Wall clock time and date at job start Mon Mar 30 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47028 * 2 1 4 4 N 1.30109 * 124.94988 * 304.97650 * 3 2 1 5 5 C 1.35785 * 109.64196 * 180.02562 * 4 3 2 6 6 C 1.39746 * 133.60160 * 180.02562 * 5 4 3 7 7 C 1.36606 * 119.88512 * 180.23402 * 6 5 4 8 8 C 1.38776 * 120.66957 * 359.50085 * 7 6 5 9 9 C 1.37858 * 120.45004 * 0.46442 * 8 7 6 10 10 C 1.50697 * 120.15480 * 179.76997 * 9 8 7 11 11 H 1.08994 * 109.47644 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47071 * 300.02253 * 10 9 8 13 13 C 1.50702 * 109.47070 * 60.01882 * 10 9 8 14 14 H 1.07999 * 120.00139 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99975 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99628 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00164 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47482 * 89.99577 * 17 15 13 19 19 H 1.48501 * 109.47077 * 209.99938 * 17 15 13 20 20 H 1.48502 * 109.46843 * 329.99893 * 17 15 13 21 21 C 1.38837 * 119.68906 * 359.78687 * 9 8 7 22 22 N 1.36037 * 124.94757 * 125.02005 * 3 2 1 23 23 H 0.97001 * 126.35332 * 359.95634 * 22 3 2 24 24 H 1.08998 * 109.47263 * 59.99717 * 1 2 3 25 25 H 1.08996 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47135 * 300.00082 * 1 2 3 27 27 H 1.09003 * 109.46757 * 240.00237 * 2 1 3 28 28 H 1.08998 * 109.47263 * 120.00283 * 2 1 3 29 29 H 1.08002 * 120.05286 * 359.94723 * 6 5 4 30 30 H 1.08003 * 119.66110 * 179.71724 * 7 6 5 31 31 H 1.08000 * 119.77565 * 180.25870 * 8 7 6 32 32 H 1.09007 * 109.47236 * 299.99918 * 12 10 9 33 33 H 1.09003 * 109.47208 * 59.99571 * 12 10 9 34 34 H 1.08999 * 109.47492 * 179.97438 * 12 10 9 35 35 H 0.97005 * 119.99829 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7044 2.3273 -0.8738 5 6 2.3351 3.4934 -0.5804 6 6 2.3438 4.7596 -1.1716 7 6 3.1045 5.7577 -0.6317 8 6 3.8640 5.5315 0.5075 9 6 3.8702 4.2906 1.1080 10 6 4.7015 4.0509 2.3419 11 1 4.5783 3.0182 2.6681 12 6 6.1748 4.3126 2.0230 13 6 4.2521 4.9812 3.4389 14 1 3.4449 5.6763 3.2606 15 6 4.8714 4.9451 4.6704 16 7 5.8546 4.0991 4.8873 17 14 4.3139 6.0978 6.0304 18 1 3.2443 5.4438 6.8262 19 1 5.4648 6.4144 6.9137 20 1 3.7893 7.3518 5.4323 21 6 3.1073 3.2627 0.5705 22 7 2.8954 1.9422 0.9132 23 1 3.2884 1.4734 1.6660 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.7538 4.9475 -2.0565 30 1 3.1121 6.7336 -1.0943 31 1 4.4569 6.3321 0.9245 32 1 6.5000 3.6396 1.2295 33 1 6.2981 5.3453 1.6968 34 1 6.7761 4.1396 2.9156 35 1 6.2900 4.0734 5.7537 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:49 Heat of formation + Delta-G solvation = 45.663785 kcal Electronic energy + Delta-G solvation = -17210.010953 eV Core-core repulsion = 14593.622693 eV Total energy + Delta-G solvation = -2616.388260 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61900 -37.26309 -34.51367 -33.36157 -32.37786 -30.82435 -28.31240 -27.83799 -25.20056 -24.28726 -22.30515 -21.72173 -20.23184 -19.40873 -17.15729 -16.62090 -16.00326 -15.21206 -14.85699 -14.52698 -14.00101 -13.81998 -13.43825 -13.02122 -12.64471 -12.36475 -11.70391 -11.56890 -11.46685 -11.34386 -11.11702 -11.05280 -10.94876 -10.75938 -10.49608 -10.19571 -10.05065 -9.82478 -9.16799 -9.02463 -8.45960 -7.72134 -7.25464 -6.09239 -4.16353 1.62202 2.18982 3.24875 3.28555 3.32158 3.36879 3.40414 4.34934 4.42236 4.57086 4.94475 5.17232 5.21604 5.24504 5.44580 5.67465 5.74273 5.78468 5.91025 6.07212 6.09155 6.13928 6.21801 6.42157 6.70929 6.75165 6.88535 7.12788 7.14434 7.20503 7.26457 7.56743 7.63768 7.79287 7.88314 8.00448 8.29440 8.37165 8.86513 9.48938 10.96053 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.006943 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.646538 B = 4032.061922 C = 4582.870770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.267 3.733 4 N -0.499 5.499 5 C 0.042 3.958 6 C -0.101 4.101 7 C -0.121 4.121 8 C -0.112 4.112 9 C -0.021 4.021 10 C 0.076 3.924 11 H 0.023 0.977 12 C -0.131 4.131 13 C -0.507 4.507 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.048 3.952 22 N -0.590 5.590 23 H 0.422 0.578 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.007 0.993 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 -5.159 -7.885 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C 0.000 4.000 4 N -0.221 5.221 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.141 4.141 8 C -0.131 4.131 9 C -0.023 4.023 10 C 0.057 3.943 11 H 0.041 0.959 12 C -0.189 4.189 13 C -0.545 4.545 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.061 4.061 22 N -0.202 5.202 23 H 0.261 0.739 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.929 -5.273 -8.466 11.603 hybrid contribution 0.510 0.510 1.937 2.067 sum -5.419 -4.762 -6.529 9.730 Atomic orbital electron populations 1.21671 0.93360 1.01780 1.03231 1.20041 0.97214 0.87168 1.03589 1.23407 0.92048 0.96911 0.87634 1.70238 1.26302 0.99305 1.26246 1.18992 0.99017 0.93790 0.95817 1.19711 1.01679 0.90101 1.00624 1.20608 0.98058 0.98363 0.97051 1.20776 1.00407 0.96464 0.95500 1.19687 0.95401 0.90334 0.96922 1.17784 0.91021 0.97241 0.88246 0.95888 1.21792 0.98925 0.97974 1.00221 1.21135 1.17850 1.19890 0.95625 0.92245 1.24972 0.94867 0.95664 0.98454 1.69880 1.23299 1.36491 1.23297 0.86558 0.78189 0.81333 0.81783 1.20744 1.21150 1.19712 1.18880 1.03064 0.85462 0.98669 1.43014 1.40241 1.10010 1.26892 0.73908 0.91272 0.91994 0.92570 0.89084 0.90204 0.86583 0.86349 0.85358 0.97417 0.94867 0.89591 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.85 37.16 0.37 -1.11 16 2 C -0.04 -0.46 6.56 -27.88 -0.18 -0.64 16 3 C 0.27 4.36 7.37 -154.83 -1.14 3.22 16 4 N -0.50 -9.42 11.21 -8.23 -0.09 -9.51 16 5 C 0.04 0.84 7.23 -84.70 -0.61 0.23 16 6 C -0.10 -1.84 10.05 -39.61 -0.40 -2.24 16 7 C -0.12 -2.12 9.96 -39.97 -0.40 -2.52 16 8 C -0.11 -2.25 8.71 -39.52 -0.34 -2.59 16 9 C -0.02 -0.46 4.74 -104.54 -0.50 -0.96 16 10 C 0.08 1.85 2.49 -92.92 -0.23 1.62 16 11 H 0.02 0.59 7.37 -51.93 -0.38 0.21 16 12 C -0.13 -3.11 8.78 37.16 0.33 -2.79 16 13 C -0.51 -13.54 8.24 -34.44 -0.28 -13.82 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.05 1.01 6.95 -83.99 -0.58 0.43 16 22 N -0.59 -10.57 6.13 -8.00 -0.05 -10.61 16 23 H 0.42 6.77 8.45 -40.82 -0.35 6.43 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.13 2.54 7.57 -52.49 -0.40 2.15 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.75 7.39 -51.93 -0.38 0.36 16 34 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -30.17 293.49 -8.93 -39.09 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.74 Total: 4.31 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -4.07 Total: -19.61 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.49 Total: -44.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.17 -8.93 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.756 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds