Wall clock time and date at job start Mon Mar 30 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30898 * 125.30923 * 2 1 4 4 C 1.33404 * 109.86737 * 180.25915 * 3 2 1 5 5 C 1.50700 * 126.27024 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47366 * 270.06074 * 5 4 3 7 7 C 1.50690 * 109.47370 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00203 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99982 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99841 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47188 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47165 * 120.00434 * 11 9 7 14 14 H 1.48497 * 109.47293 * 240.00237 * 11 9 7 15 15 C 1.37994 * 107.46207 * 0.02562 * 4 3 2 16 16 C 1.40965 * 133.71145 * 180.02562 * 15 4 3 17 17 C 1.35881 * 119.17632 * 179.97438 * 16 15 4 18 18 C 1.50696 * 120.11621 * 179.97438 * 17 16 15 19 19 C 1.40815 * 119.77037 * 0.02562 * 17 16 15 20 20 C 1.34664 * 120.61974 * 359.97438 * 19 17 16 21 21 N 1.35034 * 125.31551 * 180.30193 * 2 1 3 22 22 H 1.09006 * 109.47041 * 269.69624 * 1 2 3 23 23 H 1.08998 * 109.47390 * 29.69572 * 1 2 3 24 24 H 1.09002 * 109.46794 * 149.69748 * 1 2 3 25 25 H 1.09000 * 109.47058 * 30.05340 * 5 4 3 26 26 H 1.08992 * 109.47492 * 150.06045 * 5 4 3 27 27 H 1.09005 * 109.46872 * 299.99804 * 6 5 4 28 28 H 1.08997 * 109.47280 * 59.99412 * 6 5 4 29 29 H 0.96993 * 120.00370 * 179.97438 * 10 9 7 30 30 H 1.08000 * 120.41420 * 0.02562 * 16 15 4 31 31 H 1.08998 * 109.46836 * 90.00224 * 18 17 16 32 32 H 1.08996 * 109.47463 * 210.00329 * 18 17 16 33 33 H 1.09006 * 109.46935 * 330.01011 * 18 17 16 34 34 H 1.08004 * 119.68808 * 179.97438 * 19 17 16 35 35 H 1.08001 * 119.72056 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0682 0.0000 4 6 3.5495 0.7130 -0.0057 5 6 4.7324 1.6468 -0.0081 6 6 5.1263 1.9672 -1.4514 7 6 6.3086 2.9013 -1.4539 8 1 6.7362 3.2338 -0.5195 9 6 6.8447 3.3318 -2.6491 10 7 6.3238 2.9275 -3.7870 11 14 8.3100 4.4904 -2.6521 12 1 8.7041 4.7936 -1.2529 13 1 9.4475 3.8481 -3.3583 14 1 7.9435 5.7502 -3.3477 15 6 3.5981 -0.6661 -0.0100 16 6 4.6508 -1.6037 -0.0162 17 6 4.3563 -2.9302 -0.0188 18 6 5.4650 -3.9508 -0.0260 19 6 3.0115 -3.3479 -0.0159 20 6 2.0128 -2.4446 -0.0100 21 7 2.2877 -1.1018 -0.0058 22 1 -0.3633 -0.0054 1.0277 23 1 -0.3634 0.8927 -0.5091 24 1 -0.3633 -0.8873 -0.5185 25 1 4.4683 2.5689 0.5095 26 1 5.5712 1.1719 0.5005 27 1 5.3903 1.0450 -1.9692 28 1 4.2874 2.4420 -1.9602 29 1 6.7006 3.2306 -4.6278 30 1 5.6785 -1.2718 -0.0180 31 1 5.7362 -4.1998 0.9999 32 1 5.1277 -4.8502 -0.5411 33 1 6.3332 -3.5405 -0.5419 34 1 2.7790 -4.4026 -0.0184 35 1 0.9865 -2.7811 -0.0074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:57 Heat of formation + Delta-G solvation = 40.568148 kcal Electronic energy + Delta-G solvation = -16879.424339 eV Core-core repulsion = 14262.815116 eV Total energy + Delta-G solvation = -2616.609223 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.74171 -38.75529 -36.33248 -34.94098 -33.39413 -32.29848 -30.99430 -29.36141 -27.89551 -25.46097 -24.39243 -23.22762 -22.02431 -21.10182 -18.61479 -18.07560 -17.42978 -17.02459 -16.47890 -16.10339 -15.75365 -15.02101 -14.62577 -14.44651 -14.33300 -14.02250 -13.68842 -13.46701 -13.30485 -13.16329 -12.87367 -12.79750 -12.59159 -12.31636 -12.28654 -11.92149 -11.62417 -11.31547 -11.13172 -10.99677 -10.58108 -10.13119 -8.25106 -8.11063 -6.33351 -0.07760 0.31801 1.39506 1.41392 1.55275 1.71998 2.05251 2.40960 2.47123 3.12057 3.45645 3.55340 3.82070 3.84681 3.93855 4.21262 4.39735 4.50040 4.53223 4.69730 4.72973 4.83124 4.85023 4.88321 4.92034 4.99244 5.07083 5.16556 5.23544 5.45411 5.50449 5.62243 5.67385 5.75683 5.81136 6.20840 6.38477 6.82936 7.02147 7.36039 8.92484 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.005919 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.747199 B = 4729.677707 C = 5561.685831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.147 3.853 3 N -0.493 5.493 4 C -0.015 4.015 5 C -0.012 4.012 6 C 0.047 3.953 7 C -0.542 4.542 8 H 0.065 0.935 9 C -0.003 4.003 10 N -0.937 5.937 11 Si 0.973 3.027 12 H -0.259 1.259 13 H -0.274 1.274 14 H -0.278 1.278 15 C -0.011 4.011 16 C -0.107 4.107 17 C -0.088 4.088 18 C -0.107 4.107 19 C -0.129 4.129 20 C 0.039 3.961 21 N -0.373 5.373 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.071 0.929 27 H -0.014 1.014 28 H -0.024 1.024 29 H 0.264 0.736 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.192 0.808 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 -17.458 9.105 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 N -0.209 5.209 4 C -0.149 4.149 5 C -0.051 4.051 6 C 0.010 3.990 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.200 4.200 10 N -0.577 5.577 11 Si 0.797 3.203 12 H -0.182 1.182 13 H -0.199 1.199 14 H -0.204 1.204 15 C -0.120 4.120 16 C -0.127 4.127 17 C -0.091 4.091 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.079 4.079 21 N -0.046 5.046 22 H 0.116 0.884 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.005 0.995 28 H -0.006 1.006 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.209 0.791 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.472 -16.640 8.942 21.132 hybrid contribution 1.063 0.351 -0.512 1.231 sum -8.409 -16.288 8.430 20.176 Atomic orbital electron populations 1.20301 0.80951 1.05156 1.04796 1.24056 0.97313 0.79103 1.10348 1.69755 1.02864 1.29921 1.18387 1.21261 0.92910 0.91091 1.09643 1.19741 0.91436 0.95592 0.98313 1.18798 0.94386 0.94525 0.91322 1.21701 1.14762 1.28440 0.93088 0.91631 1.26083 1.00670 0.98286 0.94959 1.70146 1.43098 1.46353 0.98099 0.85283 0.78204 0.78034 0.78805 1.18240 1.19944 1.20390 1.19512 0.85591 0.94568 1.12279 1.20526 0.97381 0.92245 1.02519 1.20222 0.96808 0.93494 0.98561 1.20809 0.95001 0.96843 1.03643 1.21243 0.90375 1.01675 1.01683 1.22435 1.03574 0.78850 1.03085 1.42907 1.06955 1.07354 1.47357 0.88441 0.89588 0.87995 0.92609 0.91018 0.99528 1.00604 0.92742 0.84819 0.89407 0.88872 0.91893 0.79114 0.77688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.14 10.33 71.24 0.74 -0.40 16 2 C 0.15 5.09 7.96 138.02 1.10 6.18 16 3 N -0.49 -22.23 11.19 -174.15 -1.95 -24.18 16 4 C -0.02 -0.70 6.46 42.26 0.27 -0.43 16 5 C -0.01 -0.62 5.71 29.85 0.17 -0.45 16 6 C 0.05 2.84 4.95 29.85 0.15 2.99 16 7 C -0.54 -33.20 9.11 25.60 0.23 -32.97 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 10 N -0.94 -60.50 13.29 21.45 0.28 -60.22 16 11 Si 0.97 46.22 29.54 68.60 2.03 48.24 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 C -0.01 -0.45 6.74 38.76 0.26 -0.19 16 16 C -0.11 -3.60 9.74 22.39 0.22 -3.38 16 17 C -0.09 -2.11 5.89 -19.78 -0.12 -2.23 16 18 C -0.11 -1.76 10.02 71.23 0.71 -1.04 16 19 C -0.13 -2.37 9.66 22.08 0.21 -2.15 16 20 C 0.04 0.81 10.80 83.06 0.90 1.71 16 21 N -0.37 -12.11 2.94 -337.92 -0.99 -13.11 16 22 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.10 1.43 8.05 -2.39 -0.02 1.41 16 25 H 0.06 2.80 8.14 -2.39 -0.02 2.79 16 26 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 27 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 28 H -0.02 -1.65 8.14 -2.39 -0.02 -1.67 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 33 H 0.06 1.17 8.08 -2.38 -0.02 1.15 16 34 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.21 2.17 7.99 -2.91 -0.02 2.15 16 Total: -1.00 -83.01 302.49 5.74 -77.27 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.06 Total: 4.05 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 5.31 Total: -32.07 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -2.66 Total: -97.50 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -83.01 5.74 -77.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.840 kcal (2) G-P(sol) polarization free energy of solvation -83.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds