Wall clock time and date at job start Mon Mar 30 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46898 * 2 1 4 4 C 1.52998 * 109.47127 * 119.99808 * 2 1 3 5 5 H 1.09001 * 109.46799 * 180.14538 * 4 2 1 6 6 C 1.50696 * 109.47272 * 60.14226 * 4 2 1 7 7 H 1.07996 * 120.00434 * 243.55891 * 6 4 2 8 8 C 1.37882 * 119.99693 * 63.56287 * 6 4 2 9 9 N 1.31513 * 119.99915 * 6.52324 * 8 6 4 10 10 Si 1.86794 * 119.99907 * 186.52436 * 8 6 4 11 11 H 1.48495 * 109.47345 * 89.99747 * 10 8 6 12 12 H 1.48504 * 109.47376 * 210.00191 * 10 8 6 13 13 H 1.48504 * 109.47137 * 329.99819 * 10 8 6 14 14 C 1.50701 * 109.46926 * 300.13954 * 4 2 1 15 15 C 1.35887 * 120.40739 * 68.08153 * 14 4 2 16 16 C 1.40819 * 119.76997 * 180.02562 * 15 14 4 17 17 C 1.34670 * 120.62004 * 359.97438 * 16 15 14 18 18 N 1.37072 * 120.55404 * 0.02562 * 17 16 15 19 19 C 1.35031 * 133.11344 * 179.97438 * 18 17 16 20 20 N 1.30902 * 109.37089 * 180.02562 * 19 18 17 21 21 C 1.33400 * 109.87134 * 359.97438 * 20 19 18 22 22 C 1.37992 * 107.46092 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47409 * 311.09520 * 1 2 3 24 24 H 1.09001 * 109.47060 * 71.10393 * 1 2 3 25 25 H 1.09005 * 109.46897 * 191.09476 * 1 2 3 26 26 H 1.09000 * 109.47304 * 240.00228 * 2 1 3 27 27 H 1.09000 * 109.47123 * 184.30213 * 3 2 1 28 28 H 1.09004 * 109.46782 * 304.29554 * 3 2 1 29 29 H 1.08998 * 109.47337 * 64.29221 * 3 2 1 30 30 H 0.96999 * 120.00007 * 179.97438 * 9 8 6 31 31 H 1.08000 * 120.11453 * 0.03343 * 15 14 4 32 32 H 1.07999 * 119.68992 * 180.02562 * 16 15 14 33 33 H 1.07993 * 119.72499 * 180.28027 * 17 16 15 34 34 H 1.08007 * 125.31770 * 359.95593 * 19 18 17 35 35 H 1.07992 * 126.27006 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1300 -0.7189 1.2505 6 6 1.5406 -2.1430 1.2476 7 1 0.8729 -2.4818 2.0259 8 6 1.9361 -3.0114 0.2523 9 7 2.8468 -2.6400 -0.6208 10 14 1.1785 -4.7154 0.1441 11 1 -0.0278 -4.6667 -0.7206 12 1 2.1660 -5.6603 -0.4366 13 1 0.7949 -5.1738 1.5035 14 6 1.5348 -0.0127 2.4797 15 6 0.2113 -0.0274 2.7871 16 6 -0.2462 0.6395 3.9399 17 6 0.6160 1.2924 4.7423 18 7 1.9551 1.3197 4.4506 19 6 3.0210 1.8818 5.0598 20 7 4.1036 1.6154 4.3737 21 6 3.7936 0.8793 3.3052 22 6 2.4293 0.6737 3.3258 23 1 -0.3634 0.6755 0.7745 24 1 -0.3633 0.3328 -0.9723 25 1 -0.3633 -1.0085 0.1978 26 1 1.8934 -0.5138 -0.8900 27 1 3.1272 1.4436 -0.0771 28 1 1.6151 1.9781 -0.8490 29 1 1.7408 1.9337 0.9259 30 1 3.1254 -3.2510 -1.3207 31 1 -0.4874 -0.5489 2.1496 32 1 -1.2984 0.6267 4.1832 33 1 0.2501 1.7952 5.6251 34 1 2.9858 2.4617 5.9703 35 1 4.4839 0.5123 2.5602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259885055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:32 Heat of formation + Delta-G solvation = 61.684467 kcal Electronic energy + Delta-G solvation = -17941.568151 eV Core-core repulsion = 15325.874600 eV Total energy + Delta-G solvation = -2615.693551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -43.57950 -39.23997 -37.23208 -34.20148 -33.47841 -31.79182 -29.64282 -28.40399 -27.74011 -25.52023 -23.69152 -23.24119 -22.37928 -20.33137 -18.42711 -18.26313 -17.38904 -16.71647 -16.60944 -16.14735 -15.57972 -15.09275 -14.79564 -14.54924 -14.36386 -14.15288 -13.45658 -13.10893 -12.99556 -12.77624 -12.69562 -12.59578 -12.35934 -11.85715 -11.73030 -11.62175 -11.24747 -11.16793 -10.89975 -10.69277 -10.36425 -10.01080 -8.22239 -8.03063 -6.16009 0.15497 0.50741 1.42326 1.44588 1.52504 1.88785 2.20560 2.44734 2.73772 3.22930 3.74706 3.78506 4.02085 4.20953 4.31382 4.35814 4.49493 4.51695 4.60693 4.70287 4.91035 5.01718 5.04881 5.12627 5.16195 5.26965 5.35141 5.50187 5.61744 5.63628 5.75758 5.78718 5.84103 6.08274 6.11235 6.37042 6.50673 6.90750 6.99259 7.48903 8.99376 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.008143 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.966003 B = 3437.848921 C = 3468.348686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.094 3.906 5 H 0.001 0.999 6 C -0.511 4.511 7 H 0.055 0.945 8 C 0.021 3.979 9 N -0.914 5.914 10 Si 0.944 3.056 11 H -0.271 1.271 12 H -0.290 1.290 13 H -0.271 1.271 14 C -0.017 4.017 15 C -0.146 4.146 16 C -0.122 4.122 17 C 0.016 3.984 18 N -0.368 5.368 19 C 0.128 3.872 20 N -0.489 5.489 21 C -0.057 4.057 22 C 0.001 3.999 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.140 0.860 32 H 0.182 0.818 33 H 0.208 0.792 34 H 0.252 0.748 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 8.266 8.561 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.098 4.098 3 C -0.188 4.188 4 C 0.075 3.925 5 H 0.019 0.981 6 C -0.549 4.549 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.553 5.553 10 Si 0.770 3.230 11 H -0.197 1.197 12 H -0.216 1.216 13 H -0.195 1.195 14 C -0.019 4.019 15 C -0.166 4.166 16 C -0.142 4.142 17 C -0.102 4.102 18 N -0.039 5.039 19 C -0.146 4.146 20 N -0.203 5.203 21 C -0.210 4.210 22 C -0.109 4.109 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.158 0.842 32 H 0.200 0.800 33 H 0.225 0.775 34 H 0.268 0.732 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.321 8.566 8.776 14.283 hybrid contribution -0.435 -1.502 -0.784 1.749 sum -7.756 7.064 7.993 13.189 Atomic orbital electron populations 1.21913 0.95428 1.01342 1.00002 1.20919 0.95878 0.93529 0.99519 1.21757 0.99597 0.97144 1.00270 1.17607 0.94502 0.92556 0.87845 0.98130 1.21305 1.28272 0.95418 1.09904 0.92712 1.25597 0.95083 1.01336 0.95836 1.70061 1.30428 1.37372 1.17486 0.85771 0.78439 0.80460 0.78331 1.19683 1.21636 1.19543 1.19719 0.92825 0.93824 0.95500 1.21354 0.95248 1.01562 0.98464 1.21298 1.01799 0.97189 0.93908 1.22248 0.79292 1.04984 1.03678 1.43065 1.08358 1.34228 1.18201 1.25554 0.79242 1.06467 1.03382 1.69858 1.29168 1.15223 1.06076 1.22332 0.92384 1.06120 1.00159 1.19788 0.95326 1.03567 0.92221 0.92125 0.94061 0.92877 0.92548 0.94862 0.92585 0.94128 0.93114 0.84248 0.80048 0.77516 0.73231 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 7.53 71.98 0.54 -4.46 16 2 C -0.08 -3.56 2.58 -10.79 -0.03 -3.58 16 3 C -0.13 -5.17 9.00 71.98 0.65 -4.52 16 4 C 0.09 4.57 1.80 -12.29 -0.02 4.55 16 5 H 0.00 0.03 7.20 -2.39 -0.02 0.01 16 6 C -0.51 -26.72 6.59 25.60 0.17 -26.55 16 7 H 0.05 2.83 7.30 -2.91 -0.02 2.81 16 8 C 0.02 1.11 5.24 84.66 0.44 1.55 16 9 N -0.91 -51.90 11.89 21.45 0.25 -51.64 16 10 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 14 C -0.02 -0.69 3.48 -19.74 -0.07 -0.76 16 15 C -0.15 -5.04 6.82 22.36 0.15 -4.88 16 16 C -0.12 -3.00 9.97 22.08 0.22 -2.78 16 17 C 0.02 0.38 10.97 83.06 0.91 1.29 16 18 N -0.37 -11.60 2.94 -351.44 -1.03 -12.63 16 19 C 0.13 3.79 12.75 180.15 2.30 6.09 16 20 N -0.49 -18.56 11.19 -198.05 -2.22 -20.78 16 21 C -0.06 -2.40 11.50 84.40 0.97 -1.43 16 22 C 0.00 0.05 6.47 38.76 0.25 0.30 16 23 H 0.06 2.07 5.77 -2.39 -0.01 2.06 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 2.18 6.32 -2.38 -0.02 2.16 16 26 H 0.06 2.93 6.62 -2.39 -0.02 2.91 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 29 H 0.04 1.56 6.93 -2.39 -0.02 1.55 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.14 4.85 5.49 -2.91 -0.02 4.84 16 32 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.25 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.16 6.95 7.68 -2.91 -0.02 6.93 16 Total: -1.00 -65.99 281.81 6.60 -59.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.08 Total: 16.27 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 6.49 Total: -35.20 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -3.00 Total: -85.06 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.99 6.60 -59.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259885055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.080 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds