Wall clock time and date at job start Mon Mar 30 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50708 * 109.46706 * 2 1 4 4 N 1.30900 * 125.31411 * 270.33418 * 3 2 1 5 5 C 1.33403 * 109.87027 * 180.15824 * 4 3 2 6 6 C 1.50702 * 126.26633 * 179.81809 * 5 4 3 7 7 H 1.08998 * 109.46654 * 179.69057 * 6 5 4 8 8 C 1.53007 * 109.46801 * 59.69639 * 6 5 4 9 9 C 1.50695 * 109.47380 * 299.69448 * 6 5 4 10 10 H 1.07997 * 120.00269 * 29.10087 * 9 6 5 11 11 C 1.37879 * 119.99697 * 209.09789 * 9 6 5 12 12 N 1.31517 * 120.00016 * 352.54228 * 11 9 6 13 13 Si 1.86800 * 119.99938 * 172.54222 * 11 9 6 14 14 H 1.48505 * 109.47141 * 179.97438 * 13 11 9 15 15 H 1.48491 * 109.47312 * 300.00061 * 13 11 9 16 16 H 1.48503 * 109.47049 * 60.00409 * 13 11 9 17 17 C 1.37988 * 107.45991 * 359.56168 * 5 4 3 18 18 C 1.40968 * 133.71176 * 180.28617 * 17 5 4 19 19 C 1.35874 * 119.17975 * 179.97438 * 18 17 5 20 20 C 1.40819 * 119.77327 * 359.97438 * 19 18 17 21 21 C 1.34672 * 120.61618 * 0.02562 * 20 19 18 22 22 N 1.35030 * 125.31733 * 90.00114 * 3 2 1 23 23 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47218 * 299.99996 * 1 2 3 25 25 H 1.09001 * 109.47451 * 60.00086 * 1 2 3 26 26 H 1.08997 * 109.47667 * 239.99885 * 2 1 3 27 27 H 1.08995 * 109.47412 * 119.99451 * 2 1 3 28 28 H 1.09000 * 109.46949 * 177.46175 * 8 6 5 29 29 H 1.09001 * 109.46791 * 297.45881 * 8 6 5 30 30 H 1.08999 * 109.47483 * 57.46132 * 8 6 5 31 31 H 0.96996 * 120.00413 * 354.50174 * 12 11 9 32 32 H 1.08002 * 120.40807 * 359.94860 * 18 17 5 33 33 H 1.07992 * 120.11851 * 179.97438 * 19 18 17 34 34 H 1.07992 * 119.69330 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.72613 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2785 2.1364 -1.0681 5 6 2.7123 3.3469 -0.7129 6 6 3.1061 4.4623 -1.6467 7 1 3.4132 5.3315 -1.0652 8 6 1.9124 4.8344 -2.5286 9 6 4.2508 4.0093 -2.5158 10 1 4.3582 2.9642 -2.7659 11 6 5.1610 4.9291 -2.9917 12 7 4.9515 6.2150 -2.8120 13 14 6.6916 4.3489 -3.8916 14 1 7.5019 5.5249 -4.2992 15 1 7.4949 3.4811 -2.9935 16 1 6.2947 3.5798 -5.0983 17 6 2.7287 3.3926 0.6661 18 6 3.0790 4.3853 1.6038 19 6 2.9809 4.1077 2.9302 20 6 2.5327 2.8398 3.3480 21 6 2.2003 1.8979 2.4447 22 7 2.2924 2.1569 1.1018 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.1833 5.6711 -3.1726 29 1 1.6337 3.9783 -3.1430 30 1 1.0698 5.1191 -1.8984 31 1 4.1202 6.5204 -2.4164 32 1 3.4216 5.3542 1.2719 33 1 3.2457 4.8567 3.6617 34 1 2.4556 2.6204 4.4026 35 1 1.8578 0.9305 2.7811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:34 Heat of formation + Delta-G solvation = 44.734626 kcal Electronic energy + Delta-G solvation = -17410.850708 eV Core-core repulsion = 14794.422157 eV Total energy + Delta-G solvation = -2616.428551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.67227 -38.42453 -36.83787 -34.83245 -33.63289 -32.20447 -31.48994 -28.24551 -26.86304 -25.06735 -24.54970 -23.91705 -21.82943 -21.27604 -18.97546 -17.74786 -17.59176 -16.83980 -16.56352 -15.86627 -15.67091 -15.58696 -15.01381 -14.65947 -14.57643 -13.59119 -13.56558 -13.28596 -13.11599 -12.83985 -12.67164 -12.57863 -12.33926 -12.29023 -12.07595 -11.96236 -11.71620 -11.49214 -11.07462 -10.57227 -10.45545 -10.11206 -8.62774 -8.11027 -6.27602 -0.02361 0.39446 1.49788 1.57731 1.77447 1.78683 2.19114 2.53336 2.60171 3.19724 3.44710 3.61907 3.86470 4.01534 4.04313 4.23317 4.26612 4.34743 4.39965 4.54345 4.64070 4.82139 4.85988 4.93805 4.95573 4.97699 5.07995 5.21339 5.25368 5.29284 5.38763 5.53132 5.72662 5.83391 6.11089 6.24547 6.46564 6.66873 7.17664 7.47050 8.78867 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.007583 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.222739 B = 3691.769018 C = 4236.989703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 C 0.149 3.851 4 N -0.486 5.486 5 C 0.027 3.973 6 C 0.102 3.898 7 H 0.021 0.979 8 C -0.111 4.111 9 C -0.585 4.585 10 H 0.032 0.968 11 C -0.028 4.028 12 N -0.934 5.934 13 Si 1.110 2.890 14 H -0.276 1.276 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.040 4.040 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.131 4.131 21 C 0.031 3.969 22 N -0.369 5.369 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.259 0.741 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.192 0.808 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -10.824 15.061 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.107 4.107 4 N -0.201 5.201 5 C -0.108 4.108 6 C 0.082 3.918 7 H 0.039 0.961 8 C -0.169 4.169 9 C -0.624 4.624 10 H 0.050 0.950 11 C -0.225 4.225 12 N -0.571 5.571 13 Si 0.932 3.068 14 H -0.201 1.201 15 H -0.204 1.204 16 H -0.200 1.200 17 C -0.147 4.147 18 C -0.117 4.117 19 C -0.143 4.143 20 C -0.151 4.151 21 C -0.087 4.087 22 N -0.041 5.041 23 H 0.114 0.886 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.182 0.818 34 H 0.209 0.791 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.954 -10.723 13.567 18.289 hybrid contribution -1.247 0.279 0.925 1.578 sum -7.202 -10.444 14.492 19.260 Atomic orbital electron populations 1.21697 0.92903 1.03483 1.01451 1.20074 0.97085 0.84344 1.05002 1.24022 1.08815 0.98545 0.79304 1.69730 1.16476 1.04427 1.29448 1.21439 1.04005 0.94820 0.90545 1.17193 0.93454 0.89664 0.91454 0.96082 1.21636 0.97115 0.99183 0.98947 1.22061 1.12413 0.95007 1.32891 0.94989 1.27152 1.04788 0.93659 0.96944 1.70893 1.27631 1.15131 1.43476 0.83032 0.72631 0.75351 0.75774 1.20130 1.20419 1.19966 1.19628 1.11218 0.89031 0.94864 1.20631 1.00287 0.97611 0.93131 1.21396 0.99841 0.98699 0.94340 1.21312 1.00094 0.92143 1.01567 1.22405 1.03777 1.03458 0.79102 1.42825 1.42842 1.11269 1.07181 0.88635 0.92619 0.94418 0.89304 0.87494 0.94801 0.94621 0.95001 0.93046 0.85582 0.81843 0.79052 0.78255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.89 71.98 0.71 -2.13 16 2 C -0.03 -0.65 6.38 29.85 0.19 -0.46 16 3 C 0.15 5.57 7.21 138.02 1.00 6.57 16 4 N -0.49 -23.62 11.19 -174.15 -1.95 -25.57 16 5 C 0.03 1.40 5.70 42.26 0.24 1.64 16 6 C 0.10 5.77 2.36 -12.28 -0.03 5.74 16 7 H 0.02 1.24 6.60 -2.39 -0.02 1.23 16 8 C -0.11 -5.82 9.08 71.98 0.65 -5.17 16 9 C -0.59 -36.13 8.29 25.60 0.21 -35.92 16 10 H 0.03 2.06 7.82 -2.91 -0.02 2.03 16 11 C -0.03 -1.67 5.44 84.65 0.46 -1.21 16 12 N -0.93 -58.66 13.55 21.45 0.29 -58.37 16 13 Si 1.11 53.67 29.91 68.60 2.05 55.72 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 17 C -0.04 -1.75 6.74 38.76 0.26 -1.48 16 18 C -0.10 -3.53 9.96 22.39 0.22 -3.31 16 19 C -0.12 -3.10 10.07 22.35 0.23 -2.88 16 20 C -0.13 -2.58 9.97 22.08 0.22 -2.36 16 21 C 0.03 0.72 10.80 83.06 0.90 1.61 16 22 N -0.37 -12.97 2.94 -337.91 -0.99 -13.96 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 28 H 0.03 1.80 7.65 -2.39 -0.02 1.78 16 29 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.26 16.34 6.37 -92.71 -0.59 15.75 16 32 H 0.13 4.79 7.83 -2.91 -0.02 4.77 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.20 2.64 7.98 -2.91 -0.02 2.61 16 Total: -1.00 -79.99 298.08 5.91 -74.09 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.24 Total: 7.45 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 5.26 Total: -39.35 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -2.65 Total: -97.90 kcal Atomic # 14 Polarization: 53.67 SS G_CDS: 2.05 Total: 55.72 kcal Total: -79.99 5.91 -74.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.823 kcal (2) G-P(sol) polarization free energy of solvation -79.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds