Wall clock time and date at job start Mon Mar 30 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50708 * 109.46706 * 2 1 4 4 N 1.30900 * 125.31411 * 270.33418 * 3 2 1 5 5 C 1.33403 * 109.87027 * 180.15824 * 4 3 2 6 6 C 1.50702 * 126.26633 * 179.81809 * 5 4 3 7 7 H 1.08998 * 109.46654 * 179.69057 * 6 5 4 8 8 C 1.53007 * 109.46801 * 59.69639 * 6 5 4 9 9 C 1.50695 * 109.47380 * 299.69448 * 6 5 4 10 10 H 1.07997 * 120.00269 * 29.10087 * 9 6 5 11 11 C 1.37879 * 119.99697 * 209.09789 * 9 6 5 12 12 N 1.31517 * 120.00016 * 352.54228 * 11 9 6 13 13 Si 1.86800 * 119.99938 * 172.54222 * 11 9 6 14 14 H 1.48505 * 109.47141 * 179.97438 * 13 11 9 15 15 H 1.48491 * 109.47312 * 300.00061 * 13 11 9 16 16 H 1.48503 * 109.47049 * 60.00409 * 13 11 9 17 17 C 1.37988 * 107.45991 * 359.56168 * 5 4 3 18 18 C 1.40968 * 133.71176 * 180.28617 * 17 5 4 19 19 C 1.35874 * 119.17975 * 179.97438 * 18 17 5 20 20 C 1.40819 * 119.77327 * 359.97438 * 19 18 17 21 21 C 1.34672 * 120.61618 * 0.02562 * 20 19 18 22 22 N 1.35030 * 125.31733 * 90.00114 * 3 2 1 23 23 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47218 * 299.99996 * 1 2 3 25 25 H 1.09001 * 109.47451 * 60.00086 * 1 2 3 26 26 H 1.08997 * 109.47667 * 239.99885 * 2 1 3 27 27 H 1.08995 * 109.47412 * 119.99451 * 2 1 3 28 28 H 1.09000 * 109.46949 * 177.46175 * 8 6 5 29 29 H 1.09001 * 109.46791 * 297.45881 * 8 6 5 30 30 H 1.08999 * 109.47483 * 57.46132 * 8 6 5 31 31 H 0.96996 * 120.00413 * 354.50174 * 12 11 9 32 32 H 1.08002 * 120.40807 * 359.94860 * 18 17 5 33 33 H 1.07992 * 120.11851 * 179.97438 * 19 18 17 34 34 H 1.07992 * 119.69330 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.72613 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2785 2.1364 -1.0681 5 6 2.7123 3.3469 -0.7129 6 6 3.1061 4.4623 -1.6467 7 1 3.4132 5.3315 -1.0652 8 6 1.9124 4.8344 -2.5286 9 6 4.2508 4.0093 -2.5158 10 1 4.3582 2.9642 -2.7659 11 6 5.1610 4.9291 -2.9917 12 7 4.9515 6.2150 -2.8120 13 14 6.6916 4.3489 -3.8916 14 1 7.5019 5.5249 -4.2992 15 1 7.4949 3.4811 -2.9935 16 1 6.2947 3.5798 -5.0983 17 6 2.7287 3.3926 0.6661 18 6 3.0790 4.3853 1.6038 19 6 2.9809 4.1077 2.9302 20 6 2.5327 2.8398 3.3480 21 6 2.2003 1.8979 2.4447 22 7 2.2924 2.1569 1.1018 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.1833 5.6711 -3.1726 29 1 1.6337 3.9783 -3.1430 30 1 1.0698 5.1191 -1.8984 31 1 4.1202 6.5204 -2.4164 32 1 3.4216 5.3542 1.2719 33 1 3.2457 4.8567 3.6617 34 1 2.4556 2.6204 4.4026 35 1 1.8578 0.9305 2.7811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:34 Heat of formation + Delta-G solvation = 64.229941 kcal Electronic energy + Delta-G solvation = -17410.005327 eV Core-core repulsion = 14794.422157 eV Total energy + Delta-G solvation = -2615.583171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25206 -37.09428 -35.03318 -33.33498 -32.32647 -30.28344 -30.14981 -26.83151 -24.69275 -23.89362 -23.21329 -22.21823 -20.50171 -19.58348 -17.12377 -16.37863 -16.05499 -15.47221 -15.29437 -14.50792 -14.20778 -13.81447 -13.65977 -13.26651 -12.66774 -12.47856 -11.99727 -11.75663 -11.63683 -11.18906 -11.11149 -11.10026 -10.97716 -10.69358 -10.61396 -10.08404 -10.00681 -9.68424 -9.43300 -8.73917 -8.46184 -8.26912 -6.72890 -6.25974 -3.95724 1.21436 1.71462 3.07723 3.50381 3.51887 3.62092 3.70940 3.97618 4.61690 4.65262 4.71008 4.98535 5.14107 5.21646 5.33556 5.40041 5.45631 5.51912 5.55716 5.79878 5.99089 6.03476 6.12440 6.20321 6.27523 6.39918 6.61712 6.66838 6.79014 6.99270 7.01946 7.28826 7.42183 7.58507 7.81296 8.28027 8.58476 8.71324 8.96410 9.72182 11.10474 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.007583 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.222739 B = 3691.769018 C = 4236.989703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 C 0.154 3.846 4 N -0.443 5.443 5 C 0.097 3.903 6 C 0.100 3.900 7 H 0.043 0.957 8 C -0.127 4.127 9 C -0.574 4.574 10 H 0.054 0.946 11 C 0.019 3.981 12 N -0.915 5.915 13 Si 1.065 2.935 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.288 1.288 17 C -0.041 4.041 18 C -0.035 4.035 19 C -0.167 4.167 20 C -0.132 4.132 21 C 0.033 3.967 22 N -0.369 5.369 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.014 0.986 31 H 0.269 0.731 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 -8.590 11.640 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.100 4.100 4 N -0.157 5.157 5 C -0.041 4.041 6 C 0.080 3.920 7 H 0.061 0.939 8 C -0.185 4.185 9 C -0.612 4.612 10 H 0.072 0.928 11 C -0.184 4.184 12 N -0.551 5.551 13 Si 0.893 3.107 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.214 1.214 17 C -0.146 4.146 18 C -0.055 4.055 19 C -0.187 4.187 20 C -0.154 4.154 21 C -0.086 4.086 22 N -0.042 5.042 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.592 -8.488 10.142 14.359 hybrid contribution -1.270 -0.358 1.710 2.160 sum -6.862 -8.846 11.853 16.304 Atomic orbital electron populations 1.21746 0.94460 1.01646 1.02489 1.19818 0.95925 0.87540 1.03474 1.23164 1.09758 0.97100 0.80002 1.69929 1.15128 1.04099 1.26574 1.21941 0.98584 0.94335 0.89213 1.17460 0.93966 0.89157 0.91410 0.93901 1.21848 0.96826 1.00445 0.99370 1.21858 1.10925 0.96169 1.32274 0.92787 1.25786 1.01991 0.94002 0.96628 1.70795 1.27793 1.14479 1.42052 0.83610 0.75631 0.75268 0.76153 1.20851 1.21642 1.21424 1.19498 1.12394 0.87242 0.95430 1.20585 0.95402 0.97923 0.91566 1.20796 1.05086 0.97238 0.95603 1.20632 1.01964 0.93726 0.99053 1.21365 1.05135 1.00952 0.81177 1.42614 1.43534 1.12589 1.05450 0.92007 0.93191 0.91752 0.88812 0.91143 0.93365 0.93544 0.96693 0.91985 0.84111 0.85446 0.84508 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 37.16 0.37 -1.33 16 2 C -0.03 -0.39 6.38 -27.88 -0.18 -0.56 16 3 C 0.15 2.93 7.21 -155.09 -1.12 1.81 16 4 N -0.44 -10.30 11.19 -6.40 -0.07 -10.37 16 5 C 0.10 2.35 5.70 -82.00 -0.47 1.88 16 6 C 0.10 2.62 2.36 -92.92 -0.22 2.41 16 7 H 0.04 1.16 6.60 -51.93 -0.34 0.82 16 8 C -0.13 -3.10 9.08 37.16 0.34 -2.77 16 9 C -0.57 -16.70 8.29 -34.44 -0.29 -16.99 16 10 H 0.05 1.64 7.82 -52.49 -0.41 1.23 16 11 C 0.02 0.56 5.44 -17.82 -0.10 0.46 16 12 N -0.91 -27.51 13.55 55.43 0.75 -26.76 16 13 Si 1.06 25.96 29.91 -169.99 -5.08 20.88 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.04 -0.87 6.74 -84.10 -0.57 -1.44 16 18 C -0.03 -0.63 9.96 -39.40 -0.39 -1.02 16 19 C -0.17 -2.42 10.07 -39.45 -0.40 -2.82 16 20 C -0.13 -1.69 9.97 -39.87 -0.40 -2.08 16 21 C 0.03 0.47 10.80 -16.47 -0.18 0.29 16 22 N -0.37 -6.78 2.94 -58.16 -0.17 -6.95 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 28 H 0.05 1.20 7.65 -51.93 -0.40 0.80 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.27 7.97 6.37 -40.82 -0.26 7.71 16 32 H 0.14 2.48 7.83 -52.49 -0.41 2.07 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.15 1.54 7.98 -52.49 -0.42 1.12 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -33.47 298.08 -8.51 -41.98 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.84 Total: -1.12 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.59 Total: -22.16 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.51 Total: -44.08 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.47 -8.51 -41.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.215 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds