Wall clock time and date at job start Mon Mar 30 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28258 * 122.72733 * 2 1 4 4 C 1.46969 * 110.20521 * 179.97438 * 3 2 1 5 5 C 1.54217 * 103.85943 * 359.75091 * 4 3 2 6 6 N 1.36446 * 122.72398 * 179.97438 * 2 1 3 7 7 C 1.39846 * 125.84147 * 0.02562 * 6 2 1 8 8 C 1.38915 * 120.07152 * 90.02218 * 7 6 2 9 9 C 1.38089 * 119.92857 * 179.97438 * 8 7 6 10 10 C 1.38309 * 120.06806 * 359.97438 * 9 8 7 11 11 C 1.38264 * 120.14874 * 0.02562 * 10 9 8 12 12 C 1.38131 * 120.06989 * 0.28362 * 11 10 9 13 13 C 1.50698 * 120.03212 * 179.72425 * 12 11 10 14 14 C 1.50706 * 109.46822 * 264.99122 * 13 12 11 15 15 H 1.07996 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99616 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00680 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99766 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46676 * 120.00380 * 18 16 14 21 21 H 1.48495 * 109.46844 * 240.00749 * 18 16 14 22 22 H 1.08997 * 109.47239 * 270.00407 * 1 2 3 23 23 H 1.09003 * 109.46977 * 30.00311 * 1 2 3 24 24 H 1.09001 * 109.47154 * 150.00365 * 1 2 3 25 25 H 1.08991 * 110.54753 * 118.59212 * 4 3 2 26 26 H 1.09003 * 110.54703 * 241.26373 * 4 3 2 27 27 H 1.09000 * 110.80269 * 241.92865 * 5 4 3 28 28 H 1.08996 * 110.59039 * 118.71936 * 5 4 3 29 29 H 1.07997 * 120.03871 * 359.95265 * 8 7 6 30 30 H 1.07994 * 119.96579 * 179.97438 * 9 8 7 31 31 H 1.08000 * 119.92421 * 180.02562 * 10 9 8 32 32 H 1.08002 * 119.96124 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47406 * 24.99091 * 13 12 11 34 34 H 1.09000 * 109.46981 * 144.99436 * 13 12 11 35 35 H 0.96997 * 120.00457 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2004 1.0790 0.0000 4 6 3.6352 0.7603 0.0006 5 6 3.6711 -0.7814 0.0075 6 7 2.2446 -1.1479 0.0005 7 6 1.7336 -2.4496 0.0006 8 6 1.4801 -3.0980 -1.2015 9 6 0.9760 -4.3836 -1.1980 10 6 0.7239 -5.0258 0.0007 11 6 0.9751 -4.3833 1.1990 12 6 1.4734 -3.0950 1.2024 13 6 1.7410 -2.3933 2.5089 14 6 0.5490 -1.5486 2.8787 15 1 -0.3159 -1.5228 2.2325 16 6 0.5623 -0.8095 4.0425 17 7 1.6154 -0.8412 4.8297 18 14 -0.9155 0.2371 4.5013 19 1 -1.9624 0.1001 3.4570 20 1 -1.4572 -0.2170 5.8073 21 1 -0.5018 1.6595 4.6044 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 4.1148 1.1540 -0.8954 26 1 4.1147 1.1566 0.8957 27 1 4.1600 -1.1532 0.9080 28 1 4.1697 -1.1572 -0.8859 29 1 1.6767 -2.5971 -2.1379 30 1 0.7783 -4.8880 -2.1322 31 1 0.3300 -6.0314 0.0007 32 1 0.7768 -4.8875 2.1332 33 1 1.9180 -3.1334 3.2893 34 1 2.6197 -1.7565 2.4059 35 1 1.6249 -0.3209 5.6483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259943933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:16 Heat of formation + Delta-G solvation = 56.194879 kcal Electronic energy + Delta-G solvation = -17863.181175 eV Core-core repulsion = 15247.249578 eV Total energy + Delta-G solvation = -2615.931597 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08071 -38.13448 -33.57167 -32.69893 -31.25141 -31.17622 -28.73500 -27.13679 -26.31365 -23.43733 -22.56075 -21.44176 -20.49360 -18.58117 -16.76580 -16.31262 -15.75437 -15.32838 -14.46571 -14.35916 -14.17302 -13.69561 -12.79888 -12.67787 -12.55502 -12.45754 -11.78357 -11.74428 -11.71343 -11.60286 -11.45893 -11.12348 -10.96802 -10.67700 -10.46394 -9.99400 -9.61859 -9.43525 -9.36371 -8.43755 -8.32184 -7.91191 -7.31652 -6.06508 -4.09338 1.74056 1.95922 3.19502 3.29070 3.37480 3.38328 3.67219 4.21877 4.44878 4.99137 5.16702 5.29024 5.34638 5.43331 5.46920 5.60053 5.79614 5.94466 5.95907 5.99848 6.09570 6.19417 6.27339 6.37311 6.48479 6.58626 6.73286 6.82170 6.97535 7.05994 7.06391 7.39257 7.52650 7.72926 7.87801 8.26536 8.36806 8.65803 8.93066 9.53726 11.03837 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.010972 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.889541 B = 2551.315943 C = 3365.680449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.408 3.592 3 N -0.595 5.595 4 C 0.031 3.969 5 C 0.085 3.915 6 N -0.585 5.585 7 C 0.142 3.858 8 C -0.118 4.118 9 C -0.144 4.144 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.031 4.031 13 C 0.053 3.947 14 C -0.504 4.504 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.887 3.113 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.282 1.282 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.025 0.975 34 H 0.029 0.971 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -4.322 -10.524 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 N -0.323 5.323 4 C -0.099 4.099 5 C -0.039 4.039 6 N -0.303 5.303 7 C 0.051 3.949 8 C -0.138 4.138 9 C -0.162 4.162 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.032 4.032 13 C 0.016 3.984 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.714 3.286 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.208 1.208 22 H 0.122 0.878 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.474 -3.347 -10.363 10.900 hybrid contribution -0.290 -0.301 0.502 0.653 sum 0.184 -3.648 -9.860 10.515 Atomic orbital electron populations 1.20704 0.87328 1.02396 1.05375 1.22868 0.95058 0.82108 0.86659 1.74113 1.02000 1.23857 1.32369 1.22929 0.93412 0.91830 1.01711 1.22591 0.82798 0.97154 1.01324 1.44992 1.04766 1.02731 1.77811 1.17101 1.01279 0.84364 0.92164 1.21270 1.00265 0.95174 0.97047 1.20771 1.02844 0.94949 0.97668 1.21118 1.00176 0.99516 0.92691 1.21053 1.00339 0.94780 0.97803 1.21104 0.91976 0.93019 0.97142 1.18291 0.97964 0.95003 0.87168 1.20951 1.00763 1.26456 1.06055 0.92290 1.24945 0.95964 0.96671 0.96325 1.69945 1.28681 1.41321 1.13048 0.86608 0.82922 0.80496 0.78539 1.19440 1.21024 1.20789 0.87829 0.90470 0.91237 0.90836 0.90341 0.91026 0.91904 0.86857 0.86716 0.86728 0.86028 0.95656 0.95262 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.77 36.01 0.35 -1.49 16 2 C 0.41 8.29 7.65 -155.94 -1.19 7.10 16 3 N -0.59 -12.40 11.58 -57.37 -0.66 -13.07 16 4 C 0.03 0.55 8.05 -3.15 -0.03 0.53 16 5 C 0.08 1.48 7.48 -2.98 -0.02 1.46 16 6 N -0.58 -11.40 2.13 -110.15 -0.23 -11.63 16 7 C 0.14 2.70 4.85 -83.72 -0.41 2.29 16 8 C -0.12 -1.89 9.97 -39.39 -0.39 -2.28 16 9 C -0.14 -2.07 10.04 -39.61 -0.40 -2.46 16 10 C -0.12 -1.76 10.04 -39.55 -0.40 -2.15 16 11 C -0.12 -2.19 9.68 -39.61 -0.38 -2.57 16 12 C -0.03 -0.64 5.09 -104.43 -0.53 -1.17 16 13 C 0.05 1.31 4.80 -29.03 -0.14 1.17 16 14 C -0.50 -13.37 8.29 -34.44 -0.29 -13.66 16 15 H 0.06 1.54 6.27 -52.49 -0.33 1.21 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.10 2.15 6.05 -51.93 -0.31 1.84 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.07 1.18 7.58 -51.93 -0.39 0.79 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.07 1.32 7.59 -51.93 -0.39 0.92 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.03 0.79 6.85 -51.93 -0.36 0.44 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 294.54 15.07 4.44 4.44 Total: -1.00 -30.00 294.54 -9.39 -39.39 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.72 Total: 1.48 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.92 Total: -11.60 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.16 Total: -50.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.00 -9.39 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.585 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds