Wall clock time and date at job start Mon Mar 30 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47056 * 2 1 4 4 N 1.30898 * 125.31150 * 89.97583 * 3 2 1 5 5 C 1.33407 * 109.86691 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.26824 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46817 * 90.02712 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00390 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46946 * 59.99892 * 11 9 7 13 13 H 1.48496 * 109.46933 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46921 * 299.99575 * 11 9 7 15 15 C 1.37988 * 107.46283 * 0.24126 * 5 4 3 16 16 C 1.40969 * 133.70872 * 180.45156 * 15 5 4 17 17 C 1.35880 * 119.17664 * 179.57246 * 16 15 5 18 18 C 1.50699 * 120.11400 * 179.78485 * 17 16 15 19 19 C 1.40822 * 119.77211 * 359.76718 * 17 16 15 20 20 C 1.34671 * 120.61695 * 0.02562 * 19 17 16 21 21 N 1.35031 * 125.31296 * 270.02112 * 3 2 1 22 22 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47092 * 299.99614 * 1 2 3 24 24 H 1.08993 * 109.47405 * 60.00296 * 1 2 3 25 25 H 1.09004 * 109.47092 * 240.00385 * 2 1 3 26 26 H 1.08998 * 109.47840 * 119.99872 * 2 1 3 27 27 H 1.09000 * 109.47318 * 210.02092 * 6 5 4 28 28 H 1.09000 * 109.47161 * 330.02722 * 6 5 4 29 29 H 0.96992 * 120.00038 * 179.97438 * 10 9 7 30 30 H 1.07996 * 120.41173 * 359.34461 * 16 15 5 31 31 H 1.08998 * 109.47380 * 269.98034 * 18 17 16 32 32 H 1.08998 * 109.47373 * 29.98404 * 18 17 16 33 33 H 1.09002 * 109.46977 * 149.97867 * 18 17 16 34 34 H 1.07997 * 119.68942 * 179.97438 * 19 17 16 35 35 H 1.07999 * 119.71769 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2841 2.1343 1.0682 5 6 2.7123 3.3468 0.7129 6 6 3.1055 4.4625 1.6467 7 6 4.5765 4.3617 1.9582 8 1 5.1674 3.5689 1.5238 9 6 5.1678 5.2810 2.7985 10 7 4.4481 6.2462 3.3279 11 14 6.9914 5.1566 3.1841 12 1 7.7720 5.2668 1.9257 13 1 7.3788 6.2558 4.1043 14 1 7.2729 3.8486 3.8285 15 6 2.7235 3.3944 -0.6661 16 6 3.0792 4.3852 -1.6038 17 6 2.9818 4.1073 -2.9303 18 6 3.3519 5.1524 -3.9509 19 6 2.5341 2.8392 -3.3480 20 6 2.2005 1.8977 -2.4447 21 7 2.2921 2.1569 -1.1019 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.8994 5.4224 1.1731 28 1 2.5322 4.3824 2.5702 29 1 4.8640 6.8928 3.9194 30 1 3.4214 5.3542 -1.2719 31 1 2.4722 5.7468 -4.1978 32 1 4.1260 5.8017 -3.5418 33 1 3.7254 4.6647 -4.8513 34 1 2.4568 2.6199 -4.4027 35 1 1.8593 0.9299 -2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259944470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:42 Heat of formation + Delta-G solvation = 62.005109 kcal Electronic energy + Delta-G solvation = -17104.559705 eV Core-core repulsion = 14488.880059 eV Total energy + Delta-G solvation = -2615.679647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19628 -37.37992 -34.42378 -33.15057 -32.72924 -30.26772 -29.73400 -27.96185 -25.60015 -23.69676 -23.14643 -22.31659 -20.34298 -19.61120 -16.75864 -16.26096 -16.07385 -15.32025 -14.94062 -14.65338 -14.33320 -13.93487 -13.67736 -13.32437 -12.61352 -12.30187 -12.29354 -12.07747 -11.81177 -11.55088 -11.27085 -11.07689 -11.02250 -10.97070 -10.65959 -10.56758 -9.97123 -9.76732 -9.28827 -9.18601 -8.66486 -8.33612 -6.63824 -5.94006 -3.97996 1.27688 1.74832 3.13480 3.37614 3.40952 3.44618 3.63976 4.00776 4.52725 4.69655 4.72041 4.99871 5.07652 5.24881 5.34300 5.37230 5.39117 5.49268 5.54858 5.73080 5.78902 5.83887 5.96492 6.05907 6.12067 6.24090 6.28145 6.36907 6.50287 6.77825 7.11045 7.39868 7.57496 7.70913 7.84514 8.00316 8.41765 8.75097 9.04605 9.64215 11.14231 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.007577 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.604633 B = 3694.290454 C = 4727.074761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 C 0.152 3.848 4 N -0.452 5.452 5 C 0.084 3.916 6 C 0.094 3.906 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C -0.030 4.030 16 C -0.030 4.030 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.126 4.126 20 C 0.033 3.967 21 N -0.370 5.370 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.262 0.738 30 H 0.145 0.855 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 -7.941 -14.106 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 C -0.102 4.102 4 N -0.168 5.168 5 C -0.053 4.053 6 C 0.057 3.943 7 C -0.543 4.543 8 H 0.071 0.929 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.135 4.135 16 C -0.050 4.050 17 C -0.142 4.142 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.086 4.086 21 N -0.043 5.043 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.162 0.838 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.887 -8.211 -13.190 16.615 hybrid contribution 1.159 0.153 -0.654 1.340 sum -4.727 -8.058 -13.844 16.702 Atomic orbital electron populations 1.21748 0.94482 1.01608 1.02523 1.19810 0.95919 0.87583 1.03413 1.23085 1.09992 0.97076 0.80041 1.69976 1.15535 1.04376 1.26873 1.22148 0.98943 0.94266 0.89918 1.17692 0.96403 0.88033 0.92221 1.20974 0.93123 1.12159 1.27996 0.92856 1.24959 0.98103 0.95321 0.95834 1.69943 1.35836 1.15649 1.32103 0.86611 0.85320 0.77632 0.78200 1.20297 1.21208 1.20230 1.19444 1.11789 0.86860 0.95376 1.20477 0.95745 0.98164 0.90647 1.19545 1.04730 0.95631 0.94317 1.20612 1.01350 0.96858 0.96902 1.20523 1.02038 0.93213 0.98954 1.21319 1.05256 1.00881 0.81164 1.42612 1.43697 1.12608 1.05402 0.92057 0.91730 0.93163 0.91190 0.88862 0.94864 0.94490 0.92840 0.83773 0.91699 0.91451 0.92069 0.84604 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.03 -0.38 6.38 -27.88 -0.18 -0.56 16 3 C 0.15 2.90 7.21 -155.09 -1.12 1.78 16 4 N -0.45 -10.62 11.19 -6.40 -0.07 -10.69 16 5 C 0.08 2.07 6.40 -82.00 -0.52 1.55 16 6 C 0.09 2.60 5.53 -29.03 -0.16 2.44 16 7 C -0.50 -14.81 9.09 -34.44 -0.31 -15.12 16 8 H 0.05 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 11 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 C -0.03 -0.64 6.74 -84.09 -0.57 -1.21 16 16 C -0.03 -0.56 9.74 -39.39 -0.38 -0.95 16 17 C -0.14 -2.09 5.89 -104.49 -0.62 -2.71 16 18 C -0.10 -1.14 10.02 36.00 0.36 -0.78 16 19 C -0.13 -1.65 9.66 -39.87 -0.39 -2.03 16 20 C 0.03 0.47 10.80 -16.47 -0.18 0.30 16 21 N -0.37 -6.85 2.94 -58.16 -0.17 -7.02 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.14 2.66 8.06 -52.49 -0.42 2.24 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.15 1.56 7.98 -52.49 -0.42 1.14 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -33.44 302.46 -8.78 -42.22 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.02 Total: -3.01 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.79 Total: -17.00 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.49 Total: -43.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.44 -8.78 -42.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.228 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds