Wall clock time and date at job start Mon Mar 30 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47056 * 2 1 4 4 N 1.30898 * 125.31150 * 89.97583 * 3 2 1 5 5 C 1.33407 * 109.86691 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.26824 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46817 * 90.02712 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00390 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46946 * 59.99892 * 11 9 7 13 13 H 1.48496 * 109.46933 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46921 * 299.99575 * 11 9 7 15 15 C 1.37988 * 107.46283 * 0.24126 * 5 4 3 16 16 C 1.40969 * 133.70872 * 180.45156 * 15 5 4 17 17 C 1.35880 * 119.17664 * 179.57246 * 16 15 5 18 18 C 1.50699 * 120.11400 * 179.78485 * 17 16 15 19 19 C 1.40822 * 119.77211 * 359.76718 * 17 16 15 20 20 C 1.34671 * 120.61695 * 0.02562 * 19 17 16 21 21 N 1.35031 * 125.31296 * 270.02112 * 3 2 1 22 22 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47092 * 299.99614 * 1 2 3 24 24 H 1.08993 * 109.47405 * 60.00296 * 1 2 3 25 25 H 1.09004 * 109.47092 * 240.00385 * 2 1 3 26 26 H 1.08998 * 109.47840 * 119.99872 * 2 1 3 27 27 H 1.09000 * 109.47318 * 210.02092 * 6 5 4 28 28 H 1.09000 * 109.47161 * 330.02722 * 6 5 4 29 29 H 0.96992 * 120.00038 * 179.97438 * 10 9 7 30 30 H 1.07996 * 120.41173 * 359.34461 * 16 15 5 31 31 H 1.08998 * 109.47380 * 269.98034 * 18 17 16 32 32 H 1.08998 * 109.47373 * 29.98404 * 18 17 16 33 33 H 1.09002 * 109.46977 * 149.97867 * 18 17 16 34 34 H 1.07997 * 119.68942 * 179.97438 * 19 17 16 35 35 H 1.07999 * 119.71769 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2841 2.1343 1.0682 5 6 2.7123 3.3468 0.7129 6 6 3.1055 4.4625 1.6467 7 6 4.5765 4.3617 1.9582 8 1 5.1674 3.5689 1.5238 9 6 5.1678 5.2810 2.7985 10 7 4.4481 6.2462 3.3279 11 14 6.9914 5.1566 3.1841 12 1 7.7720 5.2668 1.9257 13 1 7.3788 6.2558 4.1043 14 1 7.2729 3.8486 3.8285 15 6 2.7235 3.3944 -0.6661 16 6 3.0792 4.3852 -1.6038 17 6 2.9818 4.1073 -2.9303 18 6 3.3519 5.1524 -3.9509 19 6 2.5341 2.8392 -3.3480 20 6 2.2005 1.8977 -2.4447 21 7 2.2921 2.1569 -1.1019 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.8994 5.4224 1.1731 28 1 2.5322 4.3824 2.5702 29 1 4.8640 6.8928 3.9194 30 1 3.4214 5.3542 -1.2719 31 1 2.4722 5.7468 -4.1978 32 1 4.1260 5.8017 -3.5418 33 1 3.7254 4.6647 -4.8513 34 1 2.4568 2.6199 -4.4027 35 1 1.8593 0.9299 -2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:42 Heat of formation + Delta-G solvation = 42.179195 kcal Electronic energy + Delta-G solvation = -17105.419422 eV Core-core repulsion = 14488.880059 eV Total energy + Delta-G solvation = -2616.539363 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.65548 -38.69063 -36.04257 -34.72685 -34.28290 -31.69750 -31.34591 -29.45371 -27.05932 -25.43752 -24.45417 -23.72256 -21.62771 -21.24260 -18.57806 -18.08286 -17.33630 -16.80773 -16.61255 -16.08837 -15.74023 -15.06345 -14.79561 -14.45643 -14.35782 -14.08560 -13.49945 -13.42800 -13.25239 -12.87009 -12.83002 -12.62644 -12.51012 -12.33009 -12.20876 -12.02680 -11.87633 -11.57032 -11.03954 -10.97265 -10.60798 -10.05887 -8.33630 -7.96694 -6.33865 -0.00663 0.40031 1.35237 1.39911 1.48162 1.79506 2.16754 2.39981 2.56408 3.08325 3.45566 3.62426 3.86155 3.92653 4.02991 4.24441 4.31156 4.37330 4.46930 4.65626 4.78980 4.86148 4.87305 4.93728 4.97000 5.05602 5.16625 5.22078 5.25492 5.32081 5.47689 5.60389 5.70093 5.74652 5.82349 6.18903 6.48682 6.73803 7.16592 7.33196 8.89083 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.007577 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.604633 B = 3694.290454 C = 4727.074761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C 0.151 3.849 4 N -0.497 5.497 5 C 0.009 3.991 6 C 0.113 3.887 7 C -0.524 4.524 8 H 0.041 0.959 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.968 3.032 12 H -0.265 1.265 13 H -0.272 1.272 14 H -0.273 1.273 15 C -0.022 4.022 16 C -0.098 4.098 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.128 4.128 20 C 0.036 3.964 21 N -0.371 5.371 22 H 0.096 0.904 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.011 0.989 28 H -0.005 1.005 29 H 0.268 0.732 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.192 0.808 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -10.118 -18.155 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.105 4.105 4 N -0.212 5.212 5 C -0.125 4.125 6 C 0.075 3.925 7 C -0.562 4.562 8 H 0.059 0.941 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.198 1.198 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.098 4.098 18 C -0.160 4.160 19 C -0.148 4.148 20 C -0.082 4.082 21 N -0.044 5.044 22 H 0.115 0.885 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.108 0.892 27 H 0.029 0.971 28 H 0.013 0.987 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.491 -10.382 -17.239 20.859 hybrid contribution 0.947 0.800 0.353 1.289 sum -4.544 -9.582 -16.886 19.940 Atomic orbital electron populations 1.21707 0.92913 1.03525 1.01481 1.20093 0.97082 0.84156 1.05137 1.23994 1.08734 0.98542 0.79190 1.69755 1.16910 1.04628 1.29929 1.21505 1.04985 0.94756 0.91291 1.17197 0.95277 0.88960 0.91099 1.21191 0.94174 1.12202 1.28674 0.94060 1.25910 1.03424 0.94572 0.95209 1.70071 1.38082 1.16279 1.32446 0.85473 0.78880 0.77979 0.78539 1.19013 1.19713 1.19841 1.19466 1.10292 0.88671 0.94522 1.20451 1.01348 0.97737 0.92310 1.20178 0.99206 0.97184 0.93208 1.20778 1.02151 0.96256 0.96841 1.21196 1.00519 0.91570 1.01546 1.22392 1.03455 1.03396 0.78965 1.42828 1.43116 1.11205 1.07202 0.88543 0.94461 0.92575 0.87313 0.89184 0.97054 0.98701 0.92362 0.85776 0.89777 0.92054 0.88646 0.79071 0.77917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.89 71.98 0.71 -2.17 16 2 C -0.03 -0.64 6.38 29.85 0.19 -0.45 16 3 C 0.15 5.76 7.21 138.02 1.00 6.76 16 4 N -0.50 -24.95 11.19 -174.15 -1.95 -26.90 16 5 C 0.01 0.48 6.40 42.26 0.27 0.75 16 6 C 0.11 6.91 5.53 29.10 0.16 7.07 16 7 C -0.52 -33.18 9.09 25.60 0.23 -32.95 16 8 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.01 0.42 5.46 84.65 0.46 0.89 16 10 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16 11 Si 0.97 47.02 29.54 68.60 2.03 49.04 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 15 C -0.02 -1.00 6.74 38.76 0.26 -0.73 16 16 C -0.10 -3.80 9.74 22.39 0.22 -3.58 16 17 C -0.09 -2.58 5.89 -19.78 -0.12 -2.70 16 18 C -0.10 -1.97 10.02 71.24 0.71 -1.26 16 19 C -0.13 -2.66 9.66 22.08 0.21 -2.44 16 20 C 0.04 0.86 10.80 83.06 0.90 1.76 16 21 N -0.37 -13.36 2.94 -337.91 -0.99 -14.35 16 22 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 1.86 8.04 -2.38 -0.02 1.85 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 29 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.20 2.68 7.98 -2.91 -0.02 2.65 16 Total: -1.00 -82.40 302.46 5.64 -76.76 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.06 Total: 3.18 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 5.21 Total: -29.06 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -2.66 Total: -99.92 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -82.40 5.64 -76.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.935 kcal (2) G-P(sol) polarization free energy of solvation -82.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds