Wall clock time and date at job start Mon Mar 30 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47028 * 2 1 4 4 N 1.30109 * 124.94988 * 304.97650 * 3 2 1 5 5 C 1.35785 * 109.64196 * 180.02562 * 4 3 2 6 6 C 1.39746 * 133.60160 * 180.02562 * 5 4 3 7 7 C 1.36606 * 119.88512 * 180.23402 * 6 5 4 8 8 C 1.38776 * 120.66957 * 359.50085 * 7 6 5 9 9 C 1.37858 * 120.45004 * 0.46442 * 8 7 6 10 10 C 1.50697 * 120.15480 * 179.76997 * 9 8 7 11 11 H 1.08994 * 109.47644 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47071 * 300.02253 * 10 9 8 13 13 C 1.50702 * 109.47070 * 60.01882 * 10 9 8 14 14 H 1.07999 * 120.00139 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99975 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99628 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00164 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47482 * 89.99577 * 17 15 13 19 19 H 1.48501 * 109.47077 * 209.99938 * 17 15 13 20 20 H 1.48502 * 109.46843 * 329.99893 * 17 15 13 21 21 C 1.38837 * 119.68906 * 359.78687 * 9 8 7 22 22 N 1.36037 * 124.94757 * 125.02005 * 3 2 1 23 23 H 0.97001 * 126.35332 * 359.95634 * 22 3 2 24 24 H 1.08998 * 109.47263 * 59.99717 * 1 2 3 25 25 H 1.08996 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47135 * 300.00082 * 1 2 3 27 27 H 1.09003 * 109.46757 * 240.00237 * 2 1 3 28 28 H 1.08998 * 109.47263 * 120.00283 * 2 1 3 29 29 H 1.08002 * 120.05286 * 359.94723 * 6 5 4 30 30 H 1.08003 * 119.66110 * 179.71724 * 7 6 5 31 31 H 1.08000 * 119.77565 * 180.25870 * 8 7 6 32 32 H 1.09007 * 109.47236 * 299.99918 * 12 10 9 33 33 H 1.09003 * 109.47208 * 59.99571 * 12 10 9 34 34 H 1.08999 * 109.47492 * 179.97438 * 12 10 9 35 35 H 0.97005 * 119.99829 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7044 2.3273 -0.8738 5 6 2.3351 3.4934 -0.5804 6 6 2.3438 4.7596 -1.1716 7 6 3.1045 5.7577 -0.6317 8 6 3.8640 5.5315 0.5075 9 6 3.8702 4.2906 1.1080 10 6 4.7015 4.0509 2.3419 11 1 4.5783 3.0182 2.6681 12 6 6.1748 4.3126 2.0230 13 6 4.2521 4.9812 3.4389 14 1 3.4449 5.6763 3.2606 15 6 4.8714 4.9451 4.6704 16 7 5.8546 4.0991 4.8873 17 14 4.3139 6.0978 6.0304 18 1 3.2443 5.4438 6.8262 19 1 5.4648 6.4144 6.9137 20 1 3.7893 7.3518 5.4323 21 6 3.1073 3.2627 0.5705 22 7 2.8954 1.9422 0.9132 23 1 3.2884 1.4734 1.6660 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.7538 4.9475 -2.0565 30 1 3.1121 6.7336 -1.0943 31 1 4.4569 6.3321 0.9245 32 1 6.5000 3.6396 1.2295 33 1 6.2981 5.3453 1.6968 34 1 6.7761 4.1396 2.9156 35 1 6.2900 4.0734 5.7537 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:49 Heat of formation + Delta-G solvation = 29.042427 kcal Electronic energy + Delta-G solvation = -17210.731709 eV Core-core repulsion = 14593.622693 eV Total energy + Delta-G solvation = -2617.109016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.02752 -38.77527 -36.27626 -34.39621 -34.01927 -32.53760 -29.73969 -29.41473 -27.24507 -25.38922 -23.95468 -23.18832 -21.51253 -21.05121 -18.64130 -18.32100 -17.70801 -16.66059 -16.44241 -16.03635 -15.43109 -14.92828 -14.82197 -14.64072 -14.36021 -13.61139 -13.40118 -13.01130 -12.93417 -12.82851 -12.72538 -12.47884 -12.37740 -12.19797 -12.17173 -11.97399 -11.70348 -11.43278 -10.97548 -10.73869 -10.50961 -9.17496 -8.78822 -8.13161 -6.27531 0.17593 0.70677 1.38824 1.40972 1.50839 1.89251 2.07341 2.40636 3.04476 3.14801 3.23127 3.74354 4.18823 4.22971 4.28042 4.35523 4.51073 4.55766 4.63996 4.75815 4.85846 4.97484 4.98939 5.02645 5.12466 5.18055 5.31180 5.38693 5.49571 5.60213 5.68260 5.70678 5.97883 6.01632 6.12700 6.30737 6.51477 6.79774 6.96099 7.40574 8.90321 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.006943 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.646538 B = 4032.061922 C = 4582.870770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.041 4.041 3 C 0.279 3.721 4 N -0.522 5.522 5 C 0.024 3.976 6 C -0.102 4.102 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.048 4.048 10 C 0.079 3.921 11 H 0.001 0.999 12 C -0.121 4.121 13 C -0.520 4.520 14 H 0.050 0.950 15 C 0.018 3.982 16 N -0.915 5.915 17 Si 0.952 3.048 18 H -0.279 1.279 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.021 3.979 22 N -0.594 5.594 23 H 0.427 0.573 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.019 0.981 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -5.363 -8.656 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C 0.012 3.988 4 N -0.244 5.244 5 C -0.093 4.093 6 C -0.121 4.121 7 C -0.132 4.132 8 C -0.141 4.141 9 C -0.050 4.050 10 C 0.061 3.939 11 H 0.019 0.981 12 C -0.178 4.178 13 C -0.558 4.558 14 H 0.068 0.932 15 C -0.181 4.181 16 N -0.554 5.554 17 Si 0.778 3.222 18 H -0.205 1.205 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.088 4.088 22 N -0.206 5.206 23 H 0.267 0.733 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.143 0.857 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.999 -5.479 -9.241 12.822 hybrid contribution 0.804 0.502 2.121 2.323 sum -6.195 -4.977 -7.120 10.670 Atomic orbital electron populations 1.21651 0.92538 1.03463 1.01930 1.20364 0.97731 0.84158 1.05766 1.24450 0.90045 0.98384 0.85885 1.70285 1.27251 0.99414 1.27441 1.19456 0.99056 0.95024 0.95795 1.20112 1.01472 0.89422 1.01132 1.20916 0.96541 0.99922 0.95790 1.20906 1.00970 0.95692 0.96496 1.19539 0.96732 0.91882 0.96870 1.17618 0.91751 0.95415 0.89135 0.98064 1.21634 0.98394 0.98441 0.99370 1.21360 1.17626 1.20140 0.96723 0.93181 1.25669 0.94963 0.97027 1.00458 1.69991 1.24056 1.37609 1.23769 0.85641 0.77822 0.79588 0.79168 1.20500 1.20609 1.19298 1.19025 1.03754 0.86486 0.99543 1.43135 1.40641 1.09351 1.27439 0.73348 0.92602 0.88821 0.93818 0.87011 0.87817 0.83987 0.82513 0.85692 0.96235 0.94475 0.91975 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.85 71.98 0.71 -1.82 16 2 C -0.04 -0.82 6.56 29.85 0.20 -0.63 16 3 C 0.28 8.81 7.37 137.92 1.02 9.82 16 4 N -0.52 -19.17 11.21 -179.96 -2.02 -21.18 16 5 C 0.02 0.97 7.23 39.45 0.29 1.25 16 6 C -0.10 -3.52 10.05 22.25 0.22 -3.30 16 7 C -0.11 -3.71 9.96 22.02 0.22 -3.49 16 8 C -0.12 -4.84 8.71 22.31 0.19 -4.64 16 9 C -0.05 -2.13 4.74 -19.81 -0.09 -2.22 16 10 C 0.08 3.98 2.49 -12.29 -0.03 3.95 16 11 H 0.00 0.07 7.37 -2.39 -0.02 0.05 16 12 C -0.12 -5.84 8.78 71.98 0.63 -5.21 16 13 C -0.52 -28.31 8.24 25.60 0.21 -28.09 16 14 H 0.05 2.75 7.60 -2.91 -0.02 2.73 16 15 C 0.02 0.96 5.30 84.66 0.45 1.41 16 16 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 17 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C 0.02 0.89 6.95 38.86 0.27 1.16 16 22 N -0.59 -21.23 6.13 -179.23 -1.10 -22.32 16 23 H 0.43 13.87 8.45 -92.71 -0.78 13.09 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.13 4.96 7.57 -2.91 -0.02 4.94 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.04 1.70 7.39 -2.39 -0.02 1.68 16 34 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 35 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -65.28 293.49 3.74 -61.54 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.31 Total: 19.78 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 4.28 Total: -31.81 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -2.87 Total: -94.59 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.28 3.74 -61.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.584 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds