Wall clock time and date at job start Mon Mar 30 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30898 * 125.30923 * 2 1 4 4 C 1.33404 * 109.86737 * 180.25915 * 3 2 1 5 5 C 1.50700 * 126.27024 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47366 * 270.06074 * 5 4 3 7 7 C 1.50690 * 109.47370 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00203 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99982 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99841 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47188 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47165 * 120.00434 * 11 9 7 14 14 H 1.48497 * 109.47293 * 240.00237 * 11 9 7 15 15 C 1.37994 * 107.46207 * 0.02562 * 4 3 2 16 16 C 1.40965 * 133.71145 * 180.02562 * 15 4 3 17 17 C 1.35881 * 119.17632 * 179.97438 * 16 15 4 18 18 C 1.50696 * 120.11621 * 179.97438 * 17 16 15 19 19 C 1.40815 * 119.77037 * 0.02562 * 17 16 15 20 20 C 1.34664 * 120.61974 * 359.97438 * 19 17 16 21 21 N 1.35034 * 125.31551 * 180.30193 * 2 1 3 22 22 H 1.09006 * 109.47041 * 269.69624 * 1 2 3 23 23 H 1.08998 * 109.47390 * 29.69572 * 1 2 3 24 24 H 1.09002 * 109.46794 * 149.69748 * 1 2 3 25 25 H 1.09000 * 109.47058 * 30.05340 * 5 4 3 26 26 H 1.08992 * 109.47492 * 150.06045 * 5 4 3 27 27 H 1.09005 * 109.46872 * 299.99804 * 6 5 4 28 28 H 1.08997 * 109.47280 * 59.99412 * 6 5 4 29 29 H 0.96993 * 120.00370 * 179.97438 * 10 9 7 30 30 H 1.08000 * 120.41420 * 0.02562 * 16 15 4 31 31 H 1.08998 * 109.46836 * 90.00224 * 18 17 16 32 32 H 1.08996 * 109.47463 * 210.00329 * 18 17 16 33 33 H 1.09006 * 109.46935 * 330.01011 * 18 17 16 34 34 H 1.08004 * 119.68808 * 179.97438 * 19 17 16 35 35 H 1.08001 * 119.72056 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0682 0.0000 4 6 3.5495 0.7130 -0.0057 5 6 4.7324 1.6468 -0.0081 6 6 5.1263 1.9672 -1.4514 7 6 6.3086 2.9013 -1.4539 8 1 6.7362 3.2338 -0.5195 9 6 6.8447 3.3318 -2.6491 10 7 6.3238 2.9275 -3.7870 11 14 8.3100 4.4904 -2.6521 12 1 8.7041 4.7936 -1.2529 13 1 9.4475 3.8481 -3.3583 14 1 7.9435 5.7502 -3.3477 15 6 3.5981 -0.6661 -0.0100 16 6 4.6508 -1.6037 -0.0162 17 6 4.3563 -2.9302 -0.0188 18 6 5.4650 -3.9508 -0.0260 19 6 3.0115 -3.3479 -0.0159 20 6 2.0128 -2.4446 -0.0100 21 7 2.2877 -1.1018 -0.0058 22 1 -0.3633 -0.0054 1.0277 23 1 -0.3634 0.8927 -0.5091 24 1 -0.3633 -0.8873 -0.5185 25 1 4.4683 2.5689 0.5095 26 1 5.5712 1.1719 0.5005 27 1 5.3903 1.0450 -1.9692 28 1 4.2874 2.4420 -1.9602 29 1 6.7006 3.2306 -4.6278 30 1 5.6785 -1.2718 -0.0180 31 1 5.7362 -4.1998 0.9999 32 1 5.1277 -4.8502 -0.5411 33 1 6.3332 -3.5405 -0.5419 34 1 2.7790 -4.4026 -0.0184 35 1 0.9865 -2.7811 -0.0074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:58 Heat of formation + Delta-G solvation = 61.165026 kcal Electronic energy + Delta-G solvation = -16878.531192 eV Core-core repulsion = 14262.815116 eV Total energy + Delta-G solvation = -2615.716075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.45882 -37.60041 -34.65202 -33.15651 -31.96142 -30.70402 -29.78160 -28.33695 -26.03361 -23.96452 -23.19625 -21.42366 -20.83438 -19.54162 -16.97031 -16.33341 -16.21911 -15.69513 -15.00891 -14.58170 -14.38540 -13.67855 -13.57777 -12.87834 -12.79043 -12.68439 -12.44012 -12.33374 -12.05109 -11.82287 -11.47406 -11.34001 -10.89794 -10.83170 -10.53356 -10.09274 -9.92996 -9.59415 -9.35058 -8.99915 -8.90902 -8.27158 -6.87182 -5.91848 -3.94505 1.04416 1.50720 2.89068 3.36256 3.38314 3.43442 3.47958 3.70209 4.51691 4.53411 4.62183 4.82948 4.92932 5.08833 5.21755 5.37747 5.43591 5.52897 5.59068 5.62424 5.71371 5.81733 5.92210 5.94156 6.12092 6.20195 6.52365 6.65983 6.76000 6.86460 6.95599 7.25798 7.53154 7.78642 7.92686 8.09951 8.40700 8.49389 9.13092 9.68825 11.19345 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.005919 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.747199 B = 4729.677707 C = 5561.685831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.154 3.846 3 N -0.449 5.449 4 C 0.054 3.946 5 C -0.032 4.032 6 C 0.032 3.968 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C -0.016 4.016 16 C -0.045 4.045 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.126 4.126 20 C 0.038 3.962 21 N -0.369 5.369 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.146 0.854 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -14.587 8.321 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 N -0.164 5.164 4 C -0.082 4.082 5 C -0.070 4.070 6 C -0.006 4.006 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.122 4.122 16 C -0.065 4.065 17 C -0.126 4.126 18 C -0.161 4.161 19 C -0.148 4.148 20 C -0.081 4.081 21 N -0.042 5.042 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.898 -13.770 8.142 18.305 hybrid contribution 0.967 -0.280 -0.263 1.041 sum -7.930 -14.050 7.879 17.955 Atomic orbital electron populations 1.20070 0.84930 1.03730 1.02900 1.23135 0.95442 0.79763 1.11718 1.69926 1.02512 1.27166 1.16830 1.21631 0.93041 0.89815 1.03750 1.20169 0.89755 0.95259 1.01846 1.19048 0.96220 0.96518 0.88801 1.21292 1.14119 1.27844 0.92363 0.92452 1.25023 0.97242 0.96529 0.95663 1.69992 1.41263 1.44982 0.97220 0.86546 0.82639 0.80811 0.78067 1.19675 1.21108 1.21056 1.19380 0.83593 0.95128 1.14070 1.20467 0.98246 0.90828 0.96998 1.19619 0.94469 0.94342 1.04184 1.20662 0.96354 0.96993 1.02069 1.20600 0.91816 0.99265 1.03074 1.21406 1.00607 0.80871 1.05232 1.42656 1.08176 1.05671 1.47740 0.90701 0.89121 0.91400 0.91476 0.91915 0.96728 0.96269 0.93146 0.83675 0.91437 0.91758 0.91194 0.84197 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.33 36.01 0.37 -0.30 16 2 C 0.15 2.66 7.96 -155.09 -1.23 1.42 16 3 N -0.45 -9.51 11.19 -6.40 -0.07 -9.59 16 4 C 0.05 1.17 6.46 -82.00 -0.53 0.64 16 5 C -0.03 -0.73 5.71 -27.88 -0.16 -0.89 16 6 C 0.03 0.88 4.95 -27.89 -0.14 0.74 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 C -0.02 -0.30 6.74 -84.10 -0.57 -0.87 16 16 C -0.05 -0.75 9.74 -39.39 -0.38 -1.13 16 17 C -0.12 -1.63 5.89 -104.50 -0.62 -2.25 16 18 C -0.10 -1.03 10.02 36.00 0.36 -0.67 16 19 C -0.13 -1.45 9.66 -39.87 -0.39 -1.84 16 20 C 0.04 0.48 10.80 -16.48 -0.18 0.30 16 21 N -0.37 -6.16 2.94 -58.16 -0.17 -6.34 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 25 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.16 1.32 7.99 -52.49 -0.42 0.90 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -34.78 302.49 -8.86 -43.64 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.02 Total: -3.59 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.87 Total: -18.69 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.49 Total: -42.98 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.78 -8.86 -43.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.802 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds