Wall clock time and date at job start Mon Mar 30 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47265 * 2 1 4 4 N 1.30897 * 125.31942 * 270.02549 * 3 2 1 5 5 C 1.33398 * 109.87385 * 179.97438 * 4 3 2 6 6 C 1.37994 * 107.45983 * 359.97438 * 5 4 3 7 7 C 1.40969 * 133.71310 * 179.97438 * 6 5 4 8 8 C 1.50707 * 120.40845 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47334 * 84.99842 * 8 7 6 10 10 C 1.50697 * 109.47332 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99794 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99966 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00077 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99936 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46835 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47010 * 119.99782 * 14 12 10 17 17 H 1.48492 * 109.46983 * 240.00147 * 14 12 10 18 18 C 1.35871 * 119.17887 * 180.02562 * 7 6 5 19 19 C 1.40816 * 119.77225 * 359.76439 * 18 7 6 20 20 C 1.34663 * 120.61876 * 0.49661 * 19 18 7 21 21 N 1.35038 * 125.30921 * 90.00035 * 3 2 1 22 22 H 1.08999 * 109.47518 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47402 * 299.99826 * 1 2 3 24 24 H 1.09006 * 109.46720 * 59.99509 * 1 2 3 25 25 H 1.09001 * 109.46741 * 240.00447 * 2 1 3 26 26 H 1.08993 * 109.47069 * 120.00563 * 2 1 3 27 27 H 1.07993 * 126.27219 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.46629 * 204.99540 * 8 7 6 29 29 H 1.09001 * 109.46807 * 324.99724 * 8 7 6 30 30 H 1.09006 * 109.47215 * 300.00105 * 9 8 7 31 31 H 1.09004 * 109.47016 * 59.99716 * 9 8 7 32 32 H 0.96997 * 119.99315 * 180.02562 * 13 12 10 33 33 H 1.08008 * 120.11434 * 179.97438 * 18 7 6 34 34 H 1.08001 * 119.68829 * 180.24699 * 19 18 7 35 35 H 1.08002 * 119.72537 * 179.77887 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2842 2.1345 -1.0680 5 6 2.7125 3.3468 -0.7128 6 6 2.7283 3.3927 0.6663 7 6 3.0791 4.3850 1.6041 8 6 3.5571 5.7372 1.1410 9 6 2.3511 6.6373 0.8648 10 6 2.8290 7.9896 0.4024 11 1 3.8871 8.1875 0.3148 12 6 1.9155 8.9743 0.0912 13 7 0.6270 8.7336 0.1984 14 14 2.5079 10.6504 -0.4827 15 1 3.9925 10.6654 -0.5176 16 1 1.9775 10.9240 -1.8425 17 1 2.0248 11.6943 0.4564 18 6 2.9811 4.1073 2.9305 19 6 2.5282 2.8411 3.3481 20 6 2.2002 1.8977 2.4448 21 7 2.2926 2.1567 1.1020 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.9943 4.1463 -1.3818 28 1 4.1771 6.1882 1.9158 29 1 4.1418 5.6229 0.2283 30 1 1.7310 6.1863 0.0900 31 1 1.7663 6.7516 1.7775 32 1 -0.0156 9.4262 -0.0209 33 1 3.2463 4.8563 3.6620 34 1 2.4469 2.6231 4.4028 35 1 1.8579 0.9302 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:46 Heat of formation + Delta-G solvation = 60.202231 kcal Electronic energy + Delta-G solvation = -16928.232192 eV Core-core repulsion = 14312.474366 eV Total energy + Delta-G solvation = -2615.757825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.50795 -37.41890 -34.89536 -33.64252 -32.60885 -31.12128 -29.26703 -27.45917 -25.31471 -23.82711 -22.88191 -21.96057 -21.11007 -19.51155 -17.10357 -16.56914 -16.26714 -15.66722 -15.29152 -14.52421 -14.41603 -14.21290 -13.54715 -13.30867 -12.86150 -12.68175 -12.34267 -11.91801 -11.71127 -11.58984 -11.42101 -11.20221 -11.13829 -10.94508 -10.57249 -10.16825 -9.99310 -9.85110 -9.42527 -9.11946 -8.80755 -8.36542 -7.02325 -6.00826 -4.04326 1.15285 1.57085 2.87372 3.31352 3.32022 3.38981 3.42700 3.78763 4.45295 4.46467 4.65041 4.82188 5.05851 5.15184 5.20537 5.30561 5.35176 5.37706 5.43351 5.68704 5.83618 5.85892 5.94873 6.11006 6.18743 6.23640 6.38789 6.55543 6.75760 6.84118 6.96631 7.07221 7.49696 7.65402 7.76707 7.98014 8.21775 8.37324 9.02626 9.60106 11.10228 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.005373 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.220974 B = 5209.911501 C = 5614.851835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C 0.148 3.852 4 N -0.454 5.454 5 C -0.006 4.006 6 C 0.007 3.993 7 C 0.002 3.998 8 C -0.075 4.075 9 C 0.031 3.969 10 C -0.522 4.522 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.159 4.159 19 C -0.112 4.112 20 C 0.012 3.988 21 N -0.358 5.358 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.183 0.817 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -16.104 5.004 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 C -0.106 4.106 4 N -0.169 5.169 5 C -0.161 4.161 6 C -0.101 4.101 7 C 0.000 4.000 8 C -0.113 4.113 9 C -0.006 4.006 10 C -0.560 4.560 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.179 4.179 19 C -0.133 4.133 20 C -0.107 4.107 21 N -0.029 5.029 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.200 0.800 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.149 -16.472 4.173 17.128 hybrid contribution 0.191 1.334 0.649 1.496 sum 2.340 -15.139 4.822 16.060 Atomic orbital electron populations 1.21767 0.94249 1.01827 1.02774 1.19828 0.96153 0.87231 1.03492 1.22997 1.10524 0.97205 0.79870 1.69909 1.15106 1.04305 1.27570 1.22617 1.06900 0.95658 0.90922 1.19606 1.08550 0.86451 0.95505 1.19817 0.93810 0.94863 0.91557 1.20839 1.00783 0.88973 1.00735 1.19073 0.91387 0.92866 0.97267 1.21248 0.92994 0.96907 1.44869 0.92407 1.25019 0.94854 0.98847 0.95610 1.69985 1.00647 1.33779 1.48837 0.86534 0.78959 0.84116 0.78395 1.19656 1.20966 1.21048 1.20891 1.04473 0.96924 0.95614 1.20766 0.99836 0.93343 0.99333 1.21332 1.07247 1.01484 0.80643 1.42633 1.42058 1.12290 1.05906 0.91877 0.92893 0.91741 0.88907 0.90933 0.80021 0.91403 0.91480 0.96136 0.96468 0.93006 0.84840 0.84087 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 37.16 0.37 -1.15 16 2 C -0.03 -0.31 6.38 -27.88 -0.18 -0.49 16 3 C 0.15 2.38 7.21 -155.09 -1.12 1.26 16 4 N -0.45 -8.46 11.19 -10.12 -0.11 -8.58 16 5 C -0.01 -0.11 11.74 -16.96 -0.20 -0.31 16 6 C 0.01 0.14 6.64 -84.09 -0.56 -0.42 16 7 C 0.00 0.03 5.15 -104.43 -0.54 -0.51 16 8 C -0.08 -1.54 5.20 -27.88 -0.14 -1.68 16 9 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.16 -2.51 9.70 -39.46 -0.38 -2.89 16 19 C -0.11 -1.44 9.97 -39.87 -0.40 -1.84 16 20 C 0.01 0.16 10.80 -16.48 -0.18 -0.02 16 21 N -0.36 -5.89 2.94 -58.16 -0.17 -6.06 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 27 H 0.18 3.36 8.06 -52.49 -0.42 2.94 16 28 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 29 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.15 1.42 7.98 -52.49 -0.42 1.00 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -32.57 301.68 -8.92 -41.49 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.02 Total: -0.99 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -3.88 Total: -20.70 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.45 Total: -40.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.57 -8.92 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.689 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds