Wall clock time and date at job start Mon Mar 30 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46916 * 2 1 4 4 N 1.30104 * 124.95104 * 304.97317 * 3 2 1 5 5 C 1.35790 * 109.64622 * 179.73795 * 4 3 2 6 6 C 1.39735 * 133.59669 * 179.52792 * 5 4 3 7 7 C 1.36603 * 119.88474 * 180.47634 * 6 5 4 8 8 C 1.38782 * 120.66847 * 0.26358 * 7 6 5 9 9 C 1.37856 * 120.44798 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.14975 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47091 * 264.99757 * 10 9 8 12 12 C 1.50702 * 109.47091 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99991 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00016 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99766 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99964 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47394 * 60.00493 * 16 14 12 18 18 H 1.48499 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47430 * 300.00474 * 16 14 12 20 20 C 1.38825 * 119.69218 * 0.02562 * 9 8 7 21 21 N 1.36041 * 124.95066 * 125.00081 * 3 2 1 22 22 H 0.97006 * 126.34612 * 359.94151 * 21 3 2 23 23 H 1.09007 * 109.46918 * 299.99995 * 1 2 3 24 24 H 1.08999 * 109.46634 * 59.99990 * 1 2 3 25 25 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47267 * 240.00143 * 2 1 3 27 27 H 1.09004 * 109.47015 * 119.99410 * 2 1 3 28 28 H 1.08002 * 120.06112 * 0.76237 * 6 5 4 29 29 H 1.08002 * 119.67092 * 180.27749 * 7 6 5 30 30 H 1.07995 * 119.77284 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.47582 * 24.99958 * 10 9 8 32 32 H 1.09004 * 109.46891 * 144.99940 * 10 9 8 33 33 H 1.08999 * 109.47317 * 300.00057 * 11 10 9 34 34 H 1.08999 * 109.46677 * 60.00450 * 11 10 9 35 35 H 0.97005 * 120.00097 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.7045 2.3273 -0.8738 5 6 2.3302 3.4953 -0.5768 6 6 2.3434 4.7597 -1.1714 7 6 3.1004 5.7591 -0.6290 8 6 3.8640 5.5315 0.5073 9 6 3.8701 4.2907 1.1079 10 6 4.7014 4.0511 2.3419 11 6 6.0528 3.4574 1.9391 12 6 6.8843 3.2185 3.1731 13 1 6.4883 3.4650 4.1471 14 6 8.1502 2.6841 3.0586 15 7 8.6321 2.3835 1.8725 16 14 9.1805 2.3873 4.5881 17 1 8.4717 1.4409 5.4865 18 1 10.4922 1.8111 4.1972 19 1 9.3971 3.6743 5.2966 20 6 3.1070 3.2629 0.5707 21 7 2.8951 1.9425 0.9134 22 1 3.2877 1.4737 1.6665 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.7526 4.9479 -2.0557 29 1 3.1046 6.7363 -1.0888 30 1 4.4568 6.3321 0.9242 31 1 4.8601 4.9957 2.8622 32 1 4.1812 3.3562 3.0011 33 1 5.8941 2.5128 1.4190 34 1 6.5729 4.1524 1.2800 35 1 9.5228 2.0079 1.7918 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259931622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:39 Heat of formation + Delta-G solvation = 19.874777 kcal Electronic energy + Delta-G solvation = -16826.555128 eV Core-core repulsion = 14209.048573 eV Total energy + Delta-G solvation = -2617.506555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.10639 -38.72286 -36.09463 -34.53833 -34.33878 -32.81643 -30.31304 -29.65867 -26.96056 -25.26692 -23.59725 -23.25464 -21.60036 -21.33590 -18.72439 -18.48242 -17.84388 -16.63545 -16.47290 -16.25240 -15.57559 -14.98618 -14.84915 -14.65969 -14.44740 -14.19709 -13.58479 -13.24807 -12.96717 -12.81597 -12.73334 -12.50807 -12.39282 -12.35654 -12.04873 -11.88507 -11.74803 -11.36819 -11.28654 -10.86346 -10.59491 -9.25045 -8.91733 -8.22542 -6.35985 0.04417 0.61601 1.39005 1.41661 1.49859 1.80250 2.00626 2.38483 2.93048 3.10123 3.17797 3.64684 4.04849 4.08953 4.18350 4.32909 4.35054 4.40261 4.52842 4.68136 4.75805 4.79084 4.89861 4.98459 5.01763 5.09857 5.23807 5.36246 5.44028 5.49470 5.58319 5.59544 5.76061 5.78965 6.01696 6.17513 6.43702 6.80606 6.89860 7.34288 8.88327 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.005979 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.193222 B = 4681.867512 C = 5593.711974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.281 3.719 4 N -0.522 5.522 5 C 0.022 3.978 6 C -0.093 4.093 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.075 4.075 10 C -0.062 4.062 11 C 0.042 3.958 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.030 3.970 21 N -0.594 5.594 22 H 0.429 0.571 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.143 0.857 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.056 0.944 33 H -0.016 1.016 34 H -0.011 1.011 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.423 -1.046 -2.399 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C 0.014 3.986 4 N -0.243 5.243 5 C -0.096 4.096 6 C -0.113 4.113 7 C -0.132 4.132 8 C -0.139 4.139 9 C -0.078 4.078 10 C -0.099 4.099 11 C 0.005 3.995 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.080 4.080 21 N -0.205 5.205 22 H 0.269 0.731 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.161 0.839 29 H 0.180 0.820 30 H 0.159 0.841 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.002 0.998 34 H 0.007 0.993 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.834 -1.183 -3.206 15.222 hybrid contribution 1.729 -0.300 1.536 2.332 sum -13.105 -1.482 -1.670 13.294 Atomic orbital electron populations 1.21640 0.92089 1.03489 1.02128 1.20382 0.98056 0.84261 1.05656 1.24425 0.90031 0.98319 0.85776 1.70302 1.27712 0.99403 1.26932 1.19510 0.99208 0.95083 0.95782 1.20221 1.01036 0.89364 1.00656 1.20949 0.96386 1.00122 0.95791 1.21119 1.00170 0.95695 0.96930 1.19311 0.97182 0.92426 0.98869 1.20511 0.94766 1.01236 0.93424 1.18853 0.91385 0.93818 0.95410 1.21642 1.00575 1.42032 0.93995 0.91758 1.25986 0.99264 0.95079 0.99259 1.70112 1.17932 1.44286 1.24994 0.85488 0.77488 0.78949 0.79060 1.18973 1.21027 1.19073 1.18944 1.03055 0.86296 0.99742 1.43170 1.40332 1.09363 1.27630 0.73140 0.93233 0.92627 0.89000 0.87596 0.87752 0.83892 0.82011 0.84131 0.90905 0.92534 0.99797 0.99301 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.85 71.98 0.71 -1.57 16 2 C -0.04 -0.87 6.56 29.85 0.20 -0.68 16 3 C 0.28 8.52 7.37 137.92 1.02 9.54 16 4 N -0.52 -18.32 11.21 -179.96 -2.02 -20.34 16 5 C 0.02 0.81 7.23 39.45 0.29 1.10 16 6 C -0.09 -2.92 10.05 22.25 0.22 -2.70 16 7 C -0.11 -3.21 9.96 22.02 0.22 -2.99 16 8 C -0.12 -3.98 9.67 22.31 0.22 -3.77 16 9 C -0.08 -2.90 5.14 -19.81 -0.10 -3.00 16 10 C -0.06 -2.59 5.29 29.85 0.16 -2.43 16 11 C 0.04 2.25 4.96 29.85 0.15 2.40 16 12 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 0.12 5.46 84.66 0.46 0.59 16 15 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 16 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.03 1.13 7.00 38.86 0.27 1.40 16 21 N -0.59 -19.81 6.23 -179.23 -1.12 -20.93 16 22 H 0.43 12.92 8.96 -92.70 -0.83 12.09 16 23 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.07 2.88 8.05 -2.39 -0.02 2.86 16 32 H 0.06 2.25 8.12 -2.38 -0.02 2.23 16 33 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -70.74 301.59 3.46 -67.27 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.25 Total: 17.39 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 4.04 Total: -32.36 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -2.85 Total: -97.82 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.74 3.46 -67.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.146 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds