Wall clock time and date at job start Mon Mar 30 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47265 * 2 1 4 4 N 1.30897 * 125.31942 * 270.02549 * 3 2 1 5 5 C 1.33398 * 109.87385 * 179.97438 * 4 3 2 6 6 C 1.37994 * 107.45983 * 359.97438 * 5 4 3 7 7 C 1.40969 * 133.71310 * 179.97438 * 6 5 4 8 8 C 1.50707 * 120.40845 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47334 * 84.99842 * 8 7 6 10 10 C 1.50697 * 109.47332 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99794 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99966 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00077 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99936 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46835 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47010 * 119.99782 * 14 12 10 17 17 H 1.48492 * 109.46983 * 240.00147 * 14 12 10 18 18 C 1.35871 * 119.17887 * 180.02562 * 7 6 5 19 19 C 1.40816 * 119.77225 * 359.76439 * 18 7 6 20 20 C 1.34663 * 120.61876 * 0.49661 * 19 18 7 21 21 N 1.35038 * 125.30921 * 90.00035 * 3 2 1 22 22 H 1.08999 * 109.47518 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47402 * 299.99826 * 1 2 3 24 24 H 1.09006 * 109.46720 * 59.99509 * 1 2 3 25 25 H 1.09001 * 109.46741 * 240.00447 * 2 1 3 26 26 H 1.08993 * 109.47069 * 120.00563 * 2 1 3 27 27 H 1.07993 * 126.27219 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.46629 * 204.99540 * 8 7 6 29 29 H 1.09001 * 109.46807 * 324.99724 * 8 7 6 30 30 H 1.09006 * 109.47215 * 300.00105 * 9 8 7 31 31 H 1.09004 * 109.47016 * 59.99716 * 9 8 7 32 32 H 0.96997 * 119.99315 * 180.02562 * 13 12 10 33 33 H 1.08008 * 120.11434 * 179.97438 * 18 7 6 34 34 H 1.08001 * 119.68829 * 180.24699 * 19 18 7 35 35 H 1.08002 * 119.72537 * 179.77887 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2842 2.1345 -1.0680 5 6 2.7125 3.3468 -0.7128 6 6 2.7283 3.3927 0.6663 7 6 3.0791 4.3850 1.6041 8 6 3.5571 5.7372 1.1410 9 6 2.3511 6.6373 0.8648 10 6 2.8290 7.9896 0.4024 11 1 3.8871 8.1875 0.3148 12 6 1.9155 8.9743 0.0912 13 7 0.6270 8.7336 0.1984 14 14 2.5079 10.6504 -0.4827 15 1 3.9925 10.6654 -0.5176 16 1 1.9775 10.9240 -1.8425 17 1 2.0248 11.6943 0.4564 18 6 2.9811 4.1073 2.9305 19 6 2.5282 2.8411 3.3481 20 6 2.2002 1.8977 2.4448 21 7 2.2926 2.1567 1.1020 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.9943 4.1463 -1.3818 28 1 4.1771 6.1882 1.9158 29 1 4.1418 5.6229 0.2283 30 1 1.7310 6.1863 0.0900 31 1 1.7663 6.7516 1.7775 32 1 -0.0156 9.4262 -0.0209 33 1 3.2463 4.8563 3.6620 34 1 2.4469 2.6231 4.4028 35 1 1.8579 0.9302 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:45 Heat of formation + Delta-G solvation = 42.269071 kcal Electronic energy + Delta-G solvation = -16929.009832 eV Core-core repulsion = 14312.474366 eV Total energy + Delta-G solvation = -2616.535466 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.76861 -38.68494 -36.43522 -35.00389 -34.17884 -32.54850 -30.86479 -28.71585 -27.10987 -24.85503 -24.36149 -23.32391 -22.70976 -20.82385 -18.57114 -18.28148 -17.69525 -16.92964 -16.50684 -16.43946 -15.57800 -15.26156 -14.87182 -14.62100 -14.50923 -14.31070 -13.63436 -13.39860 -13.10113 -12.89479 -12.82999 -12.61778 -12.50668 -12.23415 -12.04320 -11.88623 -11.76735 -11.29790 -11.24270 -11.00655 -10.57965 -10.12017 -8.31333 -8.18996 -6.32813 -0.06779 0.34026 1.40099 1.40988 1.54307 1.69619 2.03917 2.39930 2.51637 3.12843 3.39951 3.57233 3.74764 3.97160 4.05669 4.12786 4.25417 4.35579 4.38116 4.59310 4.73338 4.78463 4.83967 4.91503 4.96273 5.07987 5.09943 5.20749 5.31167 5.40817 5.48156 5.55107 5.69482 5.77333 5.82278 6.20495 6.35299 6.84191 6.90812 7.37030 8.91381 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.005373 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.220974 B = 5209.911501 C = 5614.851835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C 0.154 3.846 4 N -0.484 5.484 5 C -0.050 4.050 6 C -0.004 4.004 7 C -0.049 4.049 8 C -0.058 4.058 9 C 0.042 3.958 10 C -0.541 4.541 11 H 0.066 0.934 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.281 1.281 17 H -0.277 1.277 18 C -0.137 4.137 19 C -0.119 4.119 20 C 0.023 3.977 21 N -0.366 5.366 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.167 0.833 28 H 0.079 0.921 29 H 0.061 0.939 30 H -0.017 1.017 31 H -0.009 1.009 32 H 0.263 0.737 33 H 0.148 0.852 34 H 0.191 0.809 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -17.895 7.137 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.102 4.102 4 N -0.199 5.199 5 C -0.203 4.203 6 C -0.113 4.113 7 C -0.051 4.051 8 C -0.096 4.096 9 C 0.005 3.995 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.791 3.209 15 H -0.182 1.182 16 H -0.207 1.207 17 H -0.202 1.202 18 C -0.157 4.157 19 C -0.139 4.139 20 C -0.095 4.095 21 N -0.036 5.036 22 H 0.114 0.886 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.185 0.815 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.001 0.999 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.208 0.792 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.585 -18.260 6.303 19.490 hybrid contribution 0.012 1.761 0.084 1.764 sum 2.598 -16.499 6.387 17.882 Atomic orbital electron populations 1.21744 0.93505 1.03532 1.01389 1.20119 0.96577 0.84223 1.05636 1.23982 1.08538 0.98551 0.79129 1.69836 1.16240 1.04383 1.29453 1.22518 1.09744 0.96333 0.91731 1.19609 1.08639 0.87821 0.95278 1.19606 0.98302 0.94252 0.92980 1.20475 0.98385 0.89734 1.00990 1.18852 0.92788 0.93334 0.94574 1.21712 0.93504 0.97988 1.44649 0.91626 1.26002 0.94873 1.03323 0.95595 1.70130 1.02092 1.35313 1.50041 0.85373 0.79059 0.78677 0.77794 1.18227 1.20663 1.20224 1.21324 1.01268 0.98607 0.94526 1.21285 0.99183 0.91665 1.01812 1.22327 1.04654 1.03539 0.78968 1.42900 1.42027 1.11296 1.07426 0.88570 0.93243 0.94203 0.88142 0.87370 0.81550 0.90213 0.92076 0.99877 0.99030 0.92827 0.83460 0.79231 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.03 -0.52 6.38 29.85 0.19 -0.33 16 3 C 0.15 4.78 7.21 138.01 1.00 5.78 16 4 N -0.48 -18.79 11.19 -185.92 -2.08 -20.87 16 5 C -0.05 -2.08 11.74 84.40 0.99 -1.09 16 6 C 0.00 -0.16 6.64 38.77 0.26 0.10 16 7 C -0.05 -1.88 5.15 -19.74 -0.10 -1.98 16 8 C -0.06 -2.48 5.20 29.85 0.16 -2.32 16 9 C 0.04 2.27 4.95 29.85 0.15 2.41 16 10 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 11 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 13 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 14 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C -0.14 -4.09 9.70 22.35 0.22 -3.87 16 19 C -0.12 -2.59 9.97 22.08 0.22 -2.37 16 20 C 0.02 0.52 10.80 83.05 0.90 1.42 16 21 N -0.37 -11.52 2.94 -337.91 -1.00 -12.52 16 22 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.11 1.35 8.04 -2.39 -0.02 1.33 16 27 H 0.17 7.03 8.06 -2.91 -0.02 7.01 16 28 H 0.08 3.12 8.05 -2.39 -0.02 3.10 16 29 H 0.06 2.60 8.02 -2.39 -0.02 2.58 16 30 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 31 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 34 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.21 2.41 7.98 -2.91 -0.02 2.38 16 Total: -1.00 -75.57 301.68 5.67 -69.90 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.06 Total: 9.32 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 5.38 Total: -34.58 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.79 Total: -91.50 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.57 5.67 -69.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.164 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds