.94301 1.20869 1.02250 0.97899 0.94171 1.19245 0.98617 0.90644 0.97241 1.20646 1.02913 1.02785 0.89037 1.45590 1.50959 1.10635 1.08516 1.19830 0.96827 0.97248 0.76151 1.21119 0.96900 1.41259 0.98926 0.95723 1.25755 0.97100 0.95405 0.99113 1.70027 1.20354 1.47627 1.19153 0.85772 0.79155 0.79491 0.79021 1.18895 1.19998 1.16098 0.88850 0.94756 0.93141 0.86584 0.89124 0.86666 0.82274 0.81853 0.91147 0.88835 0.92553 0.93657 0.91754 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.90 71.98 0.71 -4.01 16 2 C -0.04 -1.26 6.23 29.85 0.19 -1.08 16 3 C 0.27 11.44 7.11 137.92 0.98 12.42 16 4 N -0.52 -22.49 11.27 -179.97 -2.03 -24.52 16 5 C 0.01 0.53 6.90 39.45 0.27 0.81 16 6 C 0.02 0.95 6.87 38.86 0.27 1.22 16 7 C -0.13 -5.10 10.05 22.32 0.22 -4.87 16 8 C -0.10 -2.98 10.03 22.31 0.22 -2.76 16 9 C -0.13 -3.66 9.60 22.01 0.21 -3.45 16 10 C -0.06 -1.86 5.88 -19.88 -0.12 -1.98 16 11 C -0.10 -2.52 10.02 71.24 0.71 -1.81 16 12 N -0.47 -21.45 2.79 -509.64 -1.42 -22.87 16 13 C 0.22 10.16 4.76 85.63 0.41 10.57 16 14 C -0.54 -30.17 9.57 25.60 0.25 -29.92 16 15 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 16 C 0.03 1.45 5.47 84.66 0.46 1.92 16 17 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 18 Si 0.94 39.85 27.47 68.60 1.88 41.74 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 22 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 23 H 0.03 1.45 7.77 -2.39 -0.02 1.44 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.09 2.81 7.01 -2.38 -0.02 2.79 16 27 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 33 H 0.05 2.01 7.57 -2.39 -0.02 2.00 16 34 H 0.06 2.72 6.04 -2.39 -0.01 2.71 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -69.50 296.29 4.54 -64.96 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.02 Total: 18.90 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.79 Total: -22.95 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -3.15 Total: -102.65 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.88 Total: 41.74 kcal Total: -69.50 4.54 -64.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.858 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds