Wall clock time and date at job start Mon Mar 30 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46916 * 2 1 4 4 N 1.30104 * 124.95104 * 304.97317 * 3 2 1 5 5 C 1.35790 * 109.64622 * 179.73795 * 4 3 2 6 6 C 1.39735 * 133.59669 * 179.52792 * 5 4 3 7 7 C 1.36603 * 119.88474 * 180.47634 * 6 5 4 8 8 C 1.38782 * 120.66847 * 0.26358 * 7 6 5 9 9 C 1.37856 * 120.44798 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.14975 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47091 * 264.99757 * 10 9 8 12 12 C 1.50702 * 109.47091 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99991 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00016 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99766 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99964 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47394 * 60.00493 * 16 14 12 18 18 H 1.48499 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47430 * 300.00474 * 16 14 12 20 20 C 1.38825 * 119.69218 * 0.02562 * 9 8 7 21 21 N 1.36041 * 124.95066 * 125.00081 * 3 2 1 22 22 H 0.97006 * 126.34612 * 359.94151 * 21 3 2 23 23 H 1.09007 * 109.46918 * 299.99995 * 1 2 3 24 24 H 1.08999 * 109.46634 * 59.99990 * 1 2 3 25 25 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47267 * 240.00143 * 2 1 3 27 27 H 1.09004 * 109.47015 * 119.99410 * 2 1 3 28 28 H 1.08002 * 120.06112 * 0.76237 * 6 5 4 29 29 H 1.08002 * 119.67092 * 180.27749 * 7 6 5 30 30 H 1.07995 * 119.77284 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.47582 * 24.99958 * 10 9 8 32 32 H 1.09004 * 109.46891 * 144.99940 * 10 9 8 33 33 H 1.08999 * 109.47317 * 300.00057 * 11 10 9 34 34 H 1.08999 * 109.46677 * 60.00450 * 11 10 9 35 35 H 0.97005 * 120.00097 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.7045 2.3273 -0.8738 5 6 2.3302 3.4953 -0.5768 6 6 2.3434 4.7597 -1.1714 7 6 3.1004 5.7591 -0.6290 8 6 3.8640 5.5315 0.5073 9 6 3.8701 4.2907 1.1079 10 6 4.7014 4.0511 2.3419 11 6 6.0528 3.4574 1.9391 12 6 6.8843 3.2185 3.1731 13 1 6.4883 3.4650 4.1471 14 6 8.1502 2.6841 3.0586 15 7 8.6321 2.3835 1.8725 16 14 9.1805 2.3873 4.5881 17 1 8.4717 1.4409 5.4865 18 1 10.4922 1.8111 4.1972 19 1 9.3971 3.6743 5.2966 20 6 3.1070 3.2629 0.5707 21 7 2.8951 1.9425 0.9134 22 1 3.2877 1.4737 1.6665 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.7526 4.9479 -2.0557 29 1 3.1046 6.7363 -1.0888 30 1 4.4568 6.3321 0.9242 31 1 4.8601 4.9957 2.8622 32 1 4.1812 3.3562 3.0011 33 1 5.8941 2.5128 1.4190 34 1 6.5729 4.1524 1.2800 35 1 9.5228 2.0079 1.7918 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259931622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:40 Heat of formation + Delta-G solvation = 38.534834 kcal Electronic energy + Delta-G solvation = -16825.745967 eV Core-core repulsion = 14209.048573 eV Total energy + Delta-G solvation = -2616.697394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.83420 -37.40990 -34.35796 -33.47975 -32.72195 -31.24275 -28.65139 -28.45181 -25.15097 -24.22040 -22.04047 -21.73769 -20.36693 -19.89827 -17.32747 -16.79895 -16.23937 -15.38260 -14.99618 -14.54623 -14.24947 -14.04313 -13.65415 -13.10010 -12.74889 -12.56275 -12.33398 -11.70047 -11.65408 -11.55342 -11.31755 -11.21907 -10.97165 -10.93386 -10.68823 -10.26186 -9.96027 -9.75259 -9.48025 -9.15081 -8.42791 -7.95114 -7.55250 -6.06673 -4.11147 1.34369 1.92536 3.07337 3.21323 3.27535 3.32841 3.34686 4.24502 4.28098 4.39864 4.81341 5.03867 5.14428 5.26570 5.28432 5.38325 5.52616 5.67917 5.73248 5.75016 5.79873 5.91483 6.07719 6.16618 6.22897 6.44688 6.56152 6.83398 6.86690 6.92467 7.02579 7.28870 7.58173 7.64661 7.71283 7.91878 8.17188 8.31589 8.95772 9.53564 11.03957 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.005979 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.193222 B = 4681.867512 C = 5593.711974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.276 3.724 4 N -0.497 5.497 5 C 0.046 3.954 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.116 4.116 9 C -0.046 4.046 10 C -0.079 4.079 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.055 3.945 21 N -0.589 5.589 22 H 0.424 0.576 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.012 0.988 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.744 -0.974 -3.081 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C 0.009 3.991 4 N -0.219 5.219 5 C -0.073 4.073 6 C -0.109 4.109 7 C -0.140 4.140 8 C -0.136 4.136 9 C -0.049 4.049 10 C -0.117 4.117 11 C -0.005 4.005 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.055 4.055 21 N -0.200 5.200 22 H 0.264 0.736 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.038 0.962 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.136 -1.118 -3.899 14.707 hybrid contribution 1.563 -0.317 1.821 2.421 sum -12.573 -1.435 -2.077 12.824 Atomic orbital electron populations 1.21674 0.93259 1.01940 1.03111 1.20093 0.97195 0.86987 1.04012 1.23486 0.91535 0.96967 0.87150 1.70280 1.26691 0.99110 1.25799 1.19024 0.98850 0.93910 0.95468 1.19810 1.00987 0.89940 1.00135 1.20574 0.97925 0.98711 0.96823 1.20794 1.00198 0.96092 0.96530 1.19335 0.95903 0.91042 0.98625 1.20807 0.97213 1.01324 0.92318 1.19053 0.88945 0.95731 0.96785 1.21198 0.99951 1.42239 0.93074 0.92642 1.25025 0.97822 0.95519 0.95920 1.69963 1.17432 1.43299 1.22443 0.86648 0.79491 0.78585 0.83221 1.20272 1.21226 1.20133 1.18718 1.02389 0.85412 0.99013 1.43056 1.39986 1.09804 1.27143 0.73632 0.92687 0.91231 0.91848 0.88760 0.89990 0.86104 0.85885 0.85475 0.91614 0.93035 0.96983 0.96156 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.85 37.16 0.37 -0.95 16 2 C -0.04 -0.46 6.56 -27.88 -0.18 -0.64 16 3 C 0.28 4.22 7.37 -154.82 -1.14 3.07 16 4 N -0.50 -8.76 11.21 -8.23 -0.09 -8.86 16 5 C 0.05 0.84 7.23 -84.70 -0.61 0.23 16 6 C -0.09 -1.45 10.05 -39.61 -0.40 -1.84 16 7 C -0.12 -1.82 9.96 -39.97 -0.40 -2.22 16 8 C -0.12 -1.98 9.67 -39.52 -0.38 -2.36 16 9 C -0.05 -0.89 5.14 -104.54 -0.54 -1.42 16 10 C -0.08 -1.63 5.29 -27.88 -0.15 -1.78 16 11 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 12 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.05 1.03 7.00 -83.99 -0.59 0.44 16 21 N -0.59 -9.71 6.23 -8.00 -0.05 -9.76 16 22 H 0.42 6.27 8.96 -40.82 -0.37 5.90 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 32 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -32.35 301.59 -9.43 -41.78 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.98 Total: 2.08 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -4.57 Total: -20.13 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.59 Total: -44.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.35 -9.43 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.311 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds