Wall clock time and date at job start Mon Mar 30 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28258 * 122.72733 * 2 1 4 4 C 1.46969 * 110.20521 * 179.97438 * 3 2 1 5 5 C 1.54217 * 103.85943 * 359.75091 * 4 3 2 6 6 N 1.36446 * 122.72398 * 179.97438 * 2 1 3 7 7 C 1.39846 * 125.84147 * 0.02562 * 6 2 1 8 8 C 1.38915 * 120.07152 * 90.02218 * 7 6 2 9 9 C 1.38089 * 119.92857 * 179.97438 * 8 7 6 10 10 C 1.38309 * 120.06806 * 359.97438 * 9 8 7 11 11 C 1.38264 * 120.14874 * 0.02562 * 10 9 8 12 12 C 1.38131 * 120.06989 * 0.28362 * 11 10 9 13 13 C 1.50698 * 120.03212 * 179.72425 * 12 11 10 14 14 C 1.50706 * 109.46822 * 264.99122 * 13 12 11 15 15 H 1.07996 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99616 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00680 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99766 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46676 * 120.00380 * 18 16 14 21 21 H 1.48495 * 109.46844 * 240.00749 * 18 16 14 22 22 H 1.08997 * 109.47239 * 270.00407 * 1 2 3 23 23 H 1.09003 * 109.46977 * 30.00311 * 1 2 3 24 24 H 1.09001 * 109.47154 * 150.00365 * 1 2 3 25 25 H 1.08991 * 110.54753 * 118.59212 * 4 3 2 26 26 H 1.09003 * 110.54703 * 241.26373 * 4 3 2 27 27 H 1.09000 * 110.80269 * 241.92865 * 5 4 3 28 28 H 1.08996 * 110.59039 * 118.71936 * 5 4 3 29 29 H 1.07997 * 120.03871 * 359.95265 * 8 7 6 30 30 H 1.07994 * 119.96579 * 179.97438 * 9 8 7 31 31 H 1.08000 * 119.92421 * 180.02562 * 10 9 8 32 32 H 1.08002 * 119.96124 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47406 * 24.99091 * 13 12 11 34 34 H 1.09000 * 109.46981 * 144.99436 * 13 12 11 35 35 H 0.96997 * 120.00457 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2004 1.0790 0.0000 4 6 3.6352 0.7603 0.0006 5 6 3.6711 -0.7814 0.0075 6 7 2.2446 -1.1479 0.0005 7 6 1.7336 -2.4496 0.0006 8 6 1.4801 -3.0980 -1.2015 9 6 0.9760 -4.3836 -1.1980 10 6 0.7239 -5.0258 0.0007 11 6 0.9751 -4.3833 1.1990 12 6 1.4734 -3.0950 1.2024 13 6 1.7410 -2.3933 2.5089 14 6 0.5490 -1.5486 2.8787 15 1 -0.3159 -1.5228 2.2325 16 6 0.5623 -0.8095 4.0425 17 7 1.6154 -0.8412 4.8297 18 14 -0.9155 0.2371 4.5013 19 1 -1.9624 0.1001 3.4570 20 1 -1.4572 -0.2170 5.8073 21 1 -0.5018 1.6595 4.6044 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 4.1148 1.1540 -0.8954 26 1 4.1147 1.1566 0.8957 27 1 4.1600 -1.1532 0.9080 28 1 4.1697 -1.1572 -0.8859 29 1 1.6767 -2.5971 -2.1379 30 1 0.7783 -4.8880 -2.1322 31 1 0.3300 -6.0314 0.0007 32 1 0.7768 -4.8875 2.1332 33 1 1.9180 -3.1334 3.2893 34 1 2.6197 -1.7565 2.4059 35 1 1.6249 -0.3209 5.6483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:16 Heat of formation + Delta-G solvation = 39.271698 kcal Electronic energy + Delta-G solvation = -17863.915019 eV Core-core repulsion = 15247.249578 eV Total energy + Delta-G solvation = -2616.665441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52621 -39.51804 -35.46977 -34.18892 -32.90789 -32.65798 -30.15569 -28.85923 -27.80397 -25.29921 -23.94452 -22.86790 -22.01118 -20.01866 -18.56089 -18.04591 -17.19487 -16.85691 -16.18968 -15.75806 -15.63197 -15.06185 -14.52607 -14.28392 -14.10126 -13.97937 -13.39264 -13.23286 -13.19266 -13.04994 -13.03436 -12.81745 -12.66768 -12.40472 -12.09462 -11.63341 -11.41134 -11.27738 -10.88097 -10.59580 -9.64149 -9.36936 -8.79688 -8.18959 -6.27957 0.42890 0.62127 1.35176 1.38396 1.47965 1.66425 2.26994 2.38307 2.93142 3.14772 3.55883 3.75369 4.08297 4.15525 4.24814 4.33678 4.38918 4.55368 4.61322 4.62349 4.72041 4.81207 4.91403 4.96001 5.00039 5.17537 5.25286 5.34161 5.40671 5.55186 5.63552 5.68269 5.77930 6.00296 6.09596 6.21333 6.82624 6.91006 7.15769 7.38927 8.91197 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.010972 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.889541 B = 2551.315943 C = 3365.680449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.394 3.606 3 N -0.624 5.624 4 C 0.030 3.970 5 C 0.084 3.916 6 N -0.590 5.590 7 C 0.127 3.873 8 C -0.113 4.113 9 C -0.123 4.123 10 C -0.105 4.105 11 C -0.134 4.134 12 C -0.067 4.067 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.063 0.937 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.945 3.055 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.288 1.288 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.116 0.884 33 H -0.006 1.006 34 H -0.006 1.006 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -5.549 -13.443 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.119 3.881 3 N -0.354 5.354 4 C -0.099 4.099 5 C -0.039 4.039 6 N -0.308 5.308 7 C 0.036 3.964 8 C -0.132 4.132 9 C -0.142 4.142 10 C -0.123 4.123 11 C -0.152 4.152 12 C -0.068 4.068 13 C 0.030 3.970 14 C -0.536 4.536 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.573 5.573 18 Si 0.771 3.229 19 H -0.175 1.175 20 H -0.205 1.205 21 H -0.214 1.214 22 H 0.095 0.905 23 H 0.116 0.884 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.114 0.886 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.170 0.830 32 H 0.134 0.866 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.898 -4.596 -13.296 14.096 hybrid contribution 0.178 -0.008 1.353 1.365 sum -0.720 -4.604 -11.943 12.819 Atomic orbital electron populations 1.20684 0.86405 1.04185 1.04034 1.23203 0.95893 0.82411 0.86570 1.74061 1.03536 1.24688 1.33102 1.23009 0.92296 0.92110 1.02503 1.22662 0.82422 0.97012 1.01768 1.45161 1.05248 1.02962 1.77384 1.17289 1.02097 0.84264 0.92701 1.21492 0.99484 0.95833 0.96404 1.21286 0.99813 0.93921 0.99135 1.21477 0.98552 1.00818 0.91428 1.21119 1.00768 0.93973 0.99367 1.20790 0.95784 0.94590 0.95658 1.17937 0.96151 0.93764 0.89183 1.21252 1.01169 1.25657 1.05556 0.91843 1.25778 0.98500 0.98174 0.96616 1.70082 1.30854 1.42735 1.13656 0.85677 0.80241 0.78277 0.78752 1.17509 1.20519 1.21404 0.90496 0.88389 0.89795 0.87885 0.91632 0.93241 0.88630 0.84669 0.82280 0.82986 0.86638 0.98793 0.98767 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.42 9.77 71.24 0.70 -2.72 16 2 C 0.39 15.91 7.65 138.31 1.06 16.97 16 3 N -0.62 -26.00 11.58 -335.40 -3.88 -29.88 16 4 C 0.03 1.08 8.05 86.70 0.70 1.78 16 5 C 0.08 2.96 7.48 86.64 0.65 3.60 16 6 N -0.59 -22.78 2.13 -502.40 -1.07 -23.85 16 7 C 0.13 4.69 4.85 38.18 0.19 4.88 16 8 C -0.11 -3.18 9.97 22.40 0.22 -2.96 16 9 C -0.12 -2.88 10.04 22.25 0.22 -2.66 16 10 C -0.11 -2.72 10.04 22.29 0.22 -2.50 16 11 C -0.13 -4.69 9.68 22.25 0.22 -4.48 16 12 C -0.07 -2.78 5.09 -19.74 -0.10 -2.88 16 13 C 0.07 3.50 4.80 29.10 0.14 3.64 16 14 C -0.50 -27.27 8.29 25.60 0.21 -27.06 16 15 H 0.06 3.35 6.27 -2.91 -0.02 3.33 16 16 C 0.01 0.39 5.46 84.65 0.46 0.85 16 17 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 18 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 19 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H 0.08 3.20 6.05 -2.39 -0.01 3.18 16 23 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 24 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 25 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.05 1.92 7.59 -2.39 -0.02 1.90 16 28 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 33 H -0.01 -0.36 8.05 -2.39 -0.02 -0.38 16 34 H -0.01 -0.35 6.85 -2.39 -0.02 -0.36 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -67.94 294.54 3.32 -64.62 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.07 Total: 12.74 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.89 Total: -13.54 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.67 Total: -110.46 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.94 3.32 -64.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.894 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds